• Title/Summary/Keyword: community informatics

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LitCovid-AGAC: cellular and molecular level annotation data set based on COVID-19

  • Ouyang, Sizhuo;Wang, Yuxing;Zhou, Kaiyin;Xia, Jingbo
    • Genomics & Informatics
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    • v.19 no.3
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    • pp.23.1-23.7
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    • 2021
  • Currently, coronavirus disease 2019 (COVID-19) literature has been increasing dramatically, and the increased text amount make it possible to perform large scale text mining and knowledge discovery. Therefore, curation of these texts becomes a crucial issue for Bio-medical Natural Language Processing (BioNLP) community, so as to retrieve the important information about the mechanism of COVID-19. PubAnnotation is an aligned annotation system which provides an efficient platform for biological curators to upload their annotations or merge other external annotations. Inspired by the integration among multiple useful COVID-19 annotations, we merged three annotations resources to LitCovid data set, and constructed a cross-annotated corpus, LitCovid-AGAC. This corpus consists of 12 labels including Mutation, Species, Gene, Disease from PubTator, GO, CHEBI from OGER, Var, MPA, CPA, NegReg, PosReg, Reg from AGAC, upon 50,018 COVID-19 abstracts in LitCovid. Contain sufficient abundant information being possible to unveil the hidden knowledge in the pathological mechanism of COVID-19.

Implementation of Rapid Application Development Method in the Development of Geographic Information Systems of Industrial Centers

  • Sasmito, Ginanjar Wiro;Wibowo, Dega Surono;Dairoh, Dairoh
    • Journal of information and communication convergence engineering
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    • v.18 no.3
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    • pp.194-200
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    • 2020
  • Cities in Indonesia include diverse scattered industrial centers comprising industries that can sustain the existing economic pace. For industrial data collection, the city government still relies on census that consumes extensive time and money. The public are unfamiliar with industries owing to their lack of industry information; therefore, the market share is not optimal. In addition, the opportunity to procure investors for business development is limited. A Geographic Information System (GIS) is a computer system that can record, store, write, analyze, and display geographical data. Using the Rapid Application Development (RAD) method, GIS was developed on a website platform to provide information on industry profiles, types of production, investment values, industry maps, and industrial locations in each village and sub-district to a wider community. The RAD method was chosen compared to the waterfall method because it could accelerate website development process.

Opinion: Strategy of Semi-Automatically Annotating a Full-Text Corpus of Genomics & Informatics

  • Park, Hyun-Seok
    • Genomics & Informatics
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    • v.16 no.4
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    • pp.40.1-40.3
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    • 2018
  • There is a communal need for an annotated corpus consisting of the full texts of biomedical journal articles. In response to community needs, a prototype version of the full-text corpus of Genomics & Informatics, called GNI version 1.0, has recently been published, with 499 annotated full-text articles available as a corpus resource. However, GNI needs to be updated, as the texts were shallow-parsed and annotated with several existing parsers. I list issues associated with upgrading annotations and give an opinion on the methodology for developing the next version of the GNI corpus, based on a semi-automatic strategy for more linguistically rich corpus annotation.

Mobile Devices Technologies: Risks and Security

  • Alsaqour, Raed;Alharthi, Sultan;Aldehaimi, Khalid;Abdelhaq, Maha
    • International Journal of Computer Science & Network Security
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    • v.21 no.4
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    • pp.249-254
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    • 2021
  • Our society is depending on mobile devices that play a major role in our lives. Utilizing these devices is possible due to their speed power and efficiency in performing basic as well as sophisticated operations that can be found in traditional computers like desktop workstations. The challenge with using mobile devices is that organizations are concerned with the interference between personal and corporate use due to Bring Your Own Device (BYOD) trend. This paper highlights the importance of mobile devices in our daily tasks and the associated risks involved with using these devices. Several technologies and countermeasures are reviewed in this paper to secure the mobile devices from different attempts of attacks. It is important to mention that this paper focuses on technical measures rather than considering different aspects of security measures as recommended by the cybersecurity community.

Patterns of Childhood Cancer Incidence in Saudi Arabia (1999-2008)

  • Al-Mutlaq, Hind M.;Bawazir, Amen Ahmed;Jradi, Hoda;Al-Dhalaan, Zeyad Abdulaziz;Al-Shehri, Ali
    • Asian Pacific Journal of Cancer Prevention
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    • v.16 no.2
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    • pp.431-435
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    • 2015
  • Background: Although childhood cancer is a rare disease, 100,000 children younger than 15 years of age die from cancer each year, the majority of them in developing countries. More data need to be gathered and published particularly in developing countries to better understand the scale of the problem. Aims: This study aimed to describe the patterns of childhood cancers in Saudi Arabia over a period of ten years (1999-2008). Materials and Methods: This descriptive retrospective study was based on secondary data from the Saudi Cancer Registry from 1999 to 2008. All Saudi cases (both genders), under the age of 15 years, who were diagnosed with cancer during the study period, were included in this study. Results: Childhood cancer in Saudi Arabia, in the period between 1999 and 2008, accounted for about 8% of total cancer cases. The most common encountered cancers were leukemia (34.1%), followed by lymphoma (15.2%), brain (12.4%), and kidney cancers (5.3%). The overall incidence of childhood cancers increased from 8.8 per 100,000 in 1999 to 9.8 per 100,000 in 2008. The incidence rates of cancers per 100,000 in the years 1999 and 2008 were generally higher among males, (9.4 and 11.5 in males vs. 8.3 and 8.1 in females). The highest incidence rate in the surveyed years was apparent in the birth to age 4 years group. Conclusions: Cancer is an important public health problem in Saudi Arabia and a major ascending contributor to mortality and morbidity in children. More studies are required to describe the patterns of childhood cancers and related risk factors in Saudi Arabia.

