• Title/Summary/Keyword: canonical analysis

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Development and Application of Water Quality Level Model (WQLM) for the Small Streams of Rural Watersheds with Discriminant Analysis (판별분석을 통한 농촌유역 소하천의 수질등급모형(WQLM) 개발 및 적용)

  • Kim, Jin-Ho;Choi, Chul-Mann;Ryu, Jong-Soo;Jung, Goo-Bok;Shin, Joung-Du;Han, Kuk-Heon;Lee, Jung-Taek;Kwun, Soon-Kuk
    • Journal of Korean Society on Water Environment
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    • v.23 no.2
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    • pp.260-265
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    • 2007
  • This study was carried out to complement water quality standards and to establish new concept for water quality standards reflecting current state of water quality in small streams. By this purpose, discriminant analysis was performed and Water Quality Level Model (WQLM) was developed using the data such as EC, BOD, $COD_{Mn}$, SS, T-N, T-P, $NH_3-N$ in 224 agricultural streams. To give water quality level for water quality parameters, it divided into 20% respectively in the order of excellent water quality. On the basis of the lowest water quality level, water quality level of small streams is granted. As a result of it, number of stream corresponding to Level I was no, Level II was 2 streams, Level III was 22 streams, Level IV was 70 streams, and Level V was 130 streams. Average of water quality in each level was the highest in Level V. EC, SS, and T-N of 7 parameters were selected in variance concerned water quality level. By standardized canonical discriminant function coefficient, EC of three variances was the highest in 0.625 at the discriminant power. The next was T-N (0.509), SS (0.414). By discriminant function for water quality level, Level II was equal to $-2.973+19.376{\times}(EC)+0.647{\times}(T-N)+0.009{\times}(SS)$, Level III was equal to $-3.288+19.190{\times}(EC)+0.733{\times}(T-N)+0.041{\times}(SS)$, Level IV was equal to $-4.462+27.097{\times}(EC)+0.792{\times}(T-N)+0.053{\times}(SS)$, and Level V was equal to $-9.117+40.040{\times}(EC)+1.305{\times}(T-N)+0.111{\times}(SS)$. As a result of test at real agricultural watershed of Jeongan and Euidang in Gongju city, the fitness of WQLM was high to 88.78%. But, to get accomplished water quality assessment more exactly in agricultural streams, we had to concentrate and get vast data, and WQLM was modified and complemented continually.

Hydrochemical and Microbial Community Characteristics of Spring, Surface Water and Groundwater at Samtong in Cheorwon, South Korea (강원도 철원 샘통과 주변 지표수 및 지하수의 수리화학 및 미생물 군집 특성 연구)

  • Han-Sun Ryu;Jinah Moon;Heejung Kim
    • The Journal of Engineering Geology
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    • v.33 no.2
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    • pp.257-273
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    • 2023
  • Hydrochemical characteristics and microbial communities of spring (Samtong), surface water, and groundwater in Cheorwon, Korea, were analyzed. Field surveys and water quality analyses were undertaken at 10 sampling points for five spring, two surface, and three groundwater samples on 15 December 2022. Hydrochemical analysis revealed that most water samples were Ca-HCO3 type and that water-rock interactions were the predominant mineral source. Radon concentrations were <1 kBq m-3 for surface water, 1~10 kBq m-3 for spring water, and 1~1,000 kq m-3 for groundwater. Microbial cluster analysis showed that the main phyla were Proteobacteria, Planctomyceta, Verrucomicrobia, Acidobacteria, and Actinomycetota.Non-metric multidimensional scaling (NMDS) analysis indicated that water temperature, pH, and Si content were closely related to microorganism content. NMDS and canonical correspondence analysis results revealed that environmental factors affecting spring water were temperature, and Mg and Si concentrations, particularly for Acidobacteria and Proteobacteria, and Pseudomonas brenneri. Both hydrochemical and microbial community analyses yielded similar results at some spring and groundwater sampling points, likely due to the effects of a basalt aquifer.

