• Proceedings of the National Institute of Ecology of the Republic of Korea
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• 제3권2호
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• pp.122-128
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• 2022

To present the spatial variation of fish assemblages in the Geum River in Korea, the concept of beta diversity (β-diversity) estimates based on the variance of the community data table was applied. Fish communities and environmental variables were collected from 13 sampling sites along the in mid-low reaches of the River. We calculated the β-diversity and local contribution to beta diversity (LCBD) values at each site depending on the two types of data, 'occurrence' with Jaccard and Sørensen dissimilarity coefficients, and 'abundance' with Hellinger distance. Multivariate and correlation analyses were also performed to determine the relationships between LCBD and other variables, such as community indices and physicochemical and hydrological factors. The β-diversity values of fish communities in the River were estimated as 0.218 and 0.145 for occurrence data table with Jaccard and Sørensen respectively, and 0.268 for abundance data. Similar patterns of LCBD along the sampling sites were detected in two dissimilarity measurements of occurrence table, and LCBD values with abundance data were slightly different. The LCBD values are strongly correlated with community indices, and also suitable for indicating the uniqueness of fish assemblages. However, further research is needed to determine the LCBD value as an indicator of environmental variability.

• Fisheries and Aquatic Sciences
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• 제25권11호
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• pp.549-558
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• 2022

The Indonesian Archipelago has a very complex geological history, along with equatorial warm sea temperature, resulting in diverse types of coral reefs and high diversity of coral reef fish. Many livelihoods of the coastal community are dependent on coral reef fisheries. The present study aimed to determine which region and location in the Indonesian Archipelago has the most diverse and abundant coral reef fish. The archipelago was divided into four regions: the Indian Ocean, Sunda Shelf, Wallacea, and the Pacific Ocean. Data were obtained from a national coral reef monitoring program of the Indonesian Research Center for Oceanography (RCO)-the National Board for Research and Innovation (BRIN). The reef fish data were collected using the underwater visual census method, from 321 belt transects on 24 locations (districts) across the archipelago. The results show that coral reef fish diversity of the Pacific region was the highest across the archipelago for all three trophic levels, i.e., corallivore, herbivore, and carnivore fish. The Pacific Ocean region also had the highest fish abundance for the three trophic levels. Comparison among locations revealed that the best ten locations in reef fish diversity and abundance were Sabang, Mentawai, Makassar, Selayar, Buton, Luwuk, Ternate, Raja Ampat, Biak, and Wakatobi. Wakatobi reefs showed their supremacy in carnivore fish diversity and abundance, while Biak reefs were the best in herbivore fish. The abundance of corallivore fish was also considerably high in Sabang reefs, but it is still lower than in Raja Ampat, Biak, and Wakatobi reefs. These results provide empirical evidence that the coral reefs of Wakatobi and Biak are the hottest hotspots of coral reef fish diversity and abundance in the Indonesian Archipelago.

• Fisheries and Aquatic Sciences
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• 제27권8호
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• pp.501-514
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• 2024

Fishes are found in different lentic and lotic aquatic ecosystems. Determining the composition of fish communities is a crucial component of water quality evaluations and conservation strategies in flowing rivers. The present study is carried out to investigate fish species diversity, richness, and abundance in two second-order streams: Gereb Tsedo (GTS) and Elala in the Tekeze sub-basin. We collected fish with backpack electrofishing during August and December 2013 and March 2014. Fish species richness and the total number of species per stream and per microhabitat were calculated for each stream. Species diversity for each site was calculated using the Shannon index of diversity using the standard formula H' = -Σpi ln (pi). Diversity data among habitats and streams were compared using one-way analysis of variance (ANOVA) and Tukey post hoc comparisons, using the statistical software package STATISTICA 11. A total of 6,554 specimens representing four species: Garra blanfordii, Grra ignestii, Garra dembecha and Garra aethiopica, were caught. They are all indigenous riverine fish species of the family Cyprinidae. Fish abundance was significantly higher in GTS than Elala stream (t-test, t = 1.444, df = 3, p < 0.05). Across the two streams, the overall relative fish abundance was higher in pools, with 53%, followed by runs and riffles with 35% and 12%, respectively. Garra blanfordii was dominant in pools while G. aethiopica was the least dominant. Stream and habitat types were likely the more important driving factors behind the observed patterns of diversity, although the impact of other, not evaluated variables cannot be excluded. Most likely, the observed patterns do not represent a signature of fish dispersal limitation given that almost all species were widely distributed across the study area.

