• Title/Summary/Keyword: canonical analysis

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The Community Ecology of Mobile Macrofauna (Fish and Decapod) at the Youngjong Tiny Tidepools, Incheon, Korea (영종도 소형 조수웅덩이에 서식하는 이동성 대형 동물 (어류와 십각류)의 군집생태)

  • Kim, Byung-Gi;Kim, Byung-Pyo;Han, Kyung-Nam
    • Korean Journal of Ichthyology
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    • v.27 no.3
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    • pp.205-216
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    • 2015
  • Mobile macrofauna and community structure were studied at the Youngjong tiny tidepools, Incheon, Korea. Samples were monthly collected from February 2010 to January 2011. Mobile macrofauna community comprised a total of 18 species, including 1,122 individuals and 623.6 gWWt. The dominant species were Luciogobius guttatus, Tridentiger bifasciatus, Hemigrapsus penicillatus, Pagurus minutus. The number of species and biomass were low from December to March, and high from April to November. Canonical correspondence analysis revealed that temperature were the most important environmental variables in determining the observed variability in community composition. Species diversity indices ranged from 0.14 to 2.05, and showed the highest value in October 2010. The tide pools provide spawning ground and nursery ground for some fishes and decapods.

An investigation of seasonal variations in the microbiota of milk, feces, bedding, and airborne dust

  • Nguyen, Thuong Thi;Wu, Haoming;Nishino, Naoki
    • Asian-Australasian Journal of Animal Sciences
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    • v.33 no.11
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    • pp.1858-1865
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    • 2020
  • Objective: The microbiota of dairy cow milk varies with the season, and this accounts in part for the seasonal variation in mastitis-causing bacteria and milk spoilage. The microbiota of the cowshed may be the most important factor because the teats of a dairy cow contact bedding material when the cow is resting. The objectives of the present study were to determine whether the microbiota of the milk and the cowshed vary between seasons, and to elucidate the relationship between the microbiota. Methods: We used 16S rRNA gene amplicon sequencing to investigate the microbiota of milk, feces, bedding, and airborne dust collected at a dairy farm during summer and winter. Results: The seasonal differences in the milk yield and milk composition were marginal. The fecal microbiota was stable across the two seasons. Many bacterial taxa of the bedding and airborne dust microbiota exhibited distinctive seasonal variation. In the milk microbiota, the abundances of Staphylococcaceae, Bacillaceae, Streptococcaceae, Microbacteriaceae, and Micrococcaceae were affected by the seasons; however, only Micrococcaceae had the same seasonal variation pattern as the bedding and airborne dust microbiota. Nevertheless, canonical analysis of principle coordinates revealed a distinctive group comprising the milk, bedding, and airborne dust microbiota. Conclusion: Although the milk microbiota is related to the bedding and airborne dust microbiota, the relationship may not account for the seasonal variation in the milk microbiota. Some major bacterial families stably found in the bedding and airborne dust microbiota, e.g., Staphylococcaceae, Moraxellaceae, Ruminococcaceae, and Bacteroidaceae, may have greater influences than those that varied between seasons.

Seasonal Variation of Mesozooplankton Communities in the Semi-enclosed Muan Bay, Korea (반 폐쇄된 무안만 중형동물플랑크톤 군집의 계절 변동)

  • Moon, Seong-Yong;Seo, Min-Ho;Shin, Yong-Sik;Soh, Ho-Young
    • Ocean and Polar Research
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    • v.34 no.1
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    • pp.1-18
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    • 2012
  • We investigated seasonal changes in the mesozooplankton community structure in November 2006 and February, May, and August 2007 at 12 stations in the semi-enclosed Muan Bay, Korea. Forty taxa were sampled, with an average abundance ranging from 1,459 to 20,078 indiv. $m^{-3}$; the highest abundance was detected in August 2007, and the lowest in February 2007. Acartia omorii, A. hudsonica, A. ohtsukai, Bestiolina coreana, Calanopia sp., Paracalanus parvus s. l., Cirripedia larvae, Decapoda larvae, and Gastropoda larvae were the most abundant taxa detected. The species diversity of the mesozooplankton was high around the inner regions in August 2007 but it was relatively low in November 2006. Non-metric multidimensional scaling (nMDS) revealed significant differences in the structure of mesozooplankton community among the seasons. Canonical correspondence analysis (CCA), performed to examine the relationships among dominant taxa, stations, and environmental variables, showed that most species of copepods were positively correlated with temperature, salinity, chlorophyll a, and COD concentration. Our results suggested that the mesozooplankton community structure observed in this study might be affected partly by the seasonal changes in environmental variables, such as the status of the sluice gates (i.e., open or closed) and the in situ production of resting eggs by major copepods.