Vegetation Structure of Urban Forests on Mt. Goehwa, Sejong-Si (세종시 괴화산 도시숲의 식생구조)

  • Hyeon-Hwa Kim;Jeong-Eun Lee;Sung-Yeon Lee;Da-Eun Park;Chung-Weon Yun
    • Journal of Korean Society of Forest Science
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    • v.113 no.1
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    • pp.51-65
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    • 2024
  • Phyto-sociological methods were used in this study to assess the vegetation structure of a forest stand at Mt. Goehwa in Sejong-Si with the aim of providing vegetation information for urban forest utilization and management plans. The actual forest vegetation was classified into two types of community groups (Quercus serrata-Lindera obtusiloba and Coreopsis lanceolata community groups) at the highest hierarchical level. The Q. serrata-L. obtusiloba community group was classified into six units, which included artificial forest and natural forest vegetation. Artificial forests were classified into three communities (Pinus rigida, Castanea crenata, and Robinia pseudoacacia), whereas natural forests were classified into three communities (Quercus variabilis, Quercus acutissimaa, and Pinus densiflora). The Coreopsis lanceolata community group, which exhibited vegetative characteristics of urban forest edge areas, was categorized into four units. The urban forest edges were classified into four communities (Indigofera bungeana, Lespedeza bicolor, Amorpha fruticosa, and Lespedeza cuneata). Accordingly, the vegetation structure of Mt. Goehwa was categorized into 10 vegetation unit systems. An importance value analysis showed the highest importance value for C. crenata at 6.7%, followed by P. rigida at 6.4%, and R. pseudoacacia at 6.3%, indicating that the ecological impact of plantation species can be significant on Mt. Goehwa. A community coefficient of similarity analysis revealed that the artificial and natural forests had similar species compositions; however, both forests differed from the urban forest edge. This variation was further confirmed by Detrended correspondence analysis(DCA), with similar results. Canonical correspondence analysis(CCA) showed that the artificial forest and natural forest community types were positively correlated with altitude, bare rock, and the present species. By contrast, the urban forest edge community types were negatively correlated with these factors.

Genomic Organization and Characterization of the Promoter Region of Bovine ADRP (Adipocyte Different Related Protein) Gene (소 Adipocyte Differentiation Related Protein (ADRP) 유전자의 Genomic Organization 및 Promoter Region의 특성 규명)

  • Jang, Y. S.;Yoon, D. H.;Kim, T. H.;Cheong, I. C.;Jo, J. K.
    • Journal of Animal Science and Technology
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    • v.45 no.2
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    • pp.169-182
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    • 2003
  • To understand the structure and regulation of bovine ADRP (Adipocyte Differentiation Related Protein) gene, we have isolated the genomic clone of bovine ADRP and determined its sequence. A genomic Southern blot analysis confirmed that ADRP gene is present as a single copy in bovine genome and the ADRP gene spans 12 kb. Bovine ADRP genomic clone, HwADRPg-1, had 8 exons and 7 introns, and all splicing sites conformed to the GT/AG rule with the exon-intron boundaries located exactly. Analysis of the upstream 649 bp of the sequence of HwADRPg-1 showed that it does not contain any canonical TATAA boxes; however Sp1 binding sites and CAAT boxes are found. The promoter contained potential binding sites for AP-1, AP-2 and several putative transcription factor binding sites. The 5'-flanking region of HwADRPg-1 contained muscle specific transcription activator Myo G and C/EBP (CCAAT/ enhancer binding protein) recognizing site. These results suppose that the Myo G transcription activator regulate the transcription of bovine ADRP gene in muscular tissue and its transcriptional activity was triggered by degree of muscular development. Our results provide the necessary analysis for other flanking sequences are needed in addition to the proximal cis elements of this promoter to confer adipocyte differentiation-dependent or growth-dependent transcriptional control.

The Analysis on the Forest Community of Raised Bog in Mt. Daeam (대암산(大岩山) 고층습원(高層濕原) 주변(周邊)의 산림군집(森林群集) 분석(分析))

  • Song, Ho Kyung;Kwon, Ki Won;Yim, Kyong Bin;Cheong, Jin Cheol;Jang, Kyu Gwan
    • Korean Journal of Agricultural Science
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    • v.20 no.2
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    • pp.145-152
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    • 1993
  • Vegetational data obtained from 15 quadrats of Mt. Daeam area were analysed by applying two multivariate methods : two-way indicator species analysis(TWINSPAN) for classification and detrended canonical correspondence analysis(DCCA) for ordination. The dominant tree species were Quercus mongolica, Acer pseudo-sieboldianum, Betula costata, and Acer mono in descending order. The pH ranges were 5.0 to 5.5 in the 15 sites near bog and 5.3 to 5.4 in the 3 sites within bog. The forest communities in Mt. Daeam were classified into Quercus mongolica-Acer mono, Quercus mongolica-Prunus sargentii, Quercus mongolica-Abies nephrolepis-Acer tschonoskii var, rubripes, and Quercus mongolica-Abies nephrolepis-Betula costata according to the TWINSPAN. The relationships between the distribution of dominant species of forest vegetation and soil in the forest of Mt. Daeam were investigated by analyzing soil nutrition gradient. Quercus mongolica-Prunus sargentii forests were distributed in the good sites in nutrition levels of total nitrogen, cation exchange capacity, $Mg^{+{+}}$ and $Ca^{+{+}}$ but Quercus mongolica-Abies nephrolepis-Betula costata forests in the poor sites in the nutrition levels.

