• Journal of Microbiology and Biotechnology
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• v.17 no.7
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• pp.1079-1082
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• 2007

Chromosome microdissection and the reverse FISH technique is one of the most useful methods for the identification of structurally abnormal chromosomes. In particular, the laser microbeam microdissection (LMM) method allows rapid isolation of a target chromosome or a specific region of chromosomes without damage of genetic materials and contamination. Isolated chromosomes were directly amplified by the degenerate oligonucleotide-primed polymerase chain reaction (DOP-PCR), and then the FISH probes labeled with spectrum green- or spectrum red-dUTP were generated by nick-translation. Whole chromosome painting (WCP) probes were successfully generated from only 5 copies of the chromosome. With this method, we produced 24 WCP probes for each human chromosome. We also tried to characterize a marker chromosome, which seemed to be originated from chromosome 11 on conventional banding technique. The marker chromosomes were isolated by the LMM method and analyzed by reverse FISH. We elucidated that the marker chromosome was originated from the short arm of chromosome 5 ($5p11{\to}pter$). A fully automated and computer-controlled LMM method is a very simple laboratory procedure, and enables rapid and precise characterization of various chromosome abnormalities.

• Proceedings of the Plant Resources Society of Korea Conference
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• 2018.10a
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• pp.64-64
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• 2018

The genus Cenchrus (Poaceae), containing ca. 97 species, is distributed throughout Australia, Africa and Indian sub-continent and which was introduced to the United States and Mexico for use in improved pasture. In Korea, especially Daecheong Island, it is one of the most hazardous invasive plant, which causes serious environmental threats, biodiversity damages and physically negative impact on humans and animals. It can cause serious damage to farms, fields and white sand beaches. However, the chloroplast (cp) genome sequences and information of Cenchrus longispinus have been not addressed, so we provide the complete cp genome of Cenchrus longispinus using next-generation sequencing technology. The size of cp genomes of this Daecheong Island species (Cenchrus longispinus) is 137,144 bp, and it shows a typical quadripartite structure. Consisting of the large single copy (LSC; 80,223 bp), small single copy (SSC; 12,449 bp), separated by a pair of inverted repeats (IRs; 22,236 bp). This cp genome contains 75 unique genes, 4 rRNA coding genes, 33 tRNA coding genes and 21 duplicated in the IR regions, with the gene content and organization are similar to other Poaceae cp genomes. Our comparative analysis identified four cpDNA regions (rpl16, rbcL, ndhH and ndhF) from three Cenchrus species, two Setaria species and one Pennisetum species which may be useful for molecular identification.

• Molecular & Cellular Toxicology
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• v.5 no.2
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• pp.99-107
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• 2009

Naphthalene is bicyclic aromatic compound that is widely used in various domestic and commercial applications including lavatory scent disks, soil fumigants and moth balls. Exposure to naphthalene results in the development of bronchiolar damage, cataracts and hemolytic anemia in humans and laboratory animals. However, little information is available regarding the mechanism of naphthalene toxicity. We investigated gene expression profiles and potential signature genes in human hepatocellular carcinoma HepG2 cells and human promyelocytic leukemia HL-60 cells after 3 h and 48 h incubation with the IC$_{20}$ and IC$_{50}$ of naphthalene by using 44 k agilent whole human genome oligomicroarray and operon human whole 35 k oligomicroarray, respectively. We identified 616 up-regulated genes and 2,088 down-regulated genes changed by more than 2-fold by naphthalene in HepG2 cells. And in HL-60, we identified 138 up-regulated genes and 182 down-regulated genes changed by more than 2-fold. This study identified several interesting targets and functions in relation to naphthalene-induced toxicity through a gene ontology analysis method. Apoptosis and cell cycle related genes are more commonly expressed than other functional genes in both cell lines. In summary, the use of in vitro models with global expression profiling emerges as a relevant approach toward the identification of biomarkers associated with toxicity after exposure to a variety of environmental toxicants.

• Proceedings of the Korean Society for Noise and Vibration Engineering Conference
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• 2008.04a
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• pp.647-652
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• 2008

This paper focused on the application of finite element model updating technique to evaluate the structural properties of the reinforced concrete specimen using the data collected from shaking table tests. The specimen was subjected to six El Centro(NS, 1942) ground motion histories with different Peak Ground Acceleration(PGA) ranging from 0.06g to 0.50g. For model updating, flexural stiffness values of structural members(walls and slabs) were chosen as the updating parameters so that the converged results have direct physical interpretations. Initial values for finite element model were determined from the member dimensions and material properties. Frequency response functions(i.e. transfer functions), natural frequencies and mode shapes were obtained using the acceleration measurement at each floor and given ground acceleration history. The weighting factors were used to account for the relative confidence in different types of inputs for updating(i.e. transfer function and natural frequencies). The constraints based on upper/lower bound of parameters and sensitivity-based constraints were implemented to the updating procedure in this study using standard bounded variable least-squares(BVLS) method. The veracity of the updated finite element model was investigated by comparing the predicted and measured responses. The results indicated that the updated model replicates the dynamic behavior of the specimens reasonably well. At each stage of shaking, severity of damage that results from cracking of the reinforced concrete member was quantified from the updated parameters(i.e. flexural stiffness values).

• Korean Journal of Agricultural Science
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• v.15 no.2
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• pp.138-142
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• 1988

Fifty-eight root rot samples were collected from 30 main markets and radish-growing areas in Korea from which 34 isolates of pathogenic bacteria were obtained to identified causal bacteria of the disease. According to their bacteriological characteristics and pathogenicity, the majority of rot bacteria were identified as Erwinia carotovora subsp. carotovora and Pseudomonas marginalis pv. marginalis. Among these species, E. carotovora subsp. carotovora was found to cause serious damage to radish production throughout Korea. P. marginalis pv. marginalis is the first description of bacteria which cause the diseases in radish in Korea.

