• 제목/요약/키워드: evolution family

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Genomic Features of Retroelements and Implications for Human Disease

  • Kim, Heui-Soo
    • Genomics & Informatics
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    • 제3권4호
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    • pp.133-141
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    • 2005
  • Most of the endogenous retroviral genes integrated into the primate genome after the split of New World monkeys in the Oligocene era, approximately 33 million years ago. Because they can change the structure of adjacent genes and move between and within chromosomes they may play important roles in evolutionas well as in many kinds of disease and the creation of genetic polymorphism. Comparative analysis of HERVs (human endogenous retroviruses) and their LTR (long terminal repeat) elements in the primate genomes will help us to understand the possible impact of HERV elements in the evolution and phylogeny of primates. For example, HERV-K LTR and SINE-R elements have been identified that have been subject to recent change in the course of primate evolution. They are specific elements to the human genome and could be related to biological function. The HERV-M element is related to the superfamily of HERV-K and is integrated into the periphilin gene as the truncated form, 5'LTR-gag-pol-3'LTR. PCR and RT-PCR approaches indicated that the insertion of various retrotransposable elements in a common ancestor genome may make different transcript variants in different primate species. Examination of the HERV-W elementrevealed that env fragments were detected on human chromosomes 1, 3-7, 12, 14, 17, 20, and X, whilst the pol fragments were detected on human chromosomes 2-8, 10-15, 20, 21, X, and Y. Bioinformatic blast search showed that almost full-length of the HERV-W family was identified on human chromosomes 1-8, 11-15, 17, 18, 21, and X. Expression analysis of HERV-W genes (gag, pol, and env) in human tissues by RT-PCR indicated that gag and pol were expressed in specific tissues, whilst env was constituitively expressed in all tissues examined. DNA sequence based phylogenetic analysis indicated that the gag, pol and env genes have evolved independently during primate evolution. It will thus be of considerable interest to expand the current HERV gene information of various primates and disease tissues.

한국산 참서대과 Cynoglossidae 어류 6종의 상두개골계(epicranical bony system) (Epicranial Bony System of Six Species in Family Cynoglossidae (Pisces, Pleuronectiformes) from Korea)

  • 최윤;김익수
    • Animal Systematics, Evolution and Diversity
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    • 제11권3호
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    • pp.329-334
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    • 1995
  • 1992년부터 1994년까지 우리나라의 연안에서 채집된 참서대과 어류 6종의 상두개골계(epicranical bony system) 에 대해 비교 검토하였다. 상두개골 가운데 erisma 와 frontal element 의 발달정도에 따라 1. Paraplagusia japonica, 2.Cynogossus joyneri 와 C.robustus, 3.c. semilaveis와 C. abbreviatus, 4.C. interruptus 의 4 group 으로 구분되엇고, erisma를 지지하는 proximal radials 의 수에서도 P.japonica와 C. robustus 가 10-11개, C. joyneri 10-12 . C. semilaevis 9-11. C. abbreviatus 9-10 , C. interruptus 7-8개로 종간에 많은 차이를 나타냈다. 이러한 골격의 형태적 차이는 종간의 유연관계를 나타내는데 중요한 형질로 사료된다.

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Human RPS4X/Y Genes and Pseudogene Family: Chromosomal Localization and Phylogenetic Analysis

  • Lee, Ji-Won;Yi, Joo-Mi;Shin, Kyung-Mi;Kim, Heui-Soo
    • Journal of Life Science
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    • 제11권2호
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    • pp.81-82
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    • 2001
  • The human ribosomal protein 54 genes, RPS4X and RPS4Y are located on the X and Y chromosomes. They have been postulated as candidate for Turner syndrome which was characterized by gonadal dysgenesis, short stature, and various external and internal anomalies. Using the BLAST search program, we identified sixteen RPS4 pseudogenes from the human genome and analyzed them phylogenetically. The RPS4-C12-1, C12-2, and C12-3 pseudogenes from chromosome 12 have been evolved independently during hominid evolution. The RPS4X gene from X chromosome it closely related to the RPS4-C12-2 from chromosome 12 and RPS4-C5 from chromosome 5, whereas the RPS4Y gene is very closely related to RPS4-C16 from chromosome 16. The exact mapping of the RPS4 pseudogene family was peformed, indicating that the RPS4 pseudogene family was mapped on human chromosomes 1, 2, 5, 6, 8, 10, 11, 12, 13, 16, 18, 19 and 20. Taken together, the precise chromosomal localization and phylegenetic relationship of the RPS4 pseudo-genes could be of great use in further study for understanding the Turner syndrome.

