• KSCE Journal of Civil and Environmental Engineering Research
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• v.31 no.4B
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• pp.383-391
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• 2011

In this study, an evaluation method was proposed to determine the restoration section in the riverine ecobelt project. The target river for this study is the Hongcheon river in Kangwon-do. The Hongcheon river of 96 km was divided longitudinally into subsections of 2 km. The analysis through map and aerial photograph as well as field surveys were performed in 48-sub-sections. The fragmentation items were classified into connectivity and ecological functionality. The connectivity fragmentation was also divided into two items: the area discontinuity of the land use and the line discontinuity of river bank and road. Also, the ecological functional fragmentation was evaluated by using the items of river channel, river bed, vegetation, and the obstruction of river flow. These items was modified from those in the previous literature. From map analyses and field surveys, the fragmentation score was kept with each items in 48 sub-sections of Hongcheon river. The fragmentation rate was made from the total score in each section. The results showed that sections from F1 to G2 was evaluated to have high rates of all connectivity and functionality fragmentation of 1st or 2nd rate. Other sections have high connectivity fragmentation of 2nd rate, but low functional fragmentation. Thus, these sections are evaluated to be excludible in restoration site. This study seems to make a contribution to evaluate the fragmented sections for the riverine ecobelt project.

• Korean Journal of Microbiology
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• v.35 no.1
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• pp.28-34
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• 1999

Fragmentation vectors are used to analyze function and genomic structure of a gene of interest by creating deletion derivatives of large fragments of genomic DNA cloned as yeast artificial chromosomes (YACs). Herein, we developed a new hicistronic fragmentation vector that contains internal ribosomal entry sile (IRES) of encephalomyocarditis vin~s (EMCV) and $\beta$-galactosidase as a reporter gene. This vector system provides a novcl loo1 to analyze expression patterns of a gene of interest due to simultaneous expression of a target gene as well as $\beta$-galactosidase driven from a single message. In addition, the bicistronic fragmentation vector contains four rare-cutting restriction enzyme sites in the polycloning sites which can be used to conveniently insert any kinds of genes and therefore facilitates targeting DNA scgments into YAC by means of homologous recombination. This approach establishes a paradigm for manipulation of mammalian DNA segments and characterization of expression and regulatory regions of mammalian gene cloned as YAC.

• Bulletin of the Korean Chemical Society
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• v.27 no.12
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• pp.2084-2086
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• 2006

• KSCE Journal of Civil and Environmental Engineering Research
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• v.32 no.6B
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• pp.387-397
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• 2012

In this study, an ecological fragmentation improvement effect from different riverine ecobelt width was analyzed. The target river for this study is the Hongcheon river in Kangwondo. This section of 11 km among the Hongchenon river was reported to be seriously fragmented in the previous literatures. The Hongcheon river of 11 km was divided longitudinally into subsections of 1 km. The analysis through map and aerial photograph as well as field surveys were performed in 11 subsections(A-K). Using the fragmentation index, the connectivity fragmentation such as river bank, road, and land use and the ecological functional fragmentation were evaluated. The results showed that I-section has the highest fragmentation rate. The Hongcheon river in the present status without ecobelt was analyzed to has the fragmentation of 2nd rate from the mean fragmentation value of 11-subsections. Also, when the riverine ecobelt of 10 m-50 m was restored, the improvement effect of connectivity fragmentation was relatively small, while for the ecological fragmentation, the improvement effect of 12.4-25.1% was predicted. Also, the ecobelts of 10 m and 30 m were evaluated to have a relatively great improvement effect. Especially, for the ecobelt of 30m width, the fragmentation rate was mitigated form 2nd rate to 3rd rate.

• Journal of Microbiology and Biotechnology
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• v.19 no.1
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• pp.51-54
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• 2009

Myxobacteria, Gram-negative soil bacteria, are a well-known producer of bioactive secondary metabolites. Therefore, this study presents a methodological approach for the high-throughput screening of secondary metabolites from 4 wild-type Myxococcus xanthus strains. First, electrospray ionization mass spectrometry (ESI-MS) was performed using extracellular crude extracts. As a result, 22 metabolite peaks were detected, and the metabolite profiling was then conducted using the m/z value, retention time, and MS/MS fragmentation pattern analyses. Among the peaks, one unknown compound peak was identified as analogous to the myxalamid A, B, and C series. An analysis of the tandem mass spectrometric fragmentation patterns and HR-MS identified myxalamid K as a new compound derived from M. xanthus. In conclusion, LC-MS/MS-based chemical screening of diverse secondary metabolites would appear to be an effective approach for discovering unknown microbial secondary metabolites.

