• Journal of Photoscience
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• 제9권2호
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• pp.296-298
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• 2002

Irreversible photobleaching of bacteriorhodopsin (bR), namely denaturation induced by illumination of visible light, was investigated by absorption kinetic measurements. The denaturation kinetics revealed that light illumination significantly enhanced the structural decay of bR. The kinetic analyses showed that the molecular structure of bR denatures according to a single-exponential decay, whereas irreversible photobleaching has two decay components. The decay constant of the slow component of photobleaching is almost same as that in the dark. An Arrhenius plot of the denaturation kinetic constants for the fast and slow components showed similar activation energies of approximately 19 kcal/mol.

• BMB Reports
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• 제36권4호
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• pp.367-372
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• 2003

The stability of four hemoglobins (Hb) in dimer forms (low concentration) were investigated by the kinetics of denaturation. The rate constants of denaturation were obtained by variation of 280 nm absorption versus time in 10 mM Tris-HCl, 10 mM EDTA, pH 8.0 at $45^{\circ}C$ in the absence and presence of 0.5 M ethanol, dimethyl sulfoxide (DMSO), formamide, and glycerol. The results show the trend of rate constants in different co-solvents in the following order: chicken hemolysate < human hemolysate and chicken Hb D < chicken Hb A. The buried surface area was calculated for Hb samples in the absence of cosolvents. Accordingly, the trend points out that: chicken Hb D > chicken Hb A > human Hb A. These results suggest that both chicken hemolysate and chicken Hb D are relatively more stable than human and chicken Hb A, respectively. However, the denaturation rate constants of Hb in different co-solvents have designated the following order: ethanol > DMSO > formamide > glycerol. As a matter of fact, this phenomenon is an indication of an increase in the denaturation capacity (DC) and hydrophobicity, and a decrease in the surface tension of the solution in the preceding co-solvents.

• Journal of Photoscience
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• 제9권2호
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• pp.293-295
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• 2002

The structural stability of bacteriorhodopsin (bR) solubilized by Triton X-100 (TX-100) was studied by measuring the denaturation kinetics in the dark and under illumination, and compared with the structural stability of bR solubilized by octyl-${\beta}$-glucoside (OG). In the dark, bR solubilized by TX- 100 was more stable than bR solubilized by OG. Under illumination, bR solubilized by TX-100 showed light-induced denaturation in the same manner as bR solubilized by OG. These results in the dark well correlated with the experimental results of the visible CD band. Although solubilized bR in the TX-100 concentration range of 2-50 mM showed almost identical positive CD band and did not denature in the dark at 35$^{\circ}$C, the kinetic constant of the photobleaching increased with the increase of TX-100 concentration. These results suggested that photo-intermediates of solubilized bR are destabilized by TX-100 micelles.

• Journal of Photoscience
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• 제9권2호
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• pp.118-121
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• 2002

A state of bacteriorhodopsin at high temperature was studied by various spectral measurements. The stability measurements indicated that the onset temperature of the denaturation was 70$^{\circ}C$ in the dark and 60$^{\circ}C$ under illumination. The reactivity of hydroxylamine with the Schiff's base also significantly increased in the temperature range between 60 and 70$^{\circ}C$. A spectral band at about 470 nm appeared in the temperature range higher than 60$^{\circ}C$. The circular dichroism spectra in the visible region started to change from a bilobed exiton type to a positive band at about 60$^{\circ}C$, suggesting that the two-dimensional configuration of bacteriorhodopsin molecules changed from crystalline to amorphous. All the measurements suggested a new state between 60 and 70$^{\circ}C$ in which bacteriorhodopsin is stable only in the dark.

• Journal of Plant Biology
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• 제39권1호
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• pp.57-61
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• 1996

Thermal denaturation, reassociation kinectics 및 핵부피 측정 방법으로 고추 게놈의 염기 조성, kinetic component 및 게놈 크기를 조사하였다. 변성온도(Tm)에 근거한 고추 게놈의 염기 조성은 37% (G＋C)였으며, Cot 커브에 근거한 고추 게놈은 카피수가 10,754, 178 및 1이고 kinetic complexity가 $5.6{\times}10^{3}\;bp,\;1.9{\times}10^{6}\;bp\;및\;1.9{\times}10^{8}\;bp$인 3개의 성분이 게놈의 4.2%, 26% 및 65%를 차지하고 있었다. 이로부터 계산한 고추 게놈의 크기는 $1.25{\times}10^{9}\;bp/C$인데, 이는 핵부피($62.4\;\mu\textrm{m}^3/C$)로부터 계산한 $4.053{\times}10^{9}\;bp/C$의 약 33%에 해당한다.

