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A bio-text mining system using keywords and patterns in a grid environment

  • Kwon, Hyuk-Ryul;Jung, Tae-Sung;Kim, Kyoung-Ran;Jahng, Hye-Kyoung;Cho, Wan-Sup;Yoo, Jae-Soo
    • Proceedings of the Korea Society for Industrial Systems Conference
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    • 2007.02a
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    • pp.48-52
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    • 2007
  • As huge amount of literature including biological data is being generated after post genome era, it becomes difficult for researcher to find useful knowledge from the biological databases. Bio-text mining and related natural language processing technique are the key issues in the intelligent knowledge retrieval from the biological databases. We propose a bio-text mining technique for the biologists who find Knowledge from the huge literature. At first, web robot is used to extract and transform related literature from remote databases. To improve retrieval speed, we generate an inverted file for keywords in the literature. Then, text mining system is used for extracting given knowledge patterns and keywords. Finally, we construct a grid computing environment to guarantee processing speed in the text mining even for huge literature databases. In the real experiment for 10,000 bio-literatures, the system shows 95% precision and 98% recall.

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A Study on the Application of Knowledge-based Service in Procurement Engineering (구매엔지니어링을 위한 지식기반 서비스 적용 방안에 관한 연구)

  • Kim, Jinil;Cha, Jaemin;Shin, Joonguk;Yeum, Choongseup
    • Journal of the Korean Society of Systems Engineering
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    • v.14 no.2
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    • pp.67-72
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    • 2018
  • In the EPC(Engineering Procurement and Construction) project of the plant, procurement engineering has a profound effect on the profitability of the project. It is important that the procurement specifications are well written to ensure that procurement engineering works properly. In the meantime, the procurement specifications have been created by the experience of the person in charge because there was no system for helping procurement engineering. To cope with this situation, we are developing a procurement engineering management support system (PeMSS). This paper describes how to implement a knowledge-based service in the procurement engineering management support system. First, we briefly introduce the PeMSS, the knowledge base application field, and how to apply it. The parts that requires knowledge-based service are parsing the requirements in the PDF (Portable Document Format) file and management of the document provided by the supplier of the equipment.

Commercial BIM Platform Integration-framework and Application Web Development - Focusing on Autodesk Forge API and Bentley Systems iTwin API - (상용 BIM 플랫폼 연계 프레임워크 및 응용 웹 개발 - Forge API 및 iTwin API를 중심으로 -)

  • Kim, Myeong-Hwan;Choi, Yung-Ki
    • Journal of KIBIM
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    • v.14 no.1
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    • pp.11-21
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    • 2024
  • This study is about a case of web application development using representative commercial BIM platform-linked APIs from Autodesk and Bentley Systems. The development method was aimed at application development using Autodesk's Forge API and Bentley System's iTwin API. The specific development content was limited to the Model Viewer, Issues, and File Transfer API, and the administrator's site. The first research result is that parts with different internal configurations of commercial platforms were independently modularized and developed, and the common front-end was unified. The second research result is that a web front-end technology, was used to visualize 3D models using the viewer API, and the possibility of additional application expansion was discovered.

Development of Monte Carlo Simulation Code for the Dose Calculation of the Stereotactic Radiosurgery (뇌 정위 방사선수술의 선량 계산을 위한 몬테카를로 시뮬레이션 코드 개발)

  • Kang, Jeongku;Lee, Dong Joon
    • Progress in Medical Physics
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    • v.23 no.4
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    • pp.303-308
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    • 2012
  • The Geant4 based Monte Carlo code for the application of stereotactic radiosurgery was developed. The probability density function and cumulative density function to determine the incident photon energy were calculated from pre-calculated energy spectrum for the linac by multiplying the weighting factors corresponding to the energy bins. The messenger class to transfer the various MLC fields generated by the planning system was used. The rotation matrix of rotateX and rotateY were used for simulating gantry and table rotation respectively. We construct accelerator world and phantom world in the main world coordinate to rotate accelerator and phantom world independently. We used dicomHandler class object to convert from the dicom binary file to the text file which contains the matrix number, pixel size, pixel's HU, bit size, padding value and high bits order. We reconstruct this class object to work fine. We also reconstruct the PrimaryGeneratorAction class to speed up the calculation time. because of the huge calculation time we discard search process of the ThitsMap and used direct access method from the first to the last element to produce the result files.