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Photometric study of Main-belt asteroid (298) Baptistina

  • Kim, Dong-Heun;Kim, Myung-Jin;Lee, Hee-Jae;Kaplan, Murat;Erece, Orhan;Kim, Taewoo;Yoon, Joh-Na;Marciniak, Anna;Moon, Hong-Kyu;Choi, Young-Jun;Kim, Yonggi
    • 천문학회보
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    • 제46권2호
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    • pp.48.1-48.1
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    • 2021
  • The Main-belt asteroid (298) Baptistina (hereafter 'Baptistina') is regarded as an X- (or C-) type asteroid and the largest member of the Baptistina asteroid family. Its basic physical properties play an important role in understanding the rotational evolution and orbital dynamics of the Baptistina family. In this study, we determined the physical characteristics of Baptistina from the optical observations. We conducted BVRI and R band photometric observations from 2017 to 2021 for a total of 47 nights using the 0.5 - 2.0 m-class telescopes. As a result, the color indices of Baptistina were derived as, , and ; this result is consistent with the previous classification of Baptistina as an X- (or C-) type. We also determined absolute magnitude () and slope parameter () by using a simplified version of the IAU H & G function (Bowell et al. 1989) are mag and respectively. We calculated the effective radius of Baptistina of km considering the visual geometric albedo of 0.131 from the NEOWISE data. Using the light-curve inversion method, the sidereal rotation period of 16.224235 h and the 3D shape model with a pole orientation (,) were also determined. In this presentation we will introduce our observations and results, and also discuss about the physical properties of Baptistina asteroid family members such as color indices.

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Copepods of the Family Artotrogidae (Siphonostomatoida) from Korea, with Descriptions of Eight New Species

  • Jimin Lee;Il-Hoi Kim
    • Animal Systematics, Evolution and Diversity
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    • 제39권4호
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    • pp.176-211
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    • 2023
  • Nine copepod species of the family Artotrogidae Brady, 1880 are described or redescribed from Korea. Included new species are two in the genus Artotrogus Boeck, 1859, one each in the genera Bradypontius Giesbrecht, 1895, Cryptopontius Giesbrecht, 1899, Neopontius Scott T., 1898 and Chejupontius n. gen., and two in the genus Sewellopontius Ummerkutty, 1966. Chejupontius n. gen. resembles Ascidipontius Kim I. H., 1996, Pulicitrogus Kim I. H., 1998, and Sewellopontius in having reduced armature of leg 1, but is distinguished from these and other genera of the family by the large, mediodistally expanded protopod of leg 5 and by a combination of characters exhibited in leg 1 that the first exopodal segment lacks an inner seta, the second exopodal segment lacks an outer spine, the third exopodal segment is armed with three spines plus one to three setae, and the second endopodal segment is armed with a single inner seta. Pteropontius cristatus Giesbrecht, 1895 known previously only from the Mediterranean Sea is redescribed, based on a newly collected specimen from Korea, and P. trimerus Kim I. H., 1996 is removed to the genus Sewellopontius. A short note is given for the epibiotic suctorian Thecacineta calix (Schroder, 1907) which was found attached to the antennule of a new copepod species.

Morjorie M. Brown의 가정과 교과과정 모형에 근거한 ‘인간발달과 가족관계’ 영역의 학습지도안 개발 (Lesson Plan Development Based on Marjorie M. Brown’s Home Economics Curriculum Paradiam in Area of Human Development and Family Relationship)

  • 장혜경;유태명
    • 한국가정과교육학회지
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    • 제6권2호
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    • pp.109-131
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    • 1994
  • This study developed and proposed a lesson plan for the area of “Human development and family relationship”in secondary home economics curriculum. In current educational practice in secondary home economics curriculum, the employed goal and the nature of home economics are neither stated specifically nor closely interrelated. This problem has led us not being able to achieve pursuing goal of home economics education and to employ appropriate teaching methods. In view of this situation, the purpose of this study was to propose a lesson plan reflecting the contents and teaching methods to overcome difficulties and inefficiency in the current practice of secondary home economics education. The theoretical background of the lesson plan was based on the Marjorie M. Brown’s philosophy of home economics which can be summerized as follows: 1. The goal of home economics is to help individuals and families to become autonomous in their own family life and to be more capable of interacting with others in behalf of well-being of the family and of social evolution toward a free society. 2. The characteristics of home economics is conceptualized as practical science and personal service profession. 3. the nature of problems which home economics should deal with is perennial and practial. 4. Practial reasoning composed of historical understanding, critical action, and reflective thinking is appropriate for the previously mentioned goal and characteristics of home economics and for dealing with perennial practial problems. The lesson plan was proposed for one of perennial problem, “How should we understand, create, and maintain our family culture\ulcorner”by employing practial reasoning and teaching models such as “role play”and “classroom meeting.”

