• Title/Summary/Keyword: discriminate

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PLUG-IN MODULES ON PLUTO FOR IDENTIFYING INFLAMMATORY NODULES FROM LUNG NODULES IN CHEST X-RAY CT IMAGES

  • Hirano, Yasushi;Seki, Nobuhiko;Eguchi, Kenji
    • Proceedings of the Korean Society of Broadcast Engineers Conference
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    • 2009.01a
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    • pp.794-798
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    • 2009
  • We introduce an implementation of plug-ins on PLUTO. These plug-ins discriminate inflammatory nodules from other types of nodules in chest X-ray CT images. The PLUTO is a common platform for computer-aided diagnosis systems on Microsoft Windows series and it is easy to add new functions as plug-ins. We coded two plug-ins. One of the them calculates features based on medical knowledge. The other plug-in calculates parameters to classify the type of nodules, and it also classifies nodules into inflammatory nodules and others using SVM. These plug-ins are coded using MIST library which is produced at Nagoya University, Japan. In our previous study, the MIST library was parallelized, so that we can utilize a number of CPUs to calculate features and SVM learning/classifying depending on the amount of computation. Using these plug-ins, it became easy to extract features to discriminate inflammatory nodules from other types of nodules and to change parameters for feature extraction and SVM learning/classifying with GUI interface. The accuracy of the classifying result is 100% with 78 solid nodules which contains 43 inflammatory nodules and 35 other type of nodules.

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Discrimination of geographical origin and cultivation years of Ginseng by near Infrared reflectance spectroscopy

  • Lin, Guo-Lin;Sohn, Mi-Ryeong;Cho, Rae-Kwnag;Hong, Jin-Hwan
    • Near Infrared Analysis
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    • v.1 no.2
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    • pp.41-44
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    • 2000
  • The objectives of this study are to discriminate the geographical origin and cultivation years of ginseng based on the near-infrared(NIR) reflectance spectroscopic analysis. Korea and China ginseng samples were prepared for discrimination of geographical origin. 4, 5 and 6 years-old ginseng samples from Korea were prepared for discrimination of cultivation years. Used spectrometer were InfraAlyzer 500, InfraAlyzer 400 and Fiber optic. Sample type of ginseng was 3, whole ginseng radix, slide section and powder type. The accuracy was affected by sample types and instruments. The accuracy for discrimination geographical origin was 97% in calibration model using IA 500 and ginseng powder. For discrimination of cultivation years, the model with slide selection using IA500 were relative accurate. The accuracy was 96.7% for 4-year, 91.3% for 5-year and 89.3% for 6-year old ginseng. The study shows that NIR spectroscopic analysis can be used to discriminate the geographical origin and cultivation years of ginseng with acceptable accuracy.

Detection of Korean Native Honey and European Honey by Using Duplex Polymerase Chain Reaction and Immunochromatographic Assay

  • Kim, Chang-Kyu;Lee, Deug-Chan;Choi, Suk-Ho
    • Food Science of Animal Resources
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    • v.37 no.4
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    • pp.599-605
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    • 2017
  • Korean native honey (KNH) is much more expensive than European honey (EH) in Korea, because KNH is a favored honey which is produced less than EH. Food fraud of KNH has drawn attention of the government office concerned, which is in need of a method to differentiate between KNH and EH which are produced by the Asiatic honeybee, Apis cerana and the European honeybee, Apis mellifera, respectively. A method to discriminate KNH and EH was established by using duplex polymerase chain reaction (PCR) in this study. Immunochromatographic assay (IC) was examined to analyze the duplex PCR product. The DNA sequences of primers for the duplex PCR were determined by comparing cytochrome C oxidase genes of the two honey bee species. Chelex resin method was more efficient in extracting genomic DNA from honey than the other two procedures of commercial kits. The duplex PCR amplifying DNA of 133 bp were more sensitive than that amplifying DNA of 206 bp in detecting EH in the honey mixture of KNH and EH. Agarose gel electrophoresis and IC detected the DNA of 133 bp at the ratios of down to 1% and 5% EH in the honey mixture, respectively and also revealed that several KNH products distributed by internet shopping sites were actually EH. In conclusion, the duplex PCR with subsequent IC could also discriminate between KNH and EH and save time and labor.

