• Title/Summary/Keyword: cluster coefficient

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Classification of Garlic Germplasms Based on Agronomic Characteristics and Multivariative Analysis (마늘 유전자원의 작물학적 특성과 다변량 분석에 의한 품종군 분류)

  • Lee, Jae Sun;Park, Young Uk;Jeong, Jae Hyun;Kwon, Young Hee;Chang, Who Bong;Lee, Hee Du
    • Korean Journal of Plant Resources
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    • v.34 no.1
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    • pp.79-88
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    • 2021
  • This research was conducted to investigate the genetic diversity and select useful accession with agronomic characteristics of garlic (Allium sativum L.). germplasms at Garlic Research Institute in Chungbuk Agricultural Research and Extension Service. Morphological diversity and relationships among 160 germplasms collected from 26 countries were assessed by methods of clustering and principal component analysis. Among 11 types of leaves and bulbs characteristics, emergence days of leaf showed the highest variation with coefficient of variation of 84.8%, and the bulb weight and the number of scales showed higher variability with 24.3%. Correlation analysis based on 11 quantitative traits showed that bulb weight and bulb length have very high positive correlation with bulb quantity. Plant height, leaf length, and number of leaves showed positive correlation with bulb weight as collections with better performance in growth produced large bulb with higher quality. The cluster analysis based on 5 principal components generated 6 clusters with an average distance of 1.6 among clusters. Domestic genetic resources were the largest with 36 species (22.5%) in group II.

Analysis of Genetic Diversity and Identification of Domestic Bred Phalaenopsis Varieties Using SRAP and SSR Markers (SRAP과 SSR 마커를 이용한 국내 육성 팔레놉시스 품종의 유전적 다양성 분석과 품종판별)

  • Park, Pue Hee;Park, Yong-Jin;Kim, Mi Seon;Lee, Young Ran;Park, Pil Man;Lee, Dong Soo;Yae, Byeong Woo
    • Horticultural Science & Technology
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    • v.31 no.3
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    • pp.337-343
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    • 2013
  • The aims of this study were to compare genetic distances among 14 Phalaenopsis varieties using simple sequence repeat (SSR) and sequence-related amplified polymorphism (SRAP) marker systems and to determine the discrimination using SSR. A total of 111 SSR primers and 30 SRAP combinations were initially screened. Twelve SSR primers and thirty SRAP combinations showed high polymorphism among the 14 Phalaenopsis varieties including domestic breeding varieties, conserved in National Institute of Horticultural & Herbal Science (NIHHS). The amplified DNA fragments were separated by denaturing acrylamide gels and detected by silver staining method. A total of 474 polymorphic bands, including 55 by SSRs and 419 by SRAPs, were identified and used for genetic diversity analysis. Polymorphic bands were scored for calculating a simple matching coefficient of genetic similarity and cluster analysis with multi-variate statistical package (MVSP) 3.1. Fourteen Phalaenopsis varieties were classified into three major groups at similarity coefficient value of 0.683 and 0.66 using SRAP and SSR, respectively. Also we could discriminate these domestic breeding Palaenopsis varieties using only SSR 20 and SSR 22. The results indicate that SSR analysis is effective for discrimination among Phalaenopsis varieties and SRAP is useful for genetic diversity when there is no sequence information. These studied SSR and SRAP markers will be useful tools for genotype identification, germplasm conservation and genetic relationship study in Phalaenopsis.

Syntaxonomy and Synecology of the Robinia pseudoacacia Forests (아까시나무림의 군락분류와 군락생태)

  • Cho, Kwang-Jin;Kim, Jong-Won
    • The Korean Journal of Ecology
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    • v.28 no.1
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    • pp.15-23
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    • 2005
  • The black locust (Robinia pseudoacacia L.) forests were studied by a phytosociological approach. Particular attention was given to characterize the vegetation classification, distribution pattern, and ecological flora of the syntaxa classified. A total of 38 releves were analyzed by using Correlation coefficient, UPGMA as the clustering method, and Principal Coordinates Analysis for ordination. Ecological flora analyzed by plant character sets such as scrambler, annual and biennial plants, forest elements, and actual urbanization index. The analyzed data are based on site-releve matrix with relative net contribution degree (r-NCD) of species. A total of 77 families, 193 genera and 323 species of vascular plants are recorded. Camellino-Robinietum pseudoacaciae ass. nov. and Phragmites-Robinia pseudoacacia community were described. Main cluster and ordination could be separated: 1) urban type, 2) rural type, 3) riparian type, and 4) combined type. It is defined that the Robinietum is a representative unit on the black locust afforestation, Phragmites-Robinia community on the lentic zone in the river ecosystem, and Cameliino-Robinietum ailanthetosum altissimae as an urban forest type. The Robinietum was considered as a perpetual community.