• 생태와환경
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• 제52권3호
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• pp.274-283
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• 2019

청계천에 서식하는 어류 군집의 공간적 변이와 환경과의 관계를 측정하기 위해, 청계천 내 6개 지점을 대상으로 2년간(2014~2015년) 이화학적 요인, 서식처 환경, 어류 군집을 조사하였다. 어류 군집의 공간적 변이는 지점-종 군집 데이터 메트릭스를 기반으로 한 베타다양성 분석을 통해 정량적으로 제시하였다. 또한 청계천 내 전체 군집 변이 값(베타다양성)과 함께 각각의 지점이 청계천 전체 베타다양도에 기여하는 값 (LCBD, Local Contribution to Beta Diversity)도 계산하였다. 데이터 분석의 기반이 되는 지점-종 군집 데이터 테이블은 출현-비출현, 풍부도, 헤링거 변환 값의 세 가지 형태로 적용하였고, 해당 데이터 형태에 따른 베타다양성과 지점별 변이 영향을 각각 계산하여 비교하였다. 헤링거 변환을 통해 계산된 베타다양성 값은 출현-비출현 정보나 풍부도를 바탕으로 한 분석보다 큰 값을 보여주어 공간적 변이를 가장 잘 보여주는 것으로 나타났다. 각 지점별 군집 변이 기여도(LCBD)는 출현-비출현 정보와 해링거 변환을 통한 분석이 유사한 경향을 보여주었다. 자료의 정규성을 가지기 어려운 어류 군집 자료의 경우 풍부도를 이용한 공간 변이 분석은 적절하지 않은 것으로 판단된다. 추가적으로 다양한 환경 요인 및 군집 지수와 베타다양성 기여도 값의 관계를 상관분석을 통해 나타내었다. 해당 지점의 알파다양성 지수와 베타다양성 기여도가 높은 음의 상관관계를 보였고 이는 선행 연구와 유사한 결과이다. 본 연구에 적용한 방법은 매트릭스 형태의 자료를 대상으로 베타다양성 계산과 지점별 군집 변이 기여도를 수치화하는 데 유용한 것으로 나타났다.

• Fisheries and Aquatic Sciences
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• 제26권9호
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• pp.548-557
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• 2023

The purposes of this research were to identify fish species using DNA barcodes or partial sequences of cytochrome b (Cytb) and to assess the diversity of fish in the Mae Tam reservoir, Phayao province, Thailand. Fish samples were collected 3 times, during the winter, summer, and rainy seasons, from 2 sampling sites using gillnets with 3 mesh sizes (30, 50, and 70 mm). A total of 34 representative samples were classified into 12 species, 7 families and 6 orders by morphological- and DNA barcoding-based identifications. However, one cichlid species, Cichlasoma trimaculatum, could only be identified using DNA barcoding. Family Cyprinidae had the greatest diversity, 50.00%. The diversity, richness and evenness indices ranged from 0.43-0.65, 0.64-1.46, and 0.27-0.40, respectively, indicating that fish diversity at both sampling sites was relatively low. A comparison of the catch per unit effort (CPUE) with 3 different mesh sizes found that the 50 mm mesh size was the best (474.80 ± 171.56 g/100 m²/night), followed by the 70 mm (417.41 ± 176.24 g/100 m²/night) and 30 mm mesh sizes (327.88 ± 115.60 g/100 m²/night). These results indicate that DNA barcoding is a powerful tool for species identification. Our data can be used for planning the sustainable management of fisheries resources in the Mae Tam reservoir.

• 한국어류학회지
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• 제25권3호
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• pp.182-184
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• 2013

The 9th Indo-Pacific Fish Conference (IPFC9) was held in Okinawa, Japan from 24th to 28th June 2013. Five hundred and thirty two delegates from 36 countries/regions around the world attended. The Conference took place with a welcome address by Dr. Keiichi Matsuura in the Laguna Garden Hotel next to the Okinawa Convention Center in the evening of 23rd June 2013, one day before the official start of the IPFC9. The winners of the two IPFC9 Bleeker Awards, Jeffrey M. Leis (Ecology) and Gerald R. Allen (Systematics) provided excellent talks on "Change in the early life-history of Indo-Pacific Fishes" and "The center of Indo-Pacific reef fish diversity". A total of 462 papers were presented, including 328 oral and 134 poster presentations. The main themes of IPFC9 included systematics, evolution, zoogeography and phylogeography, biodiversity, ecology, behavior, and conservation. There were 14 symposia, which included topics such as "Top predatory fish in the Indo-Pacific ecosystems", "Fish diversity across environmental extremes", "Ontogeny and systematics of Indo-Pacific fishes", and "Phylogenetics and diversification of the Percomorpha". IPFC10 will be held in Papeete, Tahiti.

