• Title/Summary/Keyword: cluster coefficient

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Genetic Divergence Analysis among Micromutant Lines in Finger Millet(Eleusine coracana G.)

  • Muduli, Kumuda Chandra;Misra, Rama Chandra
    • Journal of Crop Science and Biotechnology
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    • v.11 no.1
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    • pp.63-68
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    • 2008
  • The induced genetic divergence was estimated in 44 mutant lines of finger millet variety GPU 26, developed by single and combination treatments with gamma rays, EMS and NG using three multivariate analyses. The mutant lines were grouped into eight genetically diverse clusters by multivariate D2 and canonical analyses and 11 clusters by dendrogram grouping through Gower's similarity coefficient. The clustering pattern in these three methods was almost similar. Twelve mutant lines in D2 and 13 in the dendrogram grouping method were grouped in the parental cluster(Cluster I) indicating that they did not possess enough divergence from the parent to be classified as micromutant lines. However a large proportion of mutant lines showed divergence from the parent variety and also among themselves. No definite relationship of mutagenic origin and clustering of mutant lines were observed. The mutant lines developed from the same mutagenic treatments often grouped into different clusters indicating that each mutagenic treatment was effective in inducing diverse types of changes in the nine traits studied. The hybridization program between the divergent mutant lines GE 2-2 or GE 3-4 with GG 3-1 is expected to give promising and desirable segregants in subsequent generations. Traits such as days to 50% flowering and days to maturity had major contributions to the induced genetic divergence.

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Thermodynamic Properties of Kr Gas Adsorbed on Graphite Surface (흑연 표면에 흡착된 Kr 기체의 열역학적 성질)

  • Woon-Sun Ahn;Kyung Hee Ham;Eun Ah Yoo;Kwang Soon Lee
    • Journal of the Korean Chemical Society
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    • v.26 no.4
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    • pp.211-217
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    • 1982
  • Assuming krypton molecules adsorbed on the graphite surface as a two-dimensional (2D) gas, 4th virial coefficient of the virial equation is calculated by the use of cluster integrals. The Henry's law constant, and 2nd and 3rd virial coefficients are also calculated. Adsorption isotherms calculated from this virial equation agree very satisfactorily with experimental results. The interaction energy of Kr-graphite surface is calculated assuming the pairwise additivity of Lennard-Jones(12,6) potential, and parametars therein are taken as; ${\varepsilon}_{gs}$/k = 71.1 K, ${\varepsilon}_{gg}$/k = 170 K, ${\sigma}_{gs}$ = 354 pm, and ${\sigma}_{gg}$ = 368 pm.

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Evaluating the Performance of Four Selections in Genetic Algorithms-Based Multispectral Pixel Clustering

  • Kutubi, Abdullah Al Rahat;Hong, Min-Gee;Kim, Choen
    • Korean Journal of Remote Sensing
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    • v.34 no.1
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    • pp.151-166
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    • 2018
  • This paper compares the four selections of performance used in the application of genetic algorithms (GAs) to automatically optimize multispectral pixel cluster for unsupervised classification from KOMPSAT-3 data, since the selection among three main types of operators including crossover and mutation is the driving force to determine the overall operations in the clustering GAs. Experimental results demonstrate that the tournament selection obtains a better performance than the other selections, especially for both the number of generation and the convergence rate. However, it is computationally more expensive than the elitism selection with the slowest convergence rate in the comparison, which has less probability of getting optimum cluster centers than the other selections. Both the ranked-based selection and the proportional roulette wheel selection show similar performance in the average Euclidean distance using the pixel clustering, even the ranked-based is computationally much more expensive than the proportional roulette. With respect to finding global optimum, the tournament selection has higher potential to reach the global optimum prior to the ranked-based selection which spends a lot of computational time in fitness smoothing. The tournament selection-based clustering GA is used to successfully classify the KOMPSAT-3 multispectral data achieving the sufficient the matic accuracy assessment (namely, the achieved Kappa coefficient value of 0.923).