• 대한약리학회지
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• 제32권3호
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• pp.433-444
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• 1996

본 연구에서는 열충격에 의한 세포내 단백질 변성을 정량하는 방법을 소개하고 있다. Thiol compound인 diamide [azodicarboxylic acid bis (dimethylamide)]는 단백질변성시 노출된 sulfyhydryl기를 cross-link 시킨다. 정상 상태에서는 노출되지 않는 sulfyhydryl group이 변성된 단백질에서는 노출되기 때문에 diamide에 의한 cross-linking이 선택적으로 일어날 것이다. 그러므로 diamide는 변성된 단백질을 "trap"하는 작용을 할 수 있다. 본 연구진은 세포내 열충격후 고분자 단백질 응집물 (high molecular weight protein aggregate, HAA)이 나타남을 비환원 (non reducing) SDS-PAGE에서 관찰하였고 이를 gas flow counter로 scanning하여 정량하였다. 실험 결과 세포에 열충격을 가한후 diamide를 처리하면 HMA가 열충격 용량의존적으로 증가함을 관찰하였다. 이는 HMA의 양을 측정함으로써 열충격에 의하여 변성된 단백질을 정량할 수 있음을 반증한다. 열내성이 유도된 세포와 그렇지 않은 세포를 비교하였을 때 열내성이 유도된 세포에서는 열충격에 의한 HMA의 형성이 억제됨을 관찰하였다. 열충격후 정상온도에서 회복기를 주면서 시간대별로 diamide를 첨가하고 이때 형성된 HMA양을 측정하여, 단백질 원형복구의 역동성을 실험하였다. 그 결과, HMA는 열내성의 유도 여부와 상관없이 빠르게 없어짐을 알 수 있었다. 그러나 열내성이 유도된 세포에서 HSP70 단항체를 electroporation에 의하여 투여하였을 때 HMA가 현저히 증가하였고, 이는 열내성이 유도된 세포에서는 HSP70의 증가에 의하여 HMA생성이 억제되었음을 나타낸다. HSP70 항체를 이용하여 면역침전을 시행한 결과 변성된 세포내 단백질이 HSP70과 같이 침전됨이 관찰되었다. 이 결과는 HSP70 단백질이 변성된 단백질과 일시적으로 결합하여 정상 상태로 돌아가거나 복구될 수 있도록 도와줄 수 있음을 시사한다.

• Journal of Photoscience
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• 제9권2호
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• pp.299-301
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• 2002

Recent denaturation experiments of bacteriorhodopsin (bR) in the dark and under illumination at high temperatures revealed that irreversible thermal bleaching occurs above ~ 70°C and the preceding reversible structural changes in the dark above 60°C are closely related to irreversible photobleaching observed in the same temperature range (Yokoyama et al. (2002). J Biochem. 131,785). In this study, structural properties of bacteriorhodopsin (bR) at high temperatures were extensively probed by hydroxylamine reactivity with the Schiff base in the dark and hydrogen-deuterium (H-D) exchange in the peptide groups. In the Arrhenius plot from kinetics measurements of the hydroxylamine reaction, a good linear relationship between the reaction time constant and the inverse of the absolute temperature was observed below 60°C, while significant increase started above 60°C, suggesting that remarkable increase in water accessibility of the Schiff base in the temperature region. FT-IR spectroscopic studies on the H-D exchange suggested increase in the deuterium exchanges rate of the peptide hydrogen in the same temperature region.

• Food Science and Biotechnology
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• 제18권3호
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• pp.661-666
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• 2009

The heat tolerance and the inactivation kinetics of peroxidase (POD) and polyphenol oxidase (PPO) in pineapples (Ananas comosus) were studied in the temperature range $45-95^{\circ}C$. The kinetic parameters, such as deactivation rate constant (k), activation energy ($E_a$), and decimal reduction rate (D) of the thermal inactivation process, were determined. POD in pineapples showed biphasic inactivation behavior at temperatures range $45-75^{\circ}C$ but was monophasic at $85-95^{\circ}C$. This indicate that POD has 2 isozymes, namely heat labile and heat resistant, with $E_a$ of 68.79 and 93.23 kJ/mol, respectively. On the other hand, the heat denaturation of pineapple PPO could be described as simple monophasic first-order behavior with $E_a$ of 80.15 kJ/mol. Thus, the results of this study is useful in blanching technology where it shows a shortened time with higher temperature can be applied. The determination of the heat tolerance and inactivation POD and PPO, at different temperature range as done in the present work, was very important to improve the blanching process. This also will help to optimize the pineapple canning process which is one of the most important food industries in many tropical regions.

