• Title/Summary/Keyword: cytochrome c oxidase subunit I (COI)

Search Result 116, Processing Time 0.029 seconds

Four New Records of Monogonont Rotifers (Rotifera: Monogononta) from Korea

  • Yang, Hee-Min;Min, Gi-Sik
    • Animal Systematics, Evolution and Diversity
    • /
    • v.38 no.2
    • /
    • pp.51-58
    • /
    • 2022
  • Four monogonont rotifers, Filinia hofmanni Koste, 1980, Lecane pusilla Harring, 1914, Mikrocodides chlaena (Gosse, 1886), and Proales fallaciosa Wulfert, 1937, were newly recorded in Korea. The genera Mikrocodides Bergendal, 1892 and Proales Gosse, 1886 were recorded for the first time in Korea. Mikrocodides chlaena and Proales fallaciosa were found from soil samples and are both soft-bodied species. Filinia hofmanni has previously been recorded mainly in Europe, and this is its first record in Asia. Lecane pusilla is the 24th lecanid rotifer recorded in Korea, and its morphological characteristics are consistent with previous research of L. pusilla. We have provided the morphological diagnoses of the four Korean specimens in this study, along with the partial sequences of mitochondrial cytochrome c oxidase subunit I(COI) gene of three species.

First Record of Two Pseudopolydora (Annelida: Spionidae) Species in Korea

  • Lee, Geon Hyeok;Yoon, Seong Myeong;Min, Gi-Sik
    • Animal Systematics, Evolution and Diversity
    • /
    • v.38 no.1
    • /
    • pp.26-33
    • /
    • 2022
  • Two Pseudopolydora polychaetes, P. bassarginensis and P. reticulata, originally described from Peter the Great Bay in Russia and Taiwan, respectively, were recorded firstly in Korea with DNA information. Two species are known to have distinct morphological characteristics that are separated from other Pseudopolydora species. They are characterized by reticulate pigmentations on the dorsal sides of the anterior chaetigers, a longitudinal black band-like pigmentation on the caruncle, and black paired spots on the ventral sides of the anterior chaetigers. These two species can be distinguished morphologically from each other by the length of the caruncle. Methyl green staining pattern of the species is a good method for delimiting Pseudopolydora species. The partial sequences of the mitochondrial cytochrome c oxidase subunit I (COI), 16S ribosomal DNA (16S rDNA), and the nuclear 18S ribosomal DNA (18S rDNA) from Korean specimens of the two species were determined. The morphological descriptions and images of the two Pseudopolydora species are provided.

First Record of the Family Polygordiidae (Annelida: Polychaeta) in Korean Fauna

  • Jiseon Park;Taeseo Park;Jongwoo Jung
    • Animal Systematics, Evolution and Diversity
    • /
    • v.39 no.4
    • /
    • pp.309-313
    • /
    • 2023
  • Polygordiidae is recorded as a new record in the Korean fauna. Twenty-three specimens of Polygordius pacificus were collected from the low intertidal zone with coarse sandy bottom on the eastern coasts of Korea. Morphologically, there was no doubt that the specimens are close to the holotype of P. pacificus, particularly due to the presence of elongated and longitudinal pygidial glands, and the length to width ratio. The prostomium of the Korean specimens have a rounded shape that is similar to subsequent research using scanning electron microscope. The DNA sequence comparison of the mitochondrial cytochrome c oxidase subunit I (COI) between Korean and Japanese population supports the identification of present specimens.

Morphological and molecular evidence for the recognition of Hypoglossum sabahense sp. nov. (Delesseriaceae, Rhodophyta) from Sabah, Malaysia

  • Wynne, Michael J.;Kamiya, Mitsunobu;West, John A.;Goer, Susan Loiseaux-de;Lim, Phaik-Eem;Sade, Ahemad;Russell, Hannah;Kupper, Frithjof C.
    • ALGAE
    • /
    • v.35 no.2
    • /
    • pp.157-165
    • /
    • 2020
  • Culture isolates of the genus Hypoglossum (Delesseriaceae, Rhodophyta) were obtained and their development and morphological structure over many years were followed in the laboratory. Molecular data (rbcL, large subunit ribosomal DNA, and cytochrome c oxidase subunit I) were obtained from these strains and evidence presented to recognize the new species: Hypoglossum sabahense from Sabah, Malaysia. Because various aspects of morphology in culture specimens differ significantly from types based on field specimens we have to rely mainly on the molecular criteria in ascribing a new taxonomic name here. This also is complicated by the major lack of molecular phylogenetic evidence for Hypoglossum and other Delesseriaceae. The 'Germling Emergence Method' and 'serendipity' are proving valuable in discovering significant new taxa from laboratory cultures which otherwise might never be known.