An Analysis of the Cognitive Processes of 5-Year-Old Children : A Focus on a Performance of Cognitive Assessment System Based on Gender, Monthly Age, and Tendencies towards Hyperactivity (만 5세 유아의 인지과정 특성 분석 : 성별, 월령, 과잉행동성향에 따른 CAS 수행 결과를 중심으로)

  • Park, Sae-Rom;Park, Hye-Jun
    • Korean Journal of Child Studies
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    • v.31 no.4
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    • pp.139-157
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    • 2010
  • This study investigated the cognitive process of 5-year-old children, with a particular focus on gender, monthly age, and their tendencies towards hyperactivity through the performance of the Cognitive Assessment System (CAS; Das & Naglieri, 1997). The children with tendencies towards hyperactivity were identified based on Conners Teachers' Rating Scale (CTRS). The subjects were 75 five-year-old children in Seoul and surrounding metropolitan areas. Data were analyzed by means of descriptive statistics, an independent sample t-test, Pearson's correlation coefficient, one-way ANOVA, and by K-mean cluster analysis. Our results were as follows : (1) The CAS and CTRS' sub-factors were correlated negatively, except the positive correlation between planning factor and hyperactivity factor. (2) Girls exhibited significantly higher CAS scores in planning & sequential processing than boys. (3) The upper monthly age group (68-71 months) showed significantly higher score in terms of planning than the lower monthly age group (60-63 months). (4) The CAS scores of the children with tendencies towards hyperactivity was lower than that of normal children. (5) The CAS profile of 5-year-old children was divided into 4 groups with distinctive characteristics by means of K-mean cluster analysis.

A Study on the Upper Body Shapes of Late Elementary Schoolgirls (학령후기 여아의 상반신 체형 연구)

  • Jang, Jeong-Ah
    • Fashion & Textile Research Journal
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    • v.8 no.1
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    • pp.107-112
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    • 2006
  • This study is done to classify the upper body shapes for late elementary schoolgirls. The sampling was done for 11~12 years-old-girls resident in Busan and Kyungnam. Based on the somatometric charateristics of them, 33 anthropometic and 7 photogrphic measurment data were acquired from every girl. These data are statistically analyzed with the following methods; Factor Analysis, Cluster Analysis, and Discriminant Analysis. Resulting from the factor analysis, it is shown that 79.95% of the whole variances can be explained with 8 factors. Through the cluster analysis, 3 types of upper body shapes can be categorized as follows: Type I has average horizontal size, big vertical size and lots of protruded chest ; Type III has big horizontal size, the mean vertical size, and big upper angle of the back ; Type II has small horizontal and vertical size and long surface length of the upper body. Through the discriminant analysis, the high discriminative items in discriminant function are follows: Upper chest circumference, arm length and waist front length of discriminant function I and waist depth, front length, back breadth, nipple to nipple breadth and upper chest circumference of discriminant function II have large coefficient values.

Determining Optimal Locations of an Artificial Recharge Well using an Optimization-coupled Groundwater Flow Model (지하수 모델링 기법을 이용한 인공함양정 최적 위치 평가)

  • Lee, Hyeonju;Koo, Min-Ho;Kim, Yongcheol
    • Journal of Soil and Groundwater Environment
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    • v.19 no.3
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    • pp.66-81
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    • 2014
  • A Fortran program was developed to determine the optimal locations of an artificial recharge well. Three objective functions were considered: (1) maximizing the recovery rates, (2) maximizing the injection rates, and (3) minimizing the coefficient of variation of the increased pumping rates. We also suggested a new aggregate objective function which combined the first and the third objective functions. The model results showed that locating the injection well inside the cluster of pumping wells was desirable if either the recovery or the injection rate was taken into account. However, the injection well located outside the cluster evenly increased the pumping rates in existing pumping wells. Therefore, for clustered pumping wells, installing an injection well at the center or the upstream of the pumping wells seems beneficial. For linear arrangement of pumping wells parallel to the constant head boundary, locating the injection well in the upstream was recommended. On the contrary, in case of the linear arrangement perpendicular to the constant head boundary, the injection well installed on both sides of the central part of the pumping wells was preferable.

Analysis of the Genetic Relationship among Mulberry (Morus spp.) Cultivars Using Inter-Simple Sequence Repeat (ISSR) Markers

  • Park, Eun-Ju;Kang, Min-Uk;Choi, Myoung-Seob;Sung, Gyoo-Byung;Nho, Si-Kab
    • International Journal of Industrial Entomology and Biomaterials
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    • v.41 no.2
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    • pp.56-62
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    • 2020
  • Mulberry (Morus spp. family: Moraceae) has prime importance in the sericulture industry, and its foliage is the only natural feed of the silkworm Bombyx mori L. Traditional classification methods using morphological traits were largely unsuccessful in assessing the diversity and relationships among different mulberry species because of environmental influences on the traits of interest. For these reasons, it is difficult to differentiate between the varieties and cultivars of Morus spp. In the present study, inter-simple sequence repeat (ISSR) markers were used to investigate the genetic diversity of 48 mulberry samples genotyped using nine ISSR primers. The ISSR markers exhibited polymorphisms (53.2%) among mulberry genotypes. Furthermore, similarity coefficient estimated for these ISSR markers was found to vary between 0.67 and 0.99 for the combined pooled data. The phenogram drawn using the UPGMA cluster method based on combined pooled data of the ISSR markers divided the 48 mulberry genotypes into seven major groups. No genetic association was found in the collection area, and there was a mixed pattern between the mulberry lines. The hybridization between different mulberry species is highly likely to be homogenized due to natural hybridization.