A Study on the Body Types of 40s,50s,60s of Obese Women (40, 50, 60대 비만체형 여성 체형 유형화에 관한 연구)

  • Kim, Hyo-Sook;Lee, Myung-Hee
    • Journal of the Korean Society of Clothing and Textiles
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    • v.32 no.4
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    • pp.618-629
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    • 2008
  • The objectives of this study were to classify body types of 40s, 50s, 60s obese women according to body measurements and to investigate relationships between age and body types of obese women. Body measurement was made on 497 obese women in their 40s, 50s, 60s whose BMI (Body Mass Index) was 25.0 or more when directly measured in 'Size Korea 2004'. Data were analyzed through factor analysis, cluster analysis, Pearson's correlation coefficient, $X^2$-test, t-test, one-way analysis of variance, and Duncan's multiple range test. First. the obesity group with BMI being 25.0-30.0 was composed of 23.1% subjects in their 40s, 43.3% subjects in their 50s, and 50.0% subjects in their 60th, which demonstrates that the older subjects were, the higher the distribution was. Adding the high obesity group with BMI being more than 30.0 to the obesity group, women in their 60s were 56.7%, the most of obese bodies. Second, factor analysis of obese women's BMIs revealed that five factors were elicited, including upper-body circumference related factor, height related factor, lower-body circumference related factor, upper-body width related factor, and upper-body related factor. As a result of analyzing the clusters, three types of body shapes were classified including upper-lower obesity, upper obesity, and lower obesity. Third, obese women were thicker or wider than non-obese individuals in those factors including upper-body circumference, lower-body circumference, and body width, and longer in upper-body length, while non-obese individuals were higher or longer than obese individuals in height related factors.

Shoes Purchasing Behavior and Wearing Satisfaction Related with Lifestyle of High School Girls (여고생의 라이프스타일에 따른 신발 구매 행동과 착용만족도)

  • Lee, So-Hyoung;Lee, Ji-Yeon;Park, Myung-Ja
    • Journal of the Korea Fashion and Costume Design Association
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    • v.12 no.2
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    • pp.75-90
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    • 2010
  • Teenagers are considered as one of important consumer groups by marketers because of their high purchasing power and impulsive purchasing propensity. Especially high school girls are most significant purchasing group of them. The purpose of this study is to investigate the effect of high school girls' lifestyle on shoes purchasing behavior and shoes wearing satisfaction. This study surveyed 428 high school girls in Seoul and Chonbuk area. Data were statistically analyzed using SAS 9.1.3 for Window. Major statistical methods are factor analysis, Cronbach's ${\alpha}$ coefficient, cluster analysis, frequency analysis, Chi-square test, multiple regression analysis, ANOVA and Duncan test. The shoes purchasing behavior is significantly different according to students' lifestyle. Activity-pursuing group's major shoes purchasing factor is practical use and fashion & scholar-pursuing group's major shoes purchasing factors are fashion and brand. Relationship between lifestyle and shoes purchasing pattern is as follows. Activity-pursuing group and fashion & scholar-pursuing group purchased shoes more frequently than family-pursuing group. Fashion & scholar-pursuing-group purchased shoes for the harmony of suit and shoes. As for wearing satisfaction, design is the primary factor and price was the least significant factor in sports shoes, while durability is the primary factor and material is the least significant factor for the casual shoes.

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Development of Korean Patient Classification System for Neonatal Care Nurses (한국형 신생아중환자간호 분류도구 개발)

  • Yu, Mi;Kim, Dong Yeon;Yoo, Cheong Suk
    • Journal of Korean Clinical Nursing Research
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    • v.22 no.2
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    • pp.205-216
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    • 2016
  • Purpose: This study was performed to develop a valid and reliable Korean Patient Classification System for Neonatal care nurses (KPCSN). Methods: The study was conducted in tertiary and general hospitals with 1~2 grade according to nursing fee differentiation policy for NICU (neonatal intensive care unit) nurse staffing. The reliability was evaluated for the classification of 218 patients by 10 nurse managers and 56 staff nurses working in NICUs from 10 hospitals. To verify construct validity, 208 patients were classified and compared for the type of stay, gestational age, birth weight, and current body weight. Nursing time was measured by nurses, nurse managers, and nurse aids. For the calculation of conversion index (total nursing time divided by the KPCSN score), 426 patients were classified using the KPCSN. Data were collected from September 5 to October 28, 2015, and analyzed using t-test, ANOVA, intraclass correlation coefficient, and non-hierarchial cluster analysis. Results: The final KPCSN consisted of 11 nursing categories, 71 nursing activities and 111 criteria. The reliability of the KPCSN was r=.83 (p<.001). The construct validity was established. The KPCSN score was classified into four groups; group $1:{\leq}57points$, group 2: 58~80 points, group 3: 81~108 points, and group $4:{\geq}109points$ in the KPSCN score. The conversion index was calculated as 7.45 minutes/classification score. Conclusion: The KPCSN can be utilized to measure specific and complex nursing demands for infants receiving care in the NICUs.