• Bulletin of the Korean Chemical Society
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• v.30 no.2
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• pp.459-463
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• 2009

Furoxanaldehydes possessing phenyl or alkenyl groups at the 3- or 4-position of the furoxan ring were designed for alkyne formation on a solid surface. Furoxans 2 and 3 were prepared from the corresponding alkenes 2a and 3a by the reaction with NaN$O_2$ in acetic acid. Furoxan 4, in which the furoxan ring is conjugated with a double bond, was prepared from bis(bromomethyl)benzene 4a in 5 steps using the Wittig reaction of aldehyde 1 as the key step. The electron beam-mediated fragmentation of furoxanaldehydes 1-4 in a mass spectrometer was exploited by focusing on alkyne formation on the solid surface. The fragmentation of furoxan 3 possessing diaryl groups afforded diarylacetylene at high efficiency, suggesting that the aryl group conjugated with the furoxan ring could facilitate alkyne formation with the evolution of NO.

• Rapid Communication in Photoscience
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• v.4 no.3
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• pp.54-58
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• 2015

Under the condition of femtosecond impulsive nonlinear optical irradiation, the bright and narrowed blue emission of silicon nanocrystal was observed. This synthetic method produced very small (~ 4 nm) oxide-capped silicon nanocrystal having probably ultra small emitting core (~ 1 nm) inferred from luminescence. By controlling the stirring condition, very high efficiencies of luminescence ( 4 fold higher) were obtained compared with the other conventional femtosecond laser fragmentation methods, which was attributed to the differences in hydration shell structure during the femtosecond laser induced irreversible phase transition reaction. When we properly adjusted the irradiation times of the white light continuum and stirring condition, very homogeneous luminescent silicon nanocrystal bands having relatively sharp lineshape were obtained, which can be attributable to the luminescent core site isolated and free from the surface defects.

• Genomics & Informatics
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• v.4 no.2
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• pp.77-79
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• 2006

In order to identify novel proapoptotic genes, we screened approximately 1,000 hypothetical genes whose functions are completely unknown. After these genes were transiently expressed in HeLa cells, their nuclei images were captured using automated high-speed fluorescence microscope, through which the ratio of apoptotic nuclei was estimated. We selected genes that induce greater than 3-fold increase in apoptotic nuclei compared to that of the vector control. The candidate proapoptotic genes were sequenced and their effects on cell death were further confirmed by the additional assay, DNA fragmentation ELISA. Finally, we were able to identify 4 full-length hypo-thetical genes with proapoptotic activity.

• Molecules and Cells
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• v.23 no.2
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• pp.170-174
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• 2007

High-throughput subcellular imaging is a powerful tool for investigating the function of genes. In order to identify novel regulators of apoptosis we transiently transfected HeLa cells with 938 hypothetical genes of unknown function, and captured their nuclear images with an automated fluorescence microscope. We selected genes that induced greater than 3-fold increase in the percentage of apoptotic nuclei compared with vector-transfected cells. The full-length genes C10orf61, MGC 26717, and FLJ13855 were identified as candidate proapoptotic genes, and their apoptotic effects were confirmed by DNA fragmentation ELISAs and Western blotting for caspase-7 and PARP. We conclude that a subcellular image-based apoptotic screen is useful for identifying genes with proapoptotic activity.

• Asian-Australasian Journal of Animal Sciences
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• v.15 no.7
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• pp.1045-1050
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• 2002

The aims of this study were to detect spontaneously occurring apoptosis in cultured porcine ovarian cells, to examine the role of growth hormone (GH), tyrosine kinase (TK), protein kinase G (PKG) and cyclin-dependent kinase (CDK) in the control of this process, and to determine whether the effect of GH on apoptosis is mediated by TK-, PKG- and cdc2-dependent intracellular mechanisms. We studied the action of pGH (10 ng/ml), blockers of TK (genistein, lavendustin, both 100 ng/ml), PKG (Rp-Br-PET-cGMPS, 50 nM; KT5823, 100 ng/ml) and CDK (olomoucine, $1{\mu}g/ml$), as well as combinations of GH with these blockers, on the onset of apoptosis in cultured granulosa cells isolated from antral (3-6 mm) porcine follicles. The functional characteristics of an early apoptotic event, DNA fragmentation, were determined using terminal deoxynucleotidyltransferase (TdT)-mediated dUTP nick end labelling (TUNEL), whilst morphological signs of advanced apoptosis such as pyknosis, chromatin marginalization, shrinkage and fragmentation of nucleus, were detected using routine light microscopy. After culture, some ovarian granulosa cells exhibited DNA fragmentation, which in some cases was associated with morphological apoptosis-related changes (pyknosis, shrinkage and fragmentation of the nucleus). GH significantly reduced the proportion of TUNEL-positive cells. Neither TK nor CDK blockers when given alone, significantly affected the percentage of TUNEL-positive cells although both PKG blockers significantly increased this index. Furthermore, TK and PKG blockers given together with GH, prevented or reversed the inhibitory effect of GH on apoptosis, whilst the CDK blocker olomoucine promoted it. These observations demonstrate apoptosis in porcine ovaries and suggest the involvement of GH, TK, PKG and CDK in the control of this process. They also suggest that the effect of GH on ovarian apoptosis is mediated or regulated by multiple signalling pathways including TK-, PKG- and CDK-dependent intracellular mechanisms.