First Morphological Description of a Larval Sleek Unicornfish Naso hexacanthus(Acanthuridae, Perciformes) Identified by COI Barcoding in the East China Sea (COI 바코딩으로 동정한 남방표문쥐치(Naso hexacanthus) 치어의 첫 형태 기재)

  • Choi, Hae-young;Choi, Hee-chan;Kim, Sung;Oh, Hyun-ju;Youn, Seok-hyun
    • Korean Journal of Ichthyology
    • /
    • v.34 no.2
    • /
    • pp.119-126
    • /
    • 2022
  • Here, we present the first morphological description of a larval Naso hexacanthus (5.2 mm in body length) from the East China Sea identified by cytochrome c oxidase subunit I (COI) barcoding. The larva had a kite-shaped body with long serrated first spine of dorsal and anal fins. There were four melanophores on the base of the anal fin, dense melanophores on the caudal peduncle, and scattered melanophores on the surface of the brain. There was one small spine on the snout and behind each eye, with serrations on the head, top of the eye, inner- and outer-preopercle, and on the lower part and side of the opercle. The morphological characteristics of larval N. hexacanthus identified by COI barcoding will be useful for species identification of larval fish.

Nannophya koreana sp. nov.(Odonata: Libellulidae): A new dragonfly species previously recognized in Korea as the endangered pygmy dragonfly Nannophya pygmaea Rambur

  • Bae, Yeon Jae;Yum, Jin Hwa;Kim, Dong Gun;Suh, Kyong In;Kang, Ji Hyoun
    • Journal of Species Research
    • /
    • v.9 no.1
    • /
    • pp.1-10
    • /
    • 2020
  • A new dragonfly species, Nannophya koreana sp. nov., is described from Korea on the basis of morphology and mitochondrial cytochrome oxidase c subunit I (COI) gene sequences. Nannophya materials from Korea and other areas in Southeast Asia were compared. The new species was previously recognized in Korea as the endangered pygmy dragonfly Nannophya pygmaea Rambur, 1842, which is widely distributed in insular and peninsular Southeast Asia. However, male adults of the Nannophya population in Korea could be distinguished from other N. pygmaea populations by the presence of a thick, incomplete black stripe on the lateral synthorax that terminated at half-length (vs. continuous to wing base), light orange (vs. red) anal appendages, and 4-5 (vs. 2-3) black teeth on the ventral superior appendages. In addition, the body length of N. koreana was generally larger (1.2-1.4 times) than that of N. pygmaea, regardless of life stage. COI gene sequences from the two groups exhibited substantial genetic differences (>12%), thereby sufficiently substantiating their differentiation. The taxonomic status, distribution, and habitat of the new species are discussed.

The First Report of Two Feather Mites (Acariformes: Astigmata) from the Eastern Spot-billed Duck, Anas zonorhyncha (Anseriformes: Anatidae), in Korea

  • Yeong-Deok Han;Sergey V. Mironov;Gi-Sik Min
    • Animal Systematics, Evolution and Diversity
    • /
    • v.39 no.4
    • /
    • pp.254-263
    • /
    • 2023
  • Two feather mites, Brephosceles anatina Dubinin, 1951 (Analgoidea: Alloptidae) and Freyana anatina (Koch, 1844) (Pterolichoidea: Freyanidae), have been reported for the first time from the Eastern Spot-billed Duck, Anas zonorhyncha Swinhoe, 1866 (Anseriformes: Anatidae), in Korea. The genera Brephosceles Hull, 1934 and Freyana Haller, 1877 are new records of Korean fauna. The morphology of B. anatina is distinguished from three species of the lambda species group in having legs IV extending the level of setae e2 with the distal end of the tarsus in males, and the incision on the posterior margin of the hysteronotal shield triangular-shaped and distinctly longer than its greatest width in females. Freyana anatina is distinguished from F. nyrocae and F. obliquasetae in having setae ps1 with a rectangle bend in homeomorphic males, and setae ps1 obliquely ovate and divergent, with the inner canal going obliquely across the membranous part of these setae in females. This study provides morphological redescriptions of both feather mite species supplemented with partial sequences of mitochondrial cytochrome c oxidase subunit I(COI), based on specimens collected in Korea.