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Wind-induced fragility assessment of urban trees with structural uncertainties

  • Peng, Yongbo;Wang, Zhiheng;Ai, Xiaoqiu
    • Wind and Structures
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    • 제26권1호
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    • pp.45-56
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    • 2018
  • Wind damage of urban trees arises to be a serious issue especially in the typhoon-prone areas. As a family of tree species widely-planted in Southeast China, the structural behaviors of Plane tree is investigated. In order to accommodate the complexities of tree morphology, a fractal theory based finite element modeling method is proposed. On-site measurement of Plane trees is performed for physical definition of structural parameters. It is revealed that modal frequencies of Plane trees distribute in a manner of grouped dense-frequencies; bending is the main mode of structural failure. In conjunction with the probability density evolution method, the fragility assessment of urban trees subjected to wind excitations is then proceeded. Numerical results indicate that small-size segments such as secondary branches feature a relatively higher failure risk in a low wind level, and a relatively lower failure risk in a high wind level owing to windward shrinks. Besides, the trunk of Plane tree is the segment most likely to be damaged than other segments in case of high winds. The failure position tends to occur at the connection between trunk and primary branches, where the logical protections and reinforcement measures can be implemented for mitigating the wind damage.

On the use of time-dependent success criteria within risk-informed analyses. Application to LONF-ATWS sequences in PWR reactors

  • Jorge Sanchez-Torrijos;Cesar Queral;Carlos Paris;Maria Jose Rebollo;Miguel Sanchez-Perea;Jose Maria Posada
    • Nuclear Engineering and Technology
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    • 제54권12호
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    • pp.4601-4619
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    • 2022
  • The classical Probabilistic Safety Analysis (PSA) does not include any time dependence explicitly. However, the success criteria (SC) could evolve during the cycle for some initiating events. In that sense, there is a type of sequence in which this time-dependency is quite important, the family of Anticipated Transient without Scram (ATWS) sequences in Pressurized Water Reactors. Therefore, a new risk-informed approach is proposed in this paper, which makes it possible to obtain the time-dependent SC evolution of the safety functions affected by the Moderator Temperature Coefficient (MTC) value. Then, the evolution of the ATWS conditional core damage probability (CCDP) could be obtained using a PSA model. To quantify the CCDP, the average values of the time-dependent failure probabilities must be computed. Finally, the comparison between the CCDP obtained through the application of the classical PSA approach and the new one makes it possible to quantify the impact of time-dependence on the SC of the headers that this new risk-informed ATWS approach can provide.

Molecular Characterization of the HERV-W Env Gene in Humans and Primates: Expression, FISH, Phylogeny, and Evolution

  • Kim, Heui-Soo;Kim, Dae-Soo;Huh, Jae-Won;Ahn, Kung;Yi, Joo-Mi;Lee, Ja-Rang;Hirai, Hirohisa
    • Molecules and Cells
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    • 제26권1호
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    • pp.53-60
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    • 2008
  • We characterized the human endogenous retrovirus (HERV-W) family in humans and primates. In silico expression data indicated that 22 complete HERV-W families from human chromosomes 1-3, 5-8, 10-12, 15, 19, and X are randomly expressed in various tissues. Quantitative real-time RT-PCR analysis of the HERV-W env gene derived from human chromosome 7q21.2 indicated predominant expression in the human placenta. Several copies of repeat sequences (SINE, LINE, LTR, simple repeat) were detected within the complete or processed pseudo HERV-W of the human, chimpanzee, and rhesus monkey. Compared to other regions (5'LTR, Gag, Gag-Pol, Env, 3'LTR), the repeat family has been mainly integrated into the region spanning the 5'LTRs of Gag (1398 bp) and Pol (3242 bp). FISH detected the HERV-W probe (fosWE1) derived from a gorilla fosmid library in the metaphase chromosomes of all primates (five hominoids, three Old World monkeys, two New World monkeys, and one prosimian), but not in Tupaia. This finding was supported by molecular clock and phylogeny data using the divergence values of the complete HERV-W LTR elements. The data suggested that the HERV-W family was integrated into the primate genome approximately 63 million years (Myr) ago, and evolved independently during the course of primate radiation.

Alu 서열과 분자생물학적 특징 (Alu sequences and molecular features)

  • 박은실;홍경원;김희수
    • 생명과학회지
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    • 제14권6호
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    • pp.1028-1039
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    • 2004
  • 6500만년동안, Alu 서열은 RNA-중합효소 III에 의한 전사체를 통해 증폭해왔고, 영장류 게놈 내에 약 140만 복사의 수에 도달되었다. 그들은 가동성 인자 중에서 가장 큰 집단이며, 인간 게놈의 $10\%$를 구성한다. Alu 서열이 유전적으로 기능이 없다고 생각되었지만, 최근 많은 연구자들이 새로운 기능 및 질병과의 관련성을 증명해왔다 이들 Alu 서열은 삽입돌연변이, Alu-매개 재조합, 유전자 발현에 대해 유전자 전환 그리고 스플라이싱 사이트를 유발하고, 유전자 구조, 단백질 서열, 스플라이싱 모티프와 발현 양상에 영향을 준다. 우리는 Alu의 구조와 기원, 그들 패밀리의 컨센서스 서열, Alu의 진화와 분포 그리고 그들의 기능에 대하여 요약 정리하였다. 또한 영장류의 진화과정에 있어 질병과 관련하여 Alu 패밀리의 새로운 연구방향을 제시하였다.