An Evaluation of Multimedia Data Downstream with PDA in an Infrastructure Network

  • Hong, Youn-Sik;Hur, Hye-Sun
    • Journal of Information Processing Systems
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    • v.2 no.2
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    • pp.76-81
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    • 2006
  • A PDA is used mainly for downloading data from a stationary server such as a desktop PC in an infrastructure network based on wireless LAN. Thus, the overall performance depends heavily on the performance of such downloading with PDA. Unfortunately, for a PDA the time taken to receive data from a PC is longer than the time taken to send it by 53%. Thus, we measured and analyzed all possible factors that could cause the receiving time of a PDA to be delayed with a test bed system. There are crucial factors: the TCP window size, file access time of a PDA, and the inter-packet delay that affects the receiving time of a PDA. The window size of a PDA during the downstream is reduced dramatically to 686 bytes from 32,581 bytes. In addition, because flash memory is embedded into a PDA, writing data into the flash memory takes twice as long as reading the data from it. To alleviate these, we propose three distinct remedies: First, in order to keep the window size at a sender constant, both the size of a socket send buffer for a desktop PC and the size of a socket receive buffer for a PDA should be increased. Second, to shorten its internal file access time, the size of an application buffer implemented in an application should be doubled. Finally, the inter-packet delay of a PDA and a desktop PC at the application layer should be adjusted asymmetrically to lower the traffic bottleneck between these heterogeneous terminals.

Development of three-dimensional sound effects system for virtual reality (가상환경용 3차원 입체음향 시스템 개발)

  • Yang, Si-Young;Kim, Dong-Hyung;Jeong, Je-Chang
    • Journal of Broadcast Engineering
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    • v.13 no.5
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    • pp.574-585
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    • 2008
  • 3D sound is of central importance for the virtual reality system, and is becoming increasingly important for the auditory displays and for the human-computer interaction. In this paper, we propose a novel real-time 3D sound representation system for virtual reality. At first, we propose a calculation method of the impulse response for virtual space. To transmit the information of the virtual space, we propose an enhanced DXF file type that contains the material information. And then, we implement the multi-channel sound panning system. we perform the experiment based on computer simulation and prove the utility of the proposed method.

Computerization of the Central National Library; Development of Korean MARC System (국립중앙도서관 자료관리의 전산화연구 -기계가독목록의 개발과 활용-)

  • Chung Young Mee;Hyeon Kyu Seob
    • Journal of the Korean Society for Library and Information Science
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    • v.8
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    • pp.3-72
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    • 1981
  • The necessity of computerizing the Central National Library of Korea has been widely recognized. The purpose of this research is to develop Korean Machine Readable Cataloging system as a first step toward an integrated library system and suggests the ways of utilizing the MARC file in Korean libraries as well as in the Central National Library. In this paper the following studies are included: 1. An analysis of the functions and current procedures of the Central National Library 2. Development of a standard record format for KOR MARC 3. Production and utilization of KOR MARC files 4. Identification of problems in developing KOR MARC system In conclusion, the following recommendations are made: 1. Standardization of the internal code and input/output equipments should be proceded for hangul and chinese data processing. 2. The libraries planning or having accomplished computerization process should be cooperative in standardizing and distributing bibliographic data bases including KOR MARC tapes. 3. Training of competent librarians and strong support from the government are required for a successful implementation of the Library's computerization project.

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A Transformation Method of Polygon Data for Visualization of Height Map in SEDRIS (SEDRIS에서 높이맵의 가시화를 위한 폴리곤 데이터 변환 방법)

  • Son, Hyun-Seung;Kim, Young-Chul
    • The Journal of the Institute of Internet, Broadcasting and Communication
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    • v.15 no.6
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    • pp.135-140
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    • 2015
  • The Cyber-Physical Systems (CPS) complexly perform modeling and simulation (M&S) for the various embedded systems. In this case, due to use diverse formatted models, we suggest to apply with the SEDRIS to systematically manage the different formatted data on M&S. The SEDRIS can reduce time and cost with reusing and interoperating environment data developed in the specific domain. To do this, we should input the data transformed the height map for terrain representation in a simulator into raster data of SEDRIS for which interoperate between the existed simulator and the SEDRIS. To solve the problem, we propose the transformation method to transfer the polygon data from RAW file used in terrain representation. With the proposed method, we can provide two advantages. First, it can possibly express the environment data into SEDRIS. Second, we can see the terrain like an image file through a viewer. Therefore, even non-expert easily constructs the terrain environment data.