Infection by a Filarial Nematode from the Family Onchocercidae in the Wild Bird Anas falcata

  • Kim, Young Ji;Jang, Jin Ho;Kim, Min Chan;Park, Young-Seok;Kim, Hye Kwon
    • Proceedings of the National Institute of Ecology of the Republic of Korea
    • /
    • v.3 no.4
    • /
    • pp.221-226
    • /
    • 2022
  • A filarial nematode was found in a blood sample of an Anas falcata individual collected in South Korea in 2018. Phylogenetic analysis based on partial cytochrome C oxidase subunit I (COI) sequences placed the nematode as a novel genus of the family Onchocercidae and as closely related to Mansonella species, Chandlerella quiscali, and filarial nematodes recently reported in avian species. However, different phylogenetic relationship was observed in the NADH dehydrogenase subunit 5 and 12S rRNA-based phylogenetic trees, which might indicate the filarial nematode found in this study was not defined to belong to the known specific genera of the family Onchocercidae. The screening of 105 additional avian blood samples retrieved only one 12S rRNA-targeting polymerase chain reaction (PCR)-positive sample, which indicates that filarial nematode infection is rare in wild birds or that it occurs below the detection limit of PCR in blood samples. Nevertheless, considering the recent findings about ancient interactions between birds and human pathogenic filarial nematodes and their pathogenic potential in several avian species, additional exploration of novel filarial nematodes in wild birds remains necessary.

First Reliable Record of the Dusky Shark Carcharhinus obscurus (Lesueur, 1818) (Carcharhinidae, Pisces) from Korea (한국산 흉상어과(Carcharhinidae) 어류 1미기록종, Carcharhinus obscurus (Lesueur, 1818))

  • Lee, Woo Jun;Kim, Yoonji;Na, Jung-Hyun;Kim, Jin-Koo
    • Korean Journal of Fisheries and Aquatic Sciences
    • /
    • v.52 no.6
    • /
    • pp.696-701
    • /
    • 2019
  • Five specimens (839 - 1280 mm TL, Total length) of the dusky shark Carcharhinus obscurus, belonging to the family Carcharhinidae, were collected from the waters off Jejudo Island, Sinan, Namhae, Busan and Gangneung, Korea, during 2010-2019. Carcharhinus obscurus was similar to Carcharhinus brachyurus but was distinguished by the interdorsal ridge (present in C. obscurus vs. absent in C. brachyurus) and the shape of upper jaw teeth (broad in C. obscurus vs. narrow in C. brachyurus). In addition, 479 base-pair sequences in the mitochondrial DNA cytochrome c oxidase subunit I (COI) of our two specimens corresponded to those of C. obscurus (genetic distance, 0.000-0.003), but clearly distinguished from those of the Korean C. brachyurus (genetic distance, 0.03). We adopted the Korean name "Heuk-sang-eo" for Carcharhinus obscurus, after Kim and Ryu (2017).

The phylogeographic history of amphitropical Callophyllis variegata (Florideophyceae, Rhodophyta) in the Pacific Ocean

  • Bringloe, Trevor T.;Macaya, Erasmo C.;Saunders, Gary W.
    • ALGAE
    • /
    • v.34 no.2
    • /
    • pp.91-97
    • /
    • 2019
  • Chilean species of marine macroalgae with amphitropical distributions oftentimes result from introductions out of the Northern Hemisphere. This possibility was investigated using haplotype data in an amphitropical red macroalgae present in Chile, Callophyllis variegata. Published sequence records from Canada and the United States were supplemented with new collections from Chile (April 2014-November 2015). Specimens of C. variegata were amplified for the 5′ end of the cytochrome c oxidase subunit I gene (COI-5P) and the full length nuclear internal transcribed spacer region. Haplotype networks and biogeographic distributions were used to infer whether C. variegata was introduced between hemispheres, and several population parameters were estimated using IMa2 analyses. C. variegata displayed a natural amphitropical distribution, with an isolation time of approximately 938 ka between hemispheres. It is hypothesized that contemporary populations of C. variegata were established from a refugial population during the late Pleistocene, and may have crossed the tropics via rafting on buoyant species of kelp or along deep-water refugia coincident with global cooling, representing a rare case of a non-human mediated amphitropical distribution.