Design of Turbulent In-situ Mixing Mixer and Fabrication of Cu-TiB2 Nanocomposities (난류 용탕 In-situ 합성 믹서의 설계 및 Cu-TiB2 나노 복합재료의 제조)

  • Choi, Baek-Boo;Park, Jung-Su;Yun, Ji-Hun;Ha, Man-Young;Park, Yong-Ho;Park, Ik-Min
    • Korean Journal of Materials Research
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    • v.17 no.1
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    • pp.11-17
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    • 2007
  • Turbulent in-situ mixing process is a new material process technology to get dispersed phase in nanometer size by controlling reaction of liquid/solid, liquid/gas, flow ana solidification speed simultaneously. In this study, mixing which is the key technology to this synthesis method was studied by computational fluid dynamics. For the simulation of mixing of liquid metal, static mixers investigated. Two inlets for different liquid metal meet ana merge like 'Y' shape tube having various shapes and radios of curve. The performance of mixer was evaluated with quantitative analysis with coefficient of variance of mass fraction. Also, detailed plots of intersection were presented to understand effect of mixer shape on mixing. The simulations show that the Reynolds number (Re) is the important factor to mixing and dispersion of $TiB_2$ particles. Mixer was designed according to the simulation, and $Cu-TiB_2$ nano composites were evaluated. $TiB_2$ nano particles were uniformly dispersed when Re was 1000, and cluster formation and reduction in volume fraction of $TiB_2$ were found at higher Re.

Classification of Allium monanthum and A. grai by ISSR Markers (ISSR 마커를 이용한 달래와 산달래의 분류)

  • Lee, Sais-Beul;Kim, Chang-Kil;Oh, Jung-Yeol;Kim, Kyung-Min
    • Horticultural Science & Technology
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    • v.29 no.6
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    • pp.600-609
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    • 2011
  • One hundred twenty two accessions of 6 species in genus Allium were collected throughout 5 regions of Korea. Their genetic relationship was investigated by using inter simple sequence repeat (ISSR) markers. The morphological analysis was measured for 6 quantitative and quantified for 1 qualitative trait. ISSR analysis obtained a total of 370 polymorphic bands by using seventeen primers. The cluster analysis of genus Allium based on morphological data could identify three groups. The accessions of Allium belonged to the Allium monanthum clustered into five groups at genetic distance ranging from 0.94 on the base of ISSR analysis. Correlation analysis between morphological and ISSR analysis showed low coefficient(r = 0.036). These markers are thought to be used in research of molecular markers for classification and cross breeding of Allium monanthum and A. grai.

Evaluation of the genetic structure of indigenous Okinawa Agu pigs using microsatellite markers

  • Touma, Shihei;Arakawa, Aisaku;Oikawa, Takuro
    • Asian-Australasian Journal of Animal Sciences
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    • v.33 no.2
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    • pp.212-218
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    • 2020
  • Objective: Agu pigs are indigenous to the Okinawa prefecture, which is the southernmost region of Japan. Agu pigs were exposed to a genetic bottleneck during the 20th century, due to the introduction of European pig breeds. The objective of this study was to elucidate the genetic structure of Agu pigs and to determine their relationships with those of five European breeds, two Chinese breeds and Ryukyu wild boar using microsatellite markers. Methods: A total of 203 DNA samples from 8 pig breeds were used in this study. Genotyping was performed using 21 microsatellite markers distributed across 17 chromosomes. Results: Numbers of effective alleles in Agu pigs were fewer than in European breeds and Ryukyu wild boar. Among domestic pigs, Agu pigs had the lowest heterozygosity (0.423) and highest inbreeding coefficient (FIS = 0.202), indicating a severe loss of heterozygosity in Agu pigs possibly due to inbreeding. Neighbor-joining tree analysis was performed based on Reynolds' genetic distances, which clustered Agu pigs with Duroc pigs. However, principal component analysis revealed a unique genetic position of the Agu pig, and the second principal component separated Agu pigs from all other breeds. Structure analysis with the optimal assumption of seven groups (K = 7) indicated that Agu pigs form an independent cluster from the other breeds. In addition, high and significant FST values (0.235 to 0.413) were identified between Agu pigs and the other breeds. Conclusion: This study revealed a substantial loss of genetic diversity among Agu pigs due to inbreeding. Our data also suggest that Agu pigs have a distinctive genetic structure, although gene flows from European breeds were observed.

Spatio-Temporal Changes of Social-wellbeing: A Case Study of JeollaNamdo Region, 1985~2005 (복리환경의 시공간적 변화: 1985년~2005년 전남지역을 사례로)

  • Kim, Byeong-Sun;Kim, Young-Sung;Chung, Su-Yeul
    • Journal of the Korean association of regional geographers
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    • v.17 no.2
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    • pp.204-215
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    • 2011
  • One of the major concerns to improve social-wellbeing is uneven spatial distribution of public service. The paper analyses the changes in the geographic distribution of public service facilities over time. The analysis is with a case study about JeollaNamdo Province including Gwangju Metropolitan City, 1985~2005. It employed eighteen proxies in different fields to measure public service and utilized cluster analyses, and various summary statistics including Schutz's coefficient and regression. The results show that overall social well-being has improved during the two decades and the gap between Gwanju City and the major cities in the JeollaNamdo Province has narrowed. However, the disparity between mainland and island areas still persists, calling our attention to the island areas.

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