• Journal of Ecology and Environment
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• 제48권1호
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• pp.32-48
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• 2024

Background: Longitudinal connectivity in river systems strongly affects biological components related to ecosystem functioning, thereby playing an important role in shaping local biodiversity and ecosystem health. Environmental DNA (eDNA)-based metabarcoding has an advantage of enabling to sensitively diagnose the presence/absence of species, becoming an efficient/effective approach for studying the community structure of ecosystems. However, little attention has been paid to eDNA-based biomonitoring for river systems, particularly for assessing the river longitudinal connectivity. In this study, by using eDNA we analyzed and compared species diversity and composition among artificial barriers to assess the longitudinal connectivity of the fish community along down-, mid- and upstream in the Hotancheon from the Geum River basin. Moreover, we investigated temporal variation in eDNA fish community structure and species diversity according to season. Results: The results of species detected between eDNA and conventional surveys revealed higher sensitivity for eDNA and 61% of species (23/38) detected in both methods. The results showed that eDNA-based fish community structure differs from down-, mid- and upstream, and species diversity decreased from down to upstream regardless of season. We found that there was generally higher species diversity at the study sites in spring (a total number of species across the sites [n] = 29) than in autumn (n = 27). Nonmetric multidimensional scaling and heatmap analyses further suggest that there was a tendency for community clusters to form in the down-, mid- and upstream, and seasonal variation in the community structure also existed for the sites. Dominant species in the Hotancheon was Rhynchocypris oxycephalus (26.07%) regardless of season, and subdominant species was Nipponocypris koreanus (16.50%) in spring and Odontobutis platycephala (15.73%) in autumn. Artificial barriers appeared to negatively affect the connectivity of some fish species of high mobility. Conclusions: This study attempts to establish a biological monitoring system by highlighting the versatility and power of eDNA metabarcoding in monitoring native fish community and further evaluating the longitudinal connectivity of river ecosystems. The results of this study suggest that eDNA can be applied to identify fish community structure and species diversity in river systems, although some shortcomings remain still need to be resolved.

• 환경영향평가
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• 제20권6호
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• pp.845-856
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• 2011

In order to establish fundamental data for stream restoration and environmental flow, we investigated inhabitation and species diversity of fish to substrate size in the typical streams of Geum River Basin. Field monitoring including fish sampling was conducted from October 2007 to October 2009. Substrate size was determined according to six different : silt (Si), sand (Sa), fine gravel (Fg), coarse gravel (Cg), cobbles (Co) and boulders (Bo). A total number of fish caught in the 18 sites was 7,649 representing 10 families 50 species, and Si, Sa, Fg, Cg, Co and Bo stations occupied 30, 29, 38, 30, 27 and 17 species, respectively. The most frequently found species in number was pale chum (Zacco platypus, 29.7%, n=2,275) followed by Z. koreanus (22.5%, n=1,720) in total stations. Biological diversity with increase of substrate size from the dominance of part species showed higher values as dominance index, lower and diversity, richness and evenness index. Index of biological integrity (IBI) and qualitative habitat evaluation index (QHEI) scores decreased with increase of substrate size. Therefore, it is necessary to make an effort on stream rehabilitation with evaluation of physical habitat condition by indicator species in order to maintain biodiversity and perform ecological restoration.

• 한국환경과학회지
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• 제21권11호
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• pp.1361-1369
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• 2012

A biological assessments of fish community structure were carried out in the lower reach of Seomjin River from May 2009 to November 2010. The collected fish from the six surveyed sites were 63 species belonging to 24 families, and 10 orders. Although species was different depending on sites, the numbers of individuals were not shown significance on sites. Locational dominant species were different. For example, the dominant species on May were Zacco platypus at W-1, Zacco temminckii at W-2, Acanthogobius flavimanus at W-3 and W-4, and Leiognathus nuchalis at W-5 and W-6. There is no seasonal differences in species. Species diversity was the best up to 2.64 on May at W-1 from 1.33 on November at W-6. As a result of an analysis about environmental factors for the numbers of fish species and individuals in each surveyed sites, the most effective groups were DO, BOD, and COD. The proportional difference was high on May than November between transient and asymptotic projections for population size and population growth rate for simulations starting at the current or theoretical stage distribution.

• Journal of Microbiology and Biotechnology
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• 제33권11호
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• pp.1412-1419
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• 2023

Retroviral integration into ancient vertebrate genomes left traces that can shed light on the early history of viruses. In this study, we explored the early evolution of retroviruses by isolating nine Spuma endogenous retroviruses (ERVs) and one Epsilon ERV from the genomes of Agnatha and Chondrichthyes. Phylogenetic analysis of protein sequences revealed a striking pattern of co-evolution between jawless fish ERV and their host, while shark ERV underwent ancient cross-class viral transmission with jawless fish, ray-finned fish, and amphibians. Nucleotide sequence analysis showed that jawless fish ERV emerged in the Palaeozoic period, relatively later than ray-finned fish ERV. Moreover, codon analysis suggested that the jawless fish ERV employed an infection strategy that mimics the host codon. The genealogical diversity of ERVs in the jawless fish genome highlights the importance of studying different viral species. Overall, our findings provide valuable insights into the evolution of retroviruses and their interactions with their hosts.