Detection of Colletotrichum acutatum and C. gloeosporioides by Real Time PCR (Real Time PCR을 이용한 Colletotrichum acutatum과 C. gloeosporioides의 검출)

  • Kim, Seung-Han;Kwon, Oh-Hun
    • Research in Plant Disease
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    • v.14 no.3
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    • pp.219-222
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    • 2008
  • Real time PCR was used to discriminate Colletotrichum acutatum and C. gloeosporioides for analysis of population density. Two primers, caInt2 and cgint, used for conventional PCR to discriminate two species were modified with fluorescent dye to make probe for real time PCR. Fluorescence signals were successfully detected by fCaInt2 and vCgint probe coupled with primer pair Unicon and Unicor1 resulting in discrimination of C. acutatum and C. gloeosporioides by comparison of delta Rn value.

Discrimination and Genetic Diversity of Acanthopanax senticosus Using RAPD Markers (RAPD마커를 이용한 가시오갈피의 기원판별 및 유전적 다양성)

  • Huh Man Kyu;Choi Yung Hyun;Choi Byung Tae;Kim Gyeong Cheol
    • Journal of Physiology & Pathology in Korean Medicine
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    • v.19 no.4
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    • pp.1046-1049
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    • 2005
  • Acanthopanx senticosus (Araliaceae) is a long-lived woody species primarily distributed throughout East Asia. This species is regarded as medically and ecologically important woody plants in Korea. To identify the variation of the RAPD patterns between domestic and foreign A. senticosus species, 22 random primers were applied to Korean A. senticosus and A. senticosus for. inermis, Chinese and Russian A. senticosus. Six primers of them could be used to discriminate the origins and 58 polymorphisms among 92 scored DNA fragments. Six bands are specific for Korean A. senticosus and A. senticosus for. inermis. Especially, three primers, OPD04, OPD11 and OPE10, were useful to differentiate between domestic and foreign Acanthopanax species. RAPD analysis was a useful method to discriminate among A. senticosus populations or accessions and Korean accessions are distinct genetically.

Identification of Marker Compounds for Discriminating between Embryogenic and Nonembryogenic Calluses of Higher Plants Using Pyrolysis Gas Chromatography Mass Spectrometry and Genetic Programming

  • Kim Suk-Weon;Ban Sung-Hee;Yoo Ook-Joon;Liu Jang-Ryol
    • Biotechnology and Bioprocess Engineering:BBE
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    • v.11 no.1
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    • pp.38-42
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    • 2006
  • When whole cells are subjected to pyrolysis gas chromatography/mass spectrometry (Py-GC/MS) analysis, it provides biochemical profiles containing overlapping signals of the majority of compounds. To determine marker compounds that discriminate embryogenic calluses from nonembryogenic calluses, samples of embryogenic and nonembryogenic calluses of five higher plant species were subjected to Py-GC/MS. Genetic programming of Py-GC/MS data was able to discriminate embryogenic calluses from nonembryogenic calluses. The content ratio of 5-meyhyl-2-furancarboxaldehyde and 5-(hydroxymethyl)-2-furancarboxaldehyde was greater in nonembryogenic calluses than in embryogenic calluses. However, the content ratio of phenol, p-cresol, and $^1H-indole$ in embryogenic calluses was 1.2 to 2.4 times greater than the ratio in nonembryogenic calluses. These pyrolysates seem to be derived from the components of the cell walls, which suggests that differences in cell wall components or changes in the architecture of the cell wall playa crucial role in determining the embryogenic competence of calluses.

The Development and Analysis of a Test for Assessment of Physics Inquiry Experiment. (물리 탐구 실험의 평가를 위한 도구의 개발과 분석)

  • Kim, Mi-Kyung;Oh, Hee-Gyun;Park, Jong-Won
    • Journal of The Korean Association For Science Education
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    • v.16 no.1
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    • pp.51-60
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    • 1996
  • The purpose of this study is to develope and analyze a test for the assessment of physics inquiry experiment. To do this, three experiments about 'analysis of motion', 'the relation of force and acceleration', and 'free fall motion' in high school physics textbooks were chosen, and 5 scientific inquiry domains and 16 science process skills have been specified. For each experiments, test sheet of $29{\sim}44$ questions for assessing students' ability about physics inquiry experiment were developed on the basis of the scientific inquiry processes developed earlier. After instruction about 3 experiments mentioned above, a test was administered to the students who took experiment. After the adminstration of a test, the ratio of correct answers, discrimination index, and reliability were analyzed. Using the ratio of correct answers, we can determine item difficulty. Through the D.I(discrimination index), we can find which items can discriminate the students who took experiment well from those who took experiment badly, and we can also find the stability of a test result by the reliability analysis. The test developed in this study were also administered to the students who did not take experiments, and the results were compared with the those of the students who took experiments. With the comparison by chi-square method, we could find which items can discriminate the students who took experiments from those who did not take experiments.

