• Title/Summary/Keyword: center selection

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Use of In Vivo and In Vitro Systems to Select Leishmania amazonensis Expressing Green Fluorescent Protein

  • Costa, Solange Dos Santos;Golim, Marjorie De Assis;Bergmann, Bartira Rossi;Costa, Fabio Trindade Maranhao;Giorgio, Selma
    • Parasites, Hosts and Diseases
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    • v.49 no.4
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    • pp.357-364
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    • 2011
  • Various Leishmania species were engineered with green fluorescent protein (GFP) using episomal vectors that encoded an antibiotic resistance gene, such as aminoglycoside geneticin sulphate (G418). Most reports of GFP-Leishmania have used the flagellated extracellular promastigote, the stage of parasite detected in the midgut of the sandfly vector; fewer studies have been performed with amastigotes, the stage of parasite detected in mammals. In this study, comparisons were made regarding the efficiency for in vitro G418 selection of GFP-Leishmania amazonensis promastigotes and amastigotes and the use of in vivo G418 selection. The GFP-promastigotes retained episomal plasmid for a prolonged period and G418 treatment was necessary and efficient for in vitro selection. In contrast, GFP-amastigotes showed low retention of the episomal plasmid in the absence of G418 selection and low sensitivity to antibiotics in vitro. The use of protocols for G418 selection using infected BALB/c mice also indicated low sensitivity to antibiotics against amastigotes in cutaneous lesions.

TBM tunnelling on Rock

  • Pelizza, Sebastiano;Kim, Sang-Hwan
    • Journal of Korean Tunnelling and Underground Space Association
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    • v.6 no.2
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    • pp.85-100
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    • 2004
  • In this paper the historical and technological developments of rock TBM and the technical classification of the machines proposed by ITA (International Tunnelling Association) are initially presented. Then the general criteria for the TBMs selection are discussed and at the end the limiting geological conditions for the application of TBMs are analysed.

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Lossless Compression for Hyperspectral Images based on Adaptive Band Selection and Adaptive Predictor Selection

  • Zhu, Fuquan;Wang, Huajun;Yang, Liping;Li, Changguo;Wang, Sen
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • v.14 no.8
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    • pp.3295-3311
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    • 2020
  • With the wide application of hyperspectral images, it becomes more and more important to compress hyperspectral images. Conventional recursive least squares (CRLS) algorithm has great potentiality in lossless compression for hyperspectral images. The prediction accuracy of CRLS is closely related to the correlations between the reference bands and the current band, and the similarity between pixels in prediction context. According to this characteristic, we present an improved CRLS with adaptive band selection and adaptive predictor selection (CRLS-ABS-APS). Firstly, a spectral vector correlation coefficient-based k-means clustering algorithm is employed to generate clustering map. Afterwards, an adaptive band selection strategy based on inter-spectral correlation coefficient is adopted to select the reference bands for each band. Then, an adaptive predictor selection strategy based on clustering map is adopted to select the optimal CRLS predictor for each pixel. In addition, a double snake scan mode is used to further improve the similarity of prediction context, and a recursive average estimation method is used to accelerate the local average calculation. Finally, the prediction residuals are entropy encoded by arithmetic encoder. Experiments on the Airborne Visible Infrared Imaging Spectrometer (AVIRIS) 2006 data set show that the CRLS-ABS-APS achieves average bit rates of 3.28 bpp, 5.55 bpp and 2.39 bpp on the three subsets, respectively. The results indicate that the CRLS-ABS-APS effectively improves the compression effect with lower computation complexity, and outperforms to the current state-of-the-art methods.

A Study on Suitable Site Selection of Blood Clams (Tegillarca granosa) using Habitat Suitability Factors in Tidal Flat, Cheonsu and Garolim Bays (천수만, 가로림만 갯벌에서 서식지 적합인자를 이용한 꼬막 적지선정 연구)

  • Jeon, Seung Ryul;Heo, Seung;Cho, Yoon-Sik;Choi, Yong-Hyeon;Oh, Geu Rim
    • Journal of the Korean Society of Marine Environment & Safety
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    • v.24 no.6
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    • pp.764-772
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    • 2018
  • It is necessary to explore the possibility of alternative habitats and research the characteristics of basic habitats due to seeding, culturing and harvesting of blood clams (Tegillarca granosa) in tidal flats. Currently, dependence on naturally occurring spat is much higher than in other species, which may lead to a reduction in biological resources. In this study, we selected a total of 5 sites (Changgi, Hopo in Cheonsu Bay and Dangsan, Sachang, Wangsan in Garolim Bay) and examined habitat suitability factors for suitable site selection. Also, we considered the relationship of habitat suitability factors (Environment: water content, organic content; survival: mud content, mean size; growth: chlorophyll a). As a result, Wangsan had the highest score of the main habitat of blood clams (Habitat suitability score, Wangsan: 87; Dangsan: 86; Sachang: 81; Hopo: 78; and Changgi: 73). The sediment in Garolim Bay was fine-grained and the seasonal variation was lower than Cheonsu Bay. Therefore, it is considered that Garolim Bay is more suitable as a potential area and easy to utilize the space. In the future, search and selection of potential suitable sites could be considered to solve problems caused by the reduction of biological resources and the production for blood clams.