Cyclic tensile stress inhibits Wnt/${\beta}$-catenin signaling in human periodontal ligament cells

  • Kim, Ji-Young;Yang, Daum;Kim, Ha-Neui;Jung, Kyoung-Suk;Chang, Young-Il;Lee, Zang-Hee
    • International Journal of Oral Biology
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    • v.34 no.2
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    • pp.53-59
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    • 2009
  • Periodontal ligament (PDL) tissue is a connective tissue that is interposed between the roots of the teeth and the inner wall of the alveolar bone socket. PDL is always exposed to physiologic mechanical force such as masticatory force and PDL cells play important roles during orthodontic tooth movement by synthesizing and secreting different mediators involved in bone remodeling. The Wnt/${\beta}$-catenin signaling pathway was recently shown to play a significant role in the control of bone formation. In the present study, we applied cyclic tensile stress of 20% elongation to cultured human PDL cells and assessed its impact after six days upon components of the Wnt/${\beta}$-catenin signaling pathway. RTPCR analysis showed that Wnt1a, Wnt3a, Wnt10b and the Wnt receptor LRP5 were down-regulated, whereas the Wnt inhibitor DKK1 was up-regulated in response to these stress conditions. In contrast, little change was detected in the mRNA expression of Wnt5a, Wnt7b, Fz1, and LRP6. By western blotting we found decreased expression of the ${\beta}$-catenin and p-GSK-3${\beta}$ proteins. Our results thus show that mechanical stress suppresses the canonical Wnt/${\beta}$-catenin signaling pathway in PDL cells.

Zooplankton Community and Distribution in Relation to Water Quality in the Saemangeum Area, Korea: Change in Zooplankton Community by the Construction of Sea Dyke (새만금 수질 환경과 동물플랑크톤 군집 분포: 방조제 건설에 따른 군집 변화)

  • Yoo, Jeong-Kyu;Jeong, Jeong-Ho;Nam, Eun-Jung;Jeong, Kyung-Mi;Lee, Soon-Woo;Myung, Cheol-Soo
    • Ocean and Polar Research
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    • v.28 no.3
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    • pp.305-315
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    • 2006
  • In order to examine the transition of zooplankton community by the Saemangeum sea dyke, the temporal and spatial distribution of zooplankton community with relation to environmental variables was investigated using data collected in 2004 and 2005. Sixty-one zooplankton taxa were identified. Average abundance (except Noctiluca scintiliam) ranged from 236 to 1810 indiv. $m^{-3}$, and was the highest in May 2005 and the lowest in february 2005. Dominant species were Acartia hongi and Paracalanus indicus, and cirripedia nauplii and zoea were dominant groups. After the closure of the 4th sea dyke, brackish species such as Tortanus derjugini and Pseudodiaptomus inopinus are widely distributed while the abundance of N. scintillans decreased in the northern area inside the dyke. In canonical correspondence analysis (CCA) for examining the relationships among zooplankton, stations and environmental variables, the northern area inside the dyke was distinguished from the other areas and was represented by Acartia spp, and brackish copepods.; Also, this area was characterized by high chlorophyll a concentration and COD, and low diversity.

Postnatal Expressional Patterns of Adipose-Associated Molecules in the Mouse Proximal Epididymal Fat

  • Lee, Ki-Ho
    • Development and Reproduction
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    • v.23 no.4
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    • pp.313-322
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    • 2019
  • The epididymal fat pad is a male gonadal adipocyte tissue and is histochemically separated into distal and proximal parts. The development of epididymal fat during postnatal period has not been examined in detail. A previous research showed that expression of adipocyte-associated molecules in the distal epididymal fat of mouse is generally increased as postnatally aged. In the present study, expressional patterns of same adipocyte-associated molecules in the mouse proximal epididymal fat at 2, 5, 8, and 12 months of age were studied by quantitative real-time PCR analysis and were compared with those in the distal epididymal fat. The expressional levels of peroxisome proliferator-activated receptor gamma (Pparg), lipoprotein lipase (Lpl), and fatty acid synthase (Fasn) at 5 months of age were significantly lower than those at 2 months of age, while transcript level of leptin (Lep) at 5 months was higher than that at 2 months of age. The transcript levels of all molecules at 8 months of age were significantly increased, compared with those at 2 and 5 months of age. At 12 months of age, expression of delta like non-canonical Notch ligand 1 (Dlk1) was further significantly increased, while there was no change on the transcript level of Pparg and significant decreases of Fabp4, Retn, Lpl, Lep, Fasn, and adiponectin (Adipoq) transcript levels. The current findings show that expressional patterns of molecules associated with adipocyte in the proximal epididymal fat is somewhat different with those of the distal epididymal fat, suggesting the existence of regional variance in the epididymal fat.