Eigenvalue analysis of axisymmetric circular Mindlin plates by pseudospectral method

  • Lee, Jinhee
    • International Journal of Precision Engineering and Manufacturing
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    • v.3 no.3
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    • pp.44-49
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    • 2002
  • A study of free vibration of axisymmetric circular plates based on Mindlin theory using a pseudospectral method is presented. The analysis is based on Chebyshev polynomials that are widely used in the fluid mechanics research community. Clamped, simply supported and flee boundary conditions are considered, and numerical results are presented for various thickness-to-radius ratios.

Extraction of Learning Contexts and Analysis of Informatics Textbooks in Order to Teach The Computational Thinking in Middle School (계산적 사고 교육을 위한 중학교의 학습요소 추출과 정보 교과서 분석)

  • Jong, Choe Hyun
    • The Journal of Korean Association of Computer Education
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    • v.16 no.6
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    • pp.45-54
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    • 2013
  • Computational thinking has been a powerful key recently to open a new paradigm era in the curriculum of Informatics subject and the community of computer science education. But the quality and quantity of domestic research about it has been very poor in comparison with other countries. Therefore, this study focuses on the definition, learning steps and learning contexts about computational thinking education using some professional questionnaires and analyses of related other countries' literatures. The learning contexts that were extracted by several previous works could be used as the factor to analyze the curriculum of Informatics subject and textbooks in middle school; these could be helpful to teach the ability of computational thinking in middle school. Results of these questionnaires show that the three steps and 13 learning contexts of computational thinking education are properly well-formulated. The 5 of 13 learning contexts, such as data collection, are missing in 2009 revised-Informatics curriculum in middle school as well as the seven Informatics textbooks that used in middle school contained 10 of 13 learning contexts for computational thinking education.

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DYNAMIC BEHAVIOUR FOR A NONAUTONOMOUS SMOKING DYNAMICAL MODEL WITH DISTRIBUTED TIME DELAY

  • Samanta, G.P.
    • Journal of applied mathematics & informatics
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    • v.29 no.3_4
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    • pp.721-741
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    • 2011
  • In this paper we have considered a dynamical mathematical model of the sub-populations of potential smokers (non-smokers), smokers, smokers who temporarily quit smoking, smokers who permanently quit smoking and a class of smoking associated illness by introducing time dependent parameters and distributed time delay to acquire smoking habit. Here, we have established some sufficient conditions on the permanence and extinction of the smoking class in the community by using inequality analytical technique. We have introduced some new threshold values $R_0$ and $R^*$ and further obtained that the smoking class in the community will be permanent when $R_0$ > 1 and the smoking class in the community will be going to extinct when $R^*$ < 1. By Lyapunov functional method, we have also obtained some sufficient conditions for global asymptotic stability of this model. Computer simulations are carried out to explain the analytical findings. The aim of the analysis of this model is to identify the parameters of interest for further study, with a view to informing and assisting policy-maker in targeting prevention and treatment resources for maximum effectiveness.

Development of Questionnaires for Pathogenesis Analysis of Guibi-tang Symptom (귀비탕증(歸脾湯證)의 병인논적(病因論的) 분석(分析)을 위한 설문문항(說問問項) 개발(開發))

  • Lee, Byoung-Hee;Park, Young-Jae;Kim, Min-Yong;Oh, Hwan-Sup;Park, Young-Bae
    • The Journal of the Society of Korean Medicine Diagnostics
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    • v.12 no.2
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    • pp.41-48
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    • 2008
  • Background : Guibi-tang is one of the most common herbs in oriental medicine. Principally, this medicine heals illness from overstress. Therefore, it is frequently used in the ancient community. Because of insufficiency in data, objective judgements are difficult in remedial effects by Guibi-tang. In order to make objectivity diagnose data, this research is developed. Purpose : The aim of the research is to make questionnaire for the medicine and the objective is to sell to the public from the local clinic. Methods : The questionnaire which includes symptoms and signs for diagnose of Guibi-tang is studied by the Delphi method and average value. Results : By the Delphi method and average value, 22 Items of questionnaires are choosen for the research. Conclusions : Further research is necessary for modification of questionnaire by statistics and cerification by clinical trial. The statistics and verification by clinical trial is necessary with modification for further research.

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Influential Factors on the Awareness of Agile Software Development Methodology: A Systematic Literature Review

  • NurLiyanaSulaiman, NurLiyanaSulaiman;Mahrin, MohdNaz'ri;Yusoff, RasimahCheMohd
    • Journal of Internet Computing and Services
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    • v.17 no.5
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    • pp.161-172
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    • 2016
  • Agile software development methodology has been implemented by software industries over a decade ago and well accepted in the practitioner community. However, there is limited understanding on how agile practitioners aware towards implementation of agile practices in software development. Lack of awareness will lead to misunderstandings among agile practitioners and misuse the agile practices. In order to understand the awareness of agile practices, this paper aims to investigate the factors that affect awareness of agile practitioners in implementing agile practices. A systematic literature review (SLR)was conducted in order to classify and define the factors of awareness in agile software development methodology. The review was based on papers between 2002 and December 2014 from seven electronic databases. The relevant papers were included 20 journal articles, 24 conference papers,16 book chapters, 9 workshop papers. Consequently, 69 papers were identified that closely related with awareness in agile software development methodology. From the thematic analysis, 13 factors were classified from 42 elements. Based on the review result, understanding the influential factors on the awareness of agile practices will provide benefit to researchers and agile practitioners.