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An Analysis of Vegetation-Environment Relationship in Mt. ManDeok by TWINSPAN (Two-Way Indicator Species Analysis) and DCCA (Detrended Canonical Correspondence Analysis) Ordination (TWINSPAN과 DCCA에 의한 만덕산(萬德山)의 삼림군낙(森林群落)과 환경(環境)의 상관(相關) 분석(分析)에 관(關)한 연구(硏究))

  • Chung, Jin Chul;Jeon, Kyung Soo;Jang, Kyu Kwan;Choi, Jung Ho
    • Journal of Korean Society of Forest Science
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    • v.83 no.2
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    • pp.262-269
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    • 1994
  • In order to determine ecological niches of forests in Mt. ManDeok, the studies were analyzed on the methods of TWINSPAN and DCCA ordination. The results are summarized as follows ; Four groups were determined by TWINSPAN : Styrax japonica. Quercus variabilis-Quercus mongolica, Carpinus laxiflora and Fraxinus mandshurica-Cornus controversa communities. In the relations of community structures and environmental factors, Styrax japonica community were distributed in the rich site of magnesium and organic matter, Quercus variabilis-Quercus mongolica community in the low potassium, Carpinus laxiflora community in the low available phosphorus, and the factors in influencing community distribution were elevation. The importance value of Quercus variabilis recorded the highest in all the quadrats sampled and the next values then came those Cornus controversa. Quercus variabilis, Lindera erythrocarpa. Quercus mongolica, Fraxinus mandshurica. Cornus controversa, Symplocos chinensis for pilosa, Acer mono, Carpinus laxiflora, and Styrax japonica in the orders. The species diversities of major dominant species recorded the highest value in the communities of Quercus variabilis-Quercus mongolica but they lowest value in the communities of Fraxinus mandshurica-Cornus controversa.

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Interplay between Brassinosteroid and ABA signaling during early seedling development (유식물 발달과정에서 브라시노스테로이드와 앱시스산 신호전달의 상호작용 연구)

  • Kim, Hyemin;Hong, Jeongeui;Cho, Yong-Gu;Kang, Kwon Kyoo;Ryu, Hojin
    • Journal of Plant Biotechnology
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    • v.44 no.3
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    • pp.264-270
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    • 2017
  • Brassinosteroid (BR), a plant steroid hormone, plays a critical role in the growth and developmental processes through its canonical signaling and crosstalk with various internal and external signaling pathways. Recent studies have revealed the essential interplay mechanisms between BR and ABA during seed germination and early seedling establishment. However, molecular mechanisms for this important signaling crosstalk are largely unknown. To understand the crosstalk between BR-mediated signaling pathways and ABA functions during early seedling development, we carried out a comparative genome-wide transcriptome analysis with an Agilent Arabidopsis $4{\times}44K$ oligo chip. We selected and compared the expression patterns of ABA response genes in ABA-insensitive bes1-D mutant with wild type seedlings on which ABA was exogenously applied. As a result, we identified 2,353 significant differentially expressed genes (DEGs) in ABA-treated bes1-D and wild type seedlings. GO enrichment analysis revealed that ABA signaling, response, and metabolism were critically down-regulated by BR-activated signaling pathways. In addition, the genome-wide transcriptome analysis data revealed that BR-regulated signaling pathways were tightly connected to diverse signal cues including abiotic/biotic stress, auxin, ROS etc. In this study, we newly identified the molecular mechanisms of BR-mediated repression of ABA signaling outputs. Also, our data suggest that interplay among diverse signaling pathways is critical for the adaptive response of the plant to various environmental factors.