Spatial Influence on Acupoints Network Derived from the Chapter on Acupuncture & Moxibustion in "Beijiqianjinyaofang" ("비급천금요방(備急千金要方)" 침구편(鍼灸篇)으로 구성한 경혈(經穴) 네트워크에 공간적 위치 변수가 미치는 영향)

  • Kim, Min-Uk;Yang, Seung-Bum;Ahn, Seong-Hoon;Sohn, In-Chul;Kim, Jae-Hyo
    • Korean Journal of Acupuncture
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    • v.29 no.3
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    • pp.431-440
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    • 2012
  • Objectives : Recently, network science is very popular topic in various scientific fields and many studies have reported that it gives meaningful results on studying characteristics of a complex system. In this study, based on network theory, we made acupoints network using data of combined acupoints which appeared at "Beijiqianjinyaofang". We focused to find out the distinctive roles of remote and local combinations on the network. Furthermore, we aimed to identify the possibility of numerical and quantitative application to acupuncture researches. Methods : Based on examples of combined acupoints in "Beijiqianjinyaofang", the network consisted of 291 nodes and 2,431 links. The spatial distances between combined acupoints were calculated by the human dummy model. We removed the links step by step for the three cases - remote, local, and random cases, and observed the characteristic changes by calculating path lengths, similarity indices, and clustering coefficients. Also cluster analysis was carried out. Results : The network had a small number of remote links, and a large number of local links. These two links had the distinct characteristics. Whereas the local links formed a cluster of nearby nodes, remote links played a role to increase the correlation between the clusters. Conclusions : These results suggest that acupoints network increases the connectivity between the distal part and the trunk of human body, and enables various combinations of the acupoints. This finding conclusively showed that mechanism of combined acupoints could be interpreted meaningfully by applying network theory in acupuncture researches.

Comparison of the Similarity Among the Plant Communities of the Grazing Pasture by the Cluster-Analysis (군집분석을 이용한 방목초지 식물군락의 유사성 비교)

  • Park, Geun-Je;Spatz, G.
    • Journal of The Korean Society of Grassland and Forage Science
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    • v.24 no.4
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    • pp.293-300
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    • 2004
  • This study was carried out to investigate the ecological behaviour forage value and similarity among the plant communities of the grazing pasture near Witzenhausen in middle part of Germany. Sixteen plant communities of the different grazing pasture were mostly the Molinio-Arrhenatheretea and Festuco-Brometea, and those were named the class of plant sociological nomenclature. The ecological behaviour and forage value of the communities except mesobromion(half dry grassland community) were relatively good for forage production. The correlation coefficient between class No. 14 and 12 of plant communities was highest, and the similarity among the communities were greatly affected by botanical composition. The resemblance measure of the cluster-analysis by complete-linkage-method for the similarity among plant communities was better the euclidean distance than those of others. The clustering analysis showed that the communities of relatively similar botanical composition were closely grouped.

Effective Image Segmentation using a Locally Weighted Fuzzy C-Means Clustering (지역 가중치 적용 퍼지 클러스터링을 이용한 효과적인 이미지 분할)

  • Alamgir, Nyma;Kim, Jong-Myon
    • Journal of the Korea Society of Computer and Information
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    • v.17 no.12
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    • pp.83-93
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    • 2012
  • This paper proposes an image segmentation framework that modifies the objective function of Fuzzy C-Means (FCM) to improve the performance and computational efficiency of the conventional FCM-based image segmentation. The proposed image segmentation framework includes a locally weighted fuzzy c-means (LWFCM) algorithm that takes into account the influence of neighboring pixels on the center pixel by assigning weights to the neighbors. Distance between a center pixel and a neighboring pixels are calculated within a window and these are basis for determining weights to indicate the importance of the memberships as well as to improve the clustering performance. We analyzed the segmentation performance of the proposed method by utilizing four eminent cluster validity functions such as partition coefficient ($V_{pc}$), partition entropy ($V_{pe}$), Xie-Bdni function ($V_{xb}$) and Fukuyama-Sugeno function ($V_{fs}$). Experimental results show that the proposed LWFCM outperforms other FCM algorithms (FCM, modified FCM, and spatial FCM, FCM with locally weighted information, fast generation FCM) in the cluster validity functions as well as both compactness and separation.