COMPARISON OF THE SEALING ABILITY OF VARIOUS RETROGRADE FILLING MAIERIALS (수종의 역충전 재료의 치근단 밀폐력 비교)

  • 황윤찬;강인철;황인남;오원만
    • Restorative Dentistry and Endodontics
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    • v.26 no.5
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    • pp.379-386
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    • 2001
  • This study was performed to evaluate the sealing ability of various retrograde filling materials by using bacterial penetration and dye penetration test. One hundred and forty extracted human teeth with single, straight canals and mature apiece were collected and used for this study. All canals were instrumented using an engine driven Ni-Ti file (ProFile). After removing 3mm from the apex of tooth, a standardized 3mm root end cavity was prepared using an ultrasonic instrument. The 70 teeth were randomly divided into 7 groups : 6 groups for retrograde filling using Super-EBA, ZOE, Chelon-Silver, IRM, ZPC and amalgam. The 7th group was used as a negative control. Nail varnish was applied to all external root surfaces to the level of the reseated root ends to prevent lateral microleakages. The specimens were then sterilized in an ethylene oxide sterilizer for 24 hours. 2 mm of the reseated root was immersed in a culture chamber containing a Tripticase Soy Broth with a phenol red indicator. The coronal access of each specimen was inoculated every 72 hours with suspension of Proteus vulgaris. The culture media were observed every 24hours for color change indicating bacterial contamination. The specimens were observed for 4weeks. The remaining 70 teeth were submitted to a dye penetration test. The canals of all teeth were first sealed with AH26 and obturated using an Obtura II system. Root resection, root end preparation and retrograde filling was performed as above. All specimens were suspended in 2% methylene blue dye for 72 hours before being ion gitudinally split. The degree of dye penetration was then measured using a stereomicroscope at 10 magnification and evaluated. The results were as floows : 1. In the bacterial penetration, the degree of leakage was the lowest in the Super-EBA, followed by, in ascending order, ZOE, Chelon-Silver IRM and ZPC. The amalgam showed highest bacterial leakage of all(p<0.01). 2. In the dye penetration, the degree of microleakage was the lowest in the Chelon-Silver and Super-EBA, followed by, in ascending order, IRM, ZPC. The ZOE and amalgam showed the highest microleakage of all (p<0.05). These results suggested that the eugenol based cement, Super-EBA, have excellent sealing ability as a retrograde filling material.

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CAD Based Robot Off-line Programming for Shoe Adhesive Application System (신발 접착제 도포 시스템을 위한 CAD 기반 로봇 오프라인 프로그래밍)

  • 윤중선;차동혁;김진영
    • Journal of Institute of Control, Robotics and Systems
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    • v.10 no.7
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    • pp.643-648
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    • 2004
  • Most of shoes manufacturing processes are not yet automated, which puts restrictions on the increase of productivity. Among them, adhesive application processes particularly are holding the most workers and working hours. In addition, its working conditions are very poor due to the toxicity of adhesive agents. In case of automating adhesive application processes by using robots, the robot teaching by playback is difficult to produce high productivity because the kinds of shoes to be taught mount up to several thousands. Therefore, it is essential to generate the robot working paths automatically according to the kind, the size, and the right and left of shoes, and also to teach them to the robot automatically. This study deals with automated adhesive spraying to shoe outsoles and uppers by using a robot, and develops the program to generate three-dimensional robot working paths off-line based on CAD data. First, the three-dimensional data of an outsole outline or an upper profiling line are extracted from the two-dimensional CAD drawing file or the three-dimensional scanner. Next, based on the extracted data and the nozzle conditions for adhesive spraying, a robot working path is generated automatically. This research work is the core in automating adhesive spraying processes, and will do much for increasing productivity of shoes manufacturing.