Development of Classification Model for hERG Ion Channel Inhibitors Using SVM Method (SVM 방법을 이용한 hERG 이온 채널 저해제 예측모델 개발)

  • Gang, Sin-Moon;Kim, Han-Jo;Oh, Won-Seok;Kim, Sun-Young;No, Kyoung-Tai;Nam, Ky-Youb
    • Journal of the Korean Chemical Society
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    • v.53 no.6
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    • pp.653-662
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    • 2009
  • Developing effective tools for predicting absorption, distribution, metabolism, excretion properties and toxicity (ADME/T) of new chemical entities in the early stage of drug design is one of the most important tasks in drug discovery and development today. As one of these attempts, support vector machines (SVM) has recently been exploited for the prediction of ADME/T related properties. However, two problems in SVM modeling, i.e. feature selection and parameters setting, are still far from solved. The two problems have been shown to be crucial to the efficiency and accuracy of SVM classification. In particular, the feature selection and optimal SVM parameters setting influence each other, which indicates that they should be dealt with simultaneously. In this account, we present an integrated practical solution, in which genetic-based algorithm (GA) is used for feature selection and grid search (GS) method for parameters optimization. hERG ion-channel inhibitor classification models of ADME/T related properties has been built for assessing and testing the proposed GA-GS-SVM. We generated 6 different models that are 3 different single models and 3 different ensemble models using training set - 1891 compounds and validated with external test set - 175 compounds. We compared single model with ensemble model to solve data imbalance problems. It was able to improve accuracy of prediction to use ensemble model.

A Feature Vector Selection Method for Cancer Classification

  • Yun, Zheng;Keong, Kwoh-Chee
    • Proceedings of the Korean Society for Bioinformatics Conference
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    • 2005.09a
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    • pp.23-28
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    • 2005
  • The high-dimensionality and insufficiency of gene expression profiles and proteomic profiles makes feature selection become a critical step in efficiently building accurate models for cancer problems based on such data sets. In this paper, we use a method, called Discrete Function Learning algorithm, to find discriminatory feature vectors based on information theory. The target feature vectors contain all or most information (in terms of entropy) of the class attribute. Two data sets are selected to validate our approach, one leukemia subtype gene expression data set and one ovarian cancer proteomic data set. The experimental results show that the our method generalizes well when applied to these insufficient and high-dimensional data sets. Furthermore, the obtained classifiers are highly understandable and accurate.

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DIVERGENT SELECTION FOR POSTWEANING FEED CONVERSION IN ANGUS BEEF CATTLE VI. REALIZED HERITABILITY ESTIMATES

  • Park, N.H.;Bishop, M.D.;Davis, M.E.
    • Asian-Australasian Journal of Animal Sciences
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    • v.7 no.4
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    • pp.475-479
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    • 1994
  • Postweaning performance data were obtained on 401 group fed purebred Angus calves from 24 selected sires (12 high and 12 low feed conversion sires) from 1983 through 1986 at the Northwestern Branch of the Ohio Agricultural Research and Development Center. A single generation divergent selection experiment was replicated four times (1983, 1984, 1985 and 1986) to obtain an realized heritability estimate for postweaning feed conversion. The 140-d postweaning period was divided into five 28-d periods. Realized heritability estimates for feed conversion by 28-d periods fluctuated greatly and demonstrated no particular pattern. Heritability was highest for the fourth period (between d 85 and 112 of postweaning period, 0.61). Thus, beef producers could successfully select for feed conversion.

Decision Making Algorithm for Adult Spinal Deformity Surgery

  • Kim, Yongjung J.;Hyun, Seung-Jae;Cheh, Gene;Cho, Samuel K.;Rhim, Seung-Chul
    • Journal of Korean Neurosurgical Society
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    • v.59 no.4
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    • pp.327-333
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    • 2016
  • Adult spinal deformity (ASD) is one of the most challenging spinal disorders associated with broad range of clinical and radiological presentation. Correct selection of fusion levels in surgical planning for the management of adult spinal deformity is a complex task. Several classification systems and algorithms exist to assist surgeons in determining the appropriate levels to be instrumented. In this study, we describe our new simple decision making algorithm and selection of fusion level for ASD surgery in terms of adult idiopathic idiopathic scoliosis vs. degenerative scoliosis.

PAPER MACHINE REBUILDS AND SOLUTIONS FOR PROCESS IMPROVEMENT

  • Yoon, Keon-Yeong;Choe, Dong-Hwi
    • Proceedings of the Korea Technical Association of the Pulp and Paper Industry Conference
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    • 2006.11a
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    • pp.131-151
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    • 2006
  • Rebuilding an existing paper machine is often a very profitable way for papermakers to increase the cash flow created by an older paper machine. Metso Paper has placed particular emphasis in recent years on developing concepts and products specifically for rebuild needs. The outcome of this work can now be seen as a wide selection of products offering quite possibly the best coverage of all time of specific improvement targets. Different needs can be addressed through truly different solutions. Selection the best-fit alternatives will offer great upgrade options for all paper machines and paper grades. Metso Paper's long experience with high-speed paper machines has been put to good use to create more cost-effective small and mid-sized solutions with the reliability and quality of bigger and faster paper machines. This paper has discussed some of the most interesting and latest configurations available today for paper machine and finishing area rebuilds.

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A Study on the Factor Analysis of Distribution Center Location Selection Using Analytic Hierarchy Process (AHP를 활용한 물류센터 입지 선정 요인 분석에 관한 연구)

  • Yang, Kwang-Mo
    • Journal of the Korea Safety Management & Science
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    • v.13 no.2
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    • pp.129-135
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    • 2011
  • Logistics parks make profits using the efficiency of time and space. Such logistics parks play an important role in a corporation creating operating profits as well as acting as a method of alternative investment for individuals. Logistics parks no longer simply store materials, but have become a place that plays an important role in various areas of corporate and individual activities, and thus the analysis of the selection of the location of logistics parks and the related characteristics is extremely important. The estimation model is established by the weights for industry derived from AHP(Analytic Hierarchy Process).