• Korean Journal of Agricultural Science
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• v.15 no.2
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• pp.132-137
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• 1988

Twenty-six cabbage rot samples were collected from markets and main cabbage-growing areas in Korea and isolates of pathogenic bacteria were obtained from the collection. According to their bacteriological characteristics and pathogenicity, the majority of rot bacteria were identified as Erwinia carotovora subsp. carotovora. Pseudomollas cichorii. P. viridiflava and Xanthomonas campestris pv. campestri. Among these four species, E. carotovora subsp. carotovora and X. campestris pv. campestris were found to cause serious damage to cabbage production throughout Korea. Two species of the causal bacteria were sometimes isolates from a single cabbage rot sample and it suggest that the mixed infection of the two bacteria be occurred under field condition.

• Transactions of the Korean Society for Noise and Vibration Engineering
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• v.18 no.7
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• pp.725-731
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• 2008

This paper focused on the application of finite element model updating technique to evaluate the structural properties of the reinforced concrete specimen using the data collected from shaking table tests. The specimen was subjected to six El Centre (NS, 1942) ground motion histories with different peak ground acceleration (PGA) ranging from 0.06 g to 0.50 g. For model updating, flexural stiffness values of structural members (walls and slabs) were chosen as the updating parameters so that the converged results have direct physical interpretations. Initial values for finite element model were determined from the member dimensions and material properties. Frequency response functions (i.e. transfer functions), natural frequencies and mode shapes were obtained using the acceleration measurement at each floor and given ground acceleration history. The weighting factors were used to account for the relative confidence in different types of Inputs for updating (j.e. transfer function and natural frequencies) The constraints based on upper/lower bound of parameters and sensitivity-based constraints were implemented to the updating procedure in this study using standard bounded variable least-squares(BVLS) method. The veracity of the updated finite element model was investigated by comparing the predicted and measured responses. The results indicated that the updated model replicates the dynamic behavior of the specimens reasonably well. At each stage of shaking, severity of damage that results from cracking of the reinforced concrete member was quantified from the updated parameters (i.e. flexural stiffness values).

• Mass Spectrometry Letters
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• v.4 no.4
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• pp.59-66
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• 2013

A metabolomics study was conducted to identify urinary biomarkers for breast cancer, using gas chromatography-mass spectrometry (GC-MS) and liquid chromatography-mass spectrometry (LC-MS), analyzed by principal components analysis (PCA) as well as a partial least squares-discriminant analysis (PLS-DA) for a metabolic pattern analysis. To find potential biomarkers, urine samples were collected from before- and after-mastectomy of breast cancer patients and healthy controls. Androgens, corticoids, estrogens, nucleosides, and polyols were quantitatively measured and urinary metabolic profiles were constructed through PCA and PLS-DA. The possible biomarkers were discriminated from quantified targeted metabolites with a metabolic pattern analysis and subsequent screening. We identified two biomarkers for breast cancer in urine, ${\beta}$-cortol and 5-methyl-2-deoxycytidine, which were categorized at significant levels in a student t-test (p-value < 0.05). The concentrations of these metabolites in breast cancer patients significantly increased relative to those of controls and patients after mastectomy. Biomarkers identified in this study were highly related to metabolites causing oxidative DNA damage in the endogenous metabolism. These biomarkers are not only useful for diagnostics and patient stratification but can be mapped on a biochemical chart to identify the corresponding enzyme for target identification via metabolomics.

• Journal of the Korean Society of Safety
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• v.32 no.2
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• pp.117-123
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• 2017

This study was intended to find methods of fire extinguishing system designs that can improve the equipment's usability. In this study, the fire suppression experiment through fire extinguishers and the data drawn through the experiment were analyzed, and then the guideline for the improvement of designs was presented. The procedure is as follows. A fire suppression experiment with the use of fire extinguishers was done by 43 average adults. The whole process of the fire suppression was videotaped, and then captured major scenes were analyzed with the use of RULA, a human engineering measurement tool. The analyzed data were divided into 4 steps, and then the guideline for design improvement was presented. The summary of the study is as follows. Step 1, Fire extinguisher distance step. To reduce overload occurring at the process of holding fire extinguishers suddenly, wheels are attached to the body of extinguishers, or pedestals are installed. Step 2, Fire extinguisher transportation step. The length of hose is extended, or fire fighting water is sprayed far, so that overload of legs occurring at the process of travel can be reduced. In addition, the weight of fire extinguisher shouldn't be over 2 kg. Step 3, Safety pin removal stage. Safety pins should be applied with button type, so that excessive posture of lower limbs and excessive twisting of wrists won't happen during safety pin removal process. Besides, safety pins should be designed for easy identification and operation. Step 4, Fire extinguishing agent spraying step. To reduce overload occurring at sudden spraying of fire fighting water, pressure should be increased gradually until high pressure. With the above study results applied to existing fire extinguisher design, it may contribute to reducing any fire damage.

• Journal of the Korean Society of Radiology
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• v.12 no.2
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• pp.253-260
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• 2018

Diffusion tensor images were obtained to investigate the damage of brain white matter in non-smokers and an adequate drinking group (less than 10 points) selected by scores of the Korean versions of alcohol use disorders identification test questionnaire. Factional anisotropy (FA) values, according to the variables of age and body mass index (BMI), were not statistically significant in all regions of the brain white matter after measurement of factional anisotropy (FA) values by the tract-based spatial statics (TBSS) method. In other words, age and body mass index (BMI) do not significantly affect the microstructural changes of the brain white matter.