• Applied Biological Chemistry
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• 제38권2호
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• pp.118-122
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• 1995

Escherichia coli의 오르니틴 트란스카바밀라제는 오르니틴과 카바밀인산으로부터 시트룰린의 합성을 촉진시키는 효소이다. 이 효소의 기능과 구조와의 상관관계, 반응메카니즘 등 생화학적 연구를 하기 위하여 대량의 효소를 추출할 필요가 있다. 본 연구는 오르니틴 트란스카바밀라제의 대량생산 시스템을 확립하기 위하여 E. coli argI 유전자를 E. coli $DH5{\alpha}$ 세포의 염색체 DNA를 추출한 후에 PCR 방법으로 증폭시켜 얻었다. 증폭된 argI 유전자를 단핵생물 단백질 발현벡터인 pKK223-3에 접합시킨 후, 오르니틴 트란스카바밀라제가 존재하지 않은 E. coli TB2 세포에 클로닝 시켰다. 이 세포로부터 생산된 오르니틴 트란스카바밀라제는 암모늄염에 의한 분할, 열변성, 크로마토그래피 등을 사용하여 순수하게 분리하였다. SDS 단백질 전기영동 결과 약 38 kDa 크기의 효소가 순수하게 얻어졌다. 반응속도론적 실험결과 $K_{cat}$은 $1{\times}10^5m^{-1}$, $K_M$은 오르니틴에 대하여는 0.35 mM, 카바밀인산에 관하여는 0.06 mM이 각각 얻어졌다. 이 결과는 야생형 오르니틴 트란스카바밀라제의 반응속도 인자들과 비슷한 값이다. 본 연구는 이들 결과로부터 오르니틴 트란스카바밀라제의 기능을 하는 E. coli argI 유전자가 클로닝 되었음을 확인하였다.

• 한국미생물생명공학회:학술대회논문집
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• 한국미생물생명공학회 2005년도 2005 Annual Meeting & International Symposium
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• pp.154-164
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• 2005

Saccharomyces cerevisiae KNU5377 is a thermotolerant strain, which can ferment ethanol from wasted papers and starch at 40$^{\circ}C$ with the almost same rate as at 30$^{\circ}C$. This strain showed alcohol fermentation ability to convert wasted papers 200 g (w/v) to ethanol 8.4% (v/v) at 40$^{\circ}C$, meaning that 8.4% ethanol is acceptable enough to ferment in the industrial economy. As well, all kinds of starch that are using in the industry were converted into ethanol at 40$^{\circ}C$ with the almost same rate as at 30$^{\circ}C$. Hyperthermic cell killing kinetics and differential scanning calorimetry (DSC) revealed that exponentially growing cells of this yeast strain KNU5377 were more thermotolerant than those of S. cerevisiae ATCC24858 used as a control. This intrinsic thermotolernace did not result from the stability of entire cellular components but possibly from that of a particular target. Heat shock induced similar results in whole cell DSC profiles of both strains and the accumulation of trehalose in the cells of both strains, but the trehalose contents in the strain KNU5377 were 2.6 fold higher than that in the control strain. On the contrary to the trehalose level, the neutral trehalase activity in the KNU5377 cells was not changed after the heat shock. This result made a conclusion that though the trehalose may stabilize cellular components, the surplus of trehalose in KNU5377 strain was not essential for stabilization of whole cellular components. A constitutively thermotolerant yeast, S. cerevisiae KNU5377, was compared with a relatively thermosensitive control, S. cerevisiae ATCC24858, by assaying the fluidity and proton ATPase on the plasma membrane. Anisotropic values (r) of both strains were slightly increased by elevating the incubation temperatures from 25$^{\circ}C$ to 37$^{\circ}C$ when they were aerobically cultured for 12 hours in the YPD media, implying the membrane fluidity was decreased. While the temperature was elevated up to 40$^{\circ}C$, the fluidity was not changed in the KNU5377 cell, but rather increased in the control. This result implies that the plasma membrane of the KNU5377 cell can be characterized into the more stabilized state than control. Besides, heat shock decreased the fluidity in the control strain, but not in the KNU5377 strain. This means also there's a stabilization of the plasma membrane in the KNU5377 cell. Furthermore, the proton ATPase assay indicated the KNU5377 cell kept a relatively more stabilized glucose metabolism at high temperature than the control cell. Therefore, the results were concluded that the stabilization of plasma membrane and growth at high temperature for the KNU5377 cell. Genome wide transcription analysis showed that the heat shock responses were very complex and combinatory in the KNU5377 cell. Induced by the heat shock, a number of genes were related with the ubiquitin mediated proteolysis, metallothionein (prevent ROS production from copper), hsp27 (88-fold induced remarkably, preventing the protein aggregation and denaturation), oxidative stress response (to remove the hydrogen peroxide), and etc.