Efficient Designs to Develop a Design Space in Mixture Response Surface Analysis (혼합물 반응표면분석에서 디자인 스페이스 구축을 위한 효율적인 실험계획)

  • Chung, Jong Hee;Lim, Yong B.
    • Journal of Korean Society for Quality Management
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    • v.48 no.2
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    • pp.269-282
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    • 2020
  • Purpose: The practical design for experiments with mixtures of q components is consisted in the four types of design points, vertex, center of edge, axial, and center points in a (q-1)-dimensional simplex space. We propose a sequential method for the successful construction of the design space in Quality by Design (QbD) by allowing the different number of replicates at the four types of design points in the practical design when the quadratic canonical polynomial model is assumed. Methods: To compare the mixture designs efficiency, fraction of design space (FDS) plot is used. We search for the practical mixture designs whose the minimal half-width of the tolerance interval per a standard deviation, which is denoted as d2, is less than 4.5 at 0.8 fraction of the design space. They are found by adding the different number of replicates at the four types of the design points in the practical design. Results: The practical efficient mixture designs for the number of components between three and five are listed. The sequential method to establish a design space is illustrated with the two examples based on the simulated data. Conclusion: The designs with the center of edge points replications are more efficient than those with the vertex points replication. We propose the sample size of at least 23 for three components, 28 for four components, and 33 for the five components based on the list of efficient mixture designs.

Application of the Central Composite Design and Response Surface Methodology to the Treatment of Dye using Electrocoagulation/flotation Process (전기응집/부상 공정을 이용한 염료 처리에 중심합성설계와 반응표면분석법의 적용)

  • Kim, Dong-Seog;Park, Young-Seek
    • Journal of Korean Society on Water Environment
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    • v.26 no.1
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    • pp.35-43
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    • 2010
  • This experimental design and response surface methodology (RSM) have been applied to the investigation of the electrocoagulation/flotation of dye wastewater. The electrocoagulation/flotation reactions were mathematically described as a function of parameters current (A), NaCl concentration (B), initial RhB concentration (C) and time (D) being modeled by use of the central composite design (CCD). The application of RSM using the CCD yielded the following regression equation, which is an empirical relationship between the RhB removal (%) and test variables in RhB removal (%) = $-300.42+129.21{\cdot}Current+46.99{\cdot}NaCl-0.11{\cdot}RhB-+43.71{\cdot}Time-5.67{\cdot}Current{\cdot}NaCl-3.18{\cdot}Current{\cdot}Time-2.41{\cdot}NaCl{\cdot}Time-19.79{\cdot}Current^2-2.27{\cdot}NaCl^2-1.59{\cdot}Time^2$. the model predictions agreed well with the experimentally observed result ($R^{2}=0.9728$). The estimated ridge of maximum response and optimal conditions for RhB removal (%) using canonical analysis was 99.4% (A: 1,77 A, NaCl concentration: 2.23 g/L, RhB concentration: 56.12 mg/L, Time: 9.98 min). To confirm this optimum condition, three additional experiments were performed and RhB removal (%) were within range of 86.87% (95% PI low)~111.93% (95% PI high) obtained.

A Study on Ontology-based Keywords Structuring for Efficient Information Retrieval (연구.학술정보 효율적 검색을 위한 온톨로지 기반의 주제 색인어 구조화 방안 연구)

  • Song, In-Seok
    • Journal of Information Management
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    • v.39 no.4
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    • pp.121-154
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    • 2008
  • In this paper, a ontology-based keyword structuring method is proposed to represent the knowledge structure of scholarly documents and to make inferences from the semantic relationships holding among them. The characteristics of thesaurus as a knowledge organization system(KOS) for subject heading is critically reviewed from the information retrieval point of view. The domain concepts are identified and classified by analysis of the information activities occurring in a general research process based on scholarly sensemaking model. The ontological structure of keyword set is defined in terms of the semantic relationship of the canonical concepts which constitute scholarly documents such as journal articles. As a result, each ontologically structured keyword set of a document represents the knowledge structure of the corresponding document as semantic index. By means of the axioms and inference rules defined for information needs, users can efficiently explore the scholarly communication network built on the semantic relationship among documents in an analytic way based on the scholarly sensemaking model in oder to efficiently retrieve the relevant information for problem solving.

Rapid Implementation of 3D Facial Reconstruction from a Single Image on an Android Mobile Device

  • Truong, Phuc Huu;Park, Chang-Woo;Lee, Minsik;Choi, Sang-Il;Ji, Sang-Hoon;Jeong, Gu-Min
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • v.8 no.5
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    • pp.1690-1710
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    • 2014
  • In this paper, we propose the rapid implementation of a 3-dimensional (3D) facial reconstruction from a single frontal face image and introduce a design for its application on a mobile device. The proposed system can effectively reconstruct human faces in 3D using an approach robust to lighting conditions, and a fast method based on a Canonical Correlation Analysis (CCA) algorithm to estimate the depth. The reconstruction system is built by first creating 3D facial mapping from a personal identity vector of a face image. This mapping is then applied to real-world images captured with a built-in camera on a mobile device to form the corresponding 3D depth information. Finally, the facial texture from the face image is extracted and added to the reconstruction results. Experiments with an Android phone show that the implementation of this system as an Android application performs well. The advantage of the proposed method is an easy 3D reconstruction of almost all facial images captured in the real world with a fast computation. This has been clearly demonstrated in the Android application, which requires only a short time to reconstruct the 3D depth map.