한국산 빗살거미불가사리속(빗살거미불가사리과, 거미불가사리아강)의 3 종에 대한 분류학적 재검토

  • 유재원;홍재상;박흥식
    • Animal Systematics, Evolution and Diversity
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    • v.11 no.4
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    • pp.417-434
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    • 1995
  • Three species (0. kinbergi, 0. sarsi and 0 . sarsi vadicola) of the genus Ophiura (Echinodermacta: Ophiuroidea) were sampled from the various localities of Korean waters (Kyonggi Bay in March and September, 1989 and February, 1994; Yellow Sea in September and October, 1992; Southern Sea and Korean Strait in May, 1992; and eastern coasts adjacent to Kangnung in April, July, October, 1993 and January, 1994). Results of the examination of 250 Operational Taxonomical Units (OTUs) are presented based on the 20 morphometric variables to evaluate their taxonomic characters and positions. In cluster analysis, 250 OTUs were divided into 3 phenons (0. kinbergi, 0 . sarsi and 0 . sarsi vadicola) at the Euclidean distance levels of 6.84 and 2 phenons (a phenon composed of 0 . sarsi and 0 . sarsi vadicola and the other of 0. kinbergi) at 7.50. Stepwise discriminant analysis was used in order to produce a good discrimination model and 13 morphological characters (the total number of comb papillae, the number of primary comb papillae and shape of comb papillae (2). etc.) were extracted. The results of canonical discriminant analysis illustrated clear distinction among 3 phenons by the distance of 8.26 between 0 . sarsi and 0. sarsi vadicola, 24.24 between 0 . kinbergi and 0. sarsi vadicola and 21.63 between 0 . kinbergi and 0 . sarsi.

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Syntaxonomical and Synecological Research of Forest Vegetation on Mt. Byeokbang (벽방산 산림식생의 군락분류와 군락생태)

  • Choi, Byoung-Ki;Huh, Man-Kyu;Kim, Seong-Yeol
    • Journal of Life Science
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    • v.25 no.6
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    • pp.646-655
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    • 2015
  • A phytosociological survey carried out using the Z.-M. School’s methodology and system of numerical-classification analyses, this study sought to classify the syntaxa of forest vegetation on Mt. Byeokbang and to collect basic data on the transitional zones of the southern Korean peninsula’s coastal region. The syntaxa were classified into three physiognomic types and nine communities, including (1) evergreen coniferous forests (Eurya japonica-Pinus thunbergii community and Ardisia japonica-Pinus densiflora community), (2) summer-green, broad-leaved forests (Chloranthus japonicus-Quercus serrate community, Syneilesis palmata-Quercus mongolica community, Quercus acutissima community, Carpinus turczaninovii var. coreana community, Fraxinus siebolidiana-Quercus dentate community, and Deutzia glabrata-Lindera erythrocarpa community), and (3) artificial afforestation (Alnus firma afforestation). The Chloranthus japonicus-Quercus serrata community, Syneilesis palmata-Quercus mongolica community, Fraxinus siebolidiana-Quercus dentata community, Carpinus turczaninovii var. coreana, community and Deutzia glabrata-Lindera erythrocarpa community were closely evaluated for national vegetation naturalness. It was confirmed that the Carpinus turczaninovii var. coreana community was endemic to Korea. Most syntaxa were defined as a secondary forestation due to various human activities (e.g., forest fires, logging, digging, climbing, etc.). The results of a canonical-correspondence analysis (CCA) showed that human activities, altitude, humus depth, rock cover ratio, slope, etc. were the main ecological factors determining the classified plant communities’ distribution patterns.

Discrimination of Geographical Origin for Herbal Medicine by Mineral Content Analysis with Energy Dispersive X-Ray Fluorescence Spectrometer (에너지분산형 X-선 형광분석기를 이용한 한약재의 무기질 분석 및 이에 의한 원산지 판별)

  • Jeong, Myeong-Sil;Lee, Soo-Bok
    • Korean Journal of Food Science and Technology
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    • v.40 no.2
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    • pp.135-140
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    • 2008
  • In this study, the macromineral content ratios of four herbal medicine samples(Saposhnikoviae Radix, Bupleuri Radix, Cnidii Rhizoma, and Astragali Radix) were analyzed to discriminate their geographical origins using an energydispersive x-ray fluorescence (EDXRF) technique. EDXRF is a rapid, non-destructive, and multi-elemental analysis technique. Initially, samples of both domestic and imported herbal medicines were pulverized, and then their macromineral contents, including P, S, K, and Ca, were analyzed using EDXRF. For the discrimination of their geographical origins, canonical discriminant analysis was carried out based on the estimated macromineral relative content ratios of the samples. According to the results, the discrimination accuracies were as follows: 93.3% for Saposhnikoviae Radix, 95.7% for Bupleuri Radix, 98.8% for Cnidii Rhizoma, and 87.5% for Astragali Radix. Overall, the results imply that this technique could be used as a standard method, to discriminate their geographical origins between domestic and imported herbal medicines.