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Liquid Chromatography-Mass Spectrometry-Based Chemotaxonomic Classification of Aspergillus spp. and Evaluation of the Biological Activity of Its Unique Metabolite, Neosartorin

  • Lee, Mee Youn;Park, Hye Min;Son, Gun Hee;Lee, Choong Hwan
    • Journal of Microbiology and Biotechnology
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    • v.23 no.7
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    • pp.932-941
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    • 2013
  • This work aimed to classify Aspergillus (8 species, 28 strains) by using a secondary metabolite profile-based chemotaxonomic classification technique. Secondary metabolites were analyzed by liquid chromatography ion-trap mass spectrometry (LC-IT-MS) and multivariate statistical analysis. Most strains were generally well separated from each section. A. lentulus was discriminated from the other seven species (A. fumigatus, A. fennelliae, A. niger, A. kawachii, A. flavus, A. oryzae, and A. sojae) with partial least-squares discriminate analysis (PLS-DA) with five discriminate metabolites, including 4,6-dihydroxymellein, fumigatin, 5,8-dihydroxy-9-octadecenoic acid, cyclopiazonic acid, and neosartorin. Among them, neosartorin was identified as an A. lentulus-specific compound that showed anticancer activity, as well as antibacterial effects on Staphylococcus epidermidis. This study showed that metabolite-based chemotaxonomic classification is an effective tool for the classification of Aspergillus spp. with species-specific activity.

A Study on the Fault Detection and Discrimination of Transmission Line using Fault-generated High Frequency Signals (고주파를 이용한 송전선로의 사고 검출 및 판별에 관한 연구)

  • Lee, Dong-Jun;Kim, Chul-Hwan;Kim, Il-Dong
    • The Transactions of the Korean Institute of Electrical Engineers A
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    • v.48 no.8
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    • pp.924-931
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    • 1999
  • Most conventional protection relays are based on processing information in the spectrum that is close to or at power frequency. It is, however, widely known that faults on transmission lines produce frequency components of a wide range. High frequency signals caused by sudden changes in system voltage that occurs in the immediate post-fault period are generally outside the bandwidth of receptibility of most protection scheme. In this respect, a specially designed stack tuner is connected to the coupling capacitor of CVT, in order to capture the high frequency signals. Digital signal processing is then applied to the captured information to determine whether the fault is inside or outside the protected zone, and to discriminate the fault type. In this paper, modal transform is not applied to fault generated signals, because signals which are converted by modal transform are not have an information of each phase any longer. Instead, using peak voltage value of data windows is able to discriminate fault type. The paper concludes by presenting fault detection and discrimination of various faults on transmission line which are based on extensive simulation studies carried out on a typical 154kV Korean transmission line, using the EMTP software.

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Inhibitors Targeting ABA Biosynthesis and Catabolism Can Be Used to Accurately Discriminate between Haploid and Diploid Maize Kernels during Germination

  • Kwak, Jun Soo;Kim, Sung-Il;Song, Jong Tae;Ryu, Si Wan;Seo, Hak Soo
    • Plant Breeding and Biotechnology
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    • v.5 no.3
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    • pp.204-212
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    • 2017
  • There is a growing preference for using doubled haploids (DHs) in maize breeding programs because they reduce the time required to generate and evaluate new lines to 2 years or less. However, there is an urgent need for efficient techniques that accurately discriminate between haploid and diploid maize kernels. Here, we investigate the effects of several hormones and chemicals on the germination of haploid and diploid maize kernels, including auxin, cytokinin, ethylene, abscisic acid (ABA) biosynthesis inhibitor (fluridone), ABA catabolism inhibitor (diniconazole), methyl jasmonate (MeJA), and NaCl. Ethylene effectively stimulated the germination of both haploid and diploid maize kernels. The ABA biosynthesis inhibitor fluridone, the ABA catabolism inhibitor diniconazole, and MeJA selectively stimulated the germination of haploid maize kernels. By contrast, gibberellin, 1-naphthaleneacetic acid (NAA), kinetin, and NaCl inhibited the germination of both haploid and diploid maize kernels. These results indicate that the germination of haploid maize kernels is selectively stimulated by fluridone and diniconazole, and suggest that ABA-mediated germination of haploid maize kernels differs from that of diploid maize kernels and other plant seeds.