• Title/Summary/Keyword: biomedical literature

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Inferring Disease-related Genes using Title and Body in Biomedical Text (생물학 문헌 데이터의 제목과 본문을 이용한 질병 관련 유전자 추론 방법)

  • Kim, Jeongwoo;Kim, Hyunjin;Yeo, Yunku;Shin, Mincheol;Park, Sanghyun
    • KIISE Transactions on Computing Practices
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    • v.23 no.1
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    • pp.28-36
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    • 2017
  • After the genome projects of the 90s, a vast number of gene studies have been stored in online databases. By using these databases, several biological relationships can be inferred. In this study, we proposed a method to infer disease-gene relationships using title and body in biomedical text. The title was used to extract hub genes from data in the literature; whereas, the body of the literature was used to extract sub genes that are related to hub genes. Through these steps, we were able to construct a local gene-network for each report in the literature. By integrating the local gene-networks, we then constructed a global gene-network. Subsequent analyses of the global gene-network allowed inference of disease-related genes with high rank. We validated the proposed method by comparing with previous methods. The results indicated that the proposed method is a meaningful approach to infer disease-related genes.

Knowledge Trend Analysis of Uncertainty in Biomedical Scientific Literature (생의학 학술 문헌의 불확실성 기반 지식 동향 분석에 관한 연구)

  • Heo, Go Eun;Song, Min
    • Journal of the Korean Society for information Management
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    • v.36 no.2
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    • pp.175-199
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    • 2019
  • Uncertainty means incomplete stages of knowledge of propositions due to the lack of consensus of information and existing knowledge. As the amount of academic literature increases exponentially over time, new knowledge is discovered as research develops. Although the flow of time may be an important factor to identify patterns of uncertainty in scientific knowledge, existing studies have only identified the nature of uncertainty based on the frequency in a particular discipline, and they did not take into consideration of the flow of time. Therefore, in this study, we identify and analyze the uncertainty words that indicate uncertainty in the scientific literature and investigate the stream of knowledge. We examine the pattern of biomedical knowledge such as representative entity pairs, predicate types, and entities over time. We also perform the significance testing using linear regression analysis. Seven pairs out of 17 entity pairs show the significant decrease pattern statistically and all 10 representative predicates decrease significantly over time. We analyze the relative importance of representative entities by year and identify entities that display a significant rising and falling pattern.

Systematic Review and Meta-Analysis of Antibiotic-Impregnated Shunt Catheters on Anti-Infective Effect of Hydrocephalus Shunt

  • Zhou, Wen-xiu;Hou, Wen-bo;Zhou, Chao;Yin, Yu-xia;Lu, Shou-tao;Liu, Guang;Fang, Yi;Li, Jian-wen;Wang, Yan;Liu, Ai-hua;Zhang, Hai-jun
    • Journal of Korean Neurosurgical Society
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    • v.64 no.2
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    • pp.297-308
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    • 2021
  • Objective : Shunt infection is a common complication while treating hydrocephalus. The antibiotic-impregnated shunt catheter (AISC) was designed to reduce shunt infection rate. A meta-analysis was conducted to study the effectiveness of AISCs in reduction of shunt infection in terms of age, follow-up time and high-risk patient population. Methods : This study reviewed literature from three databases including PubMed, EMBASE, and Cochrane Library (from 2000 to March 2019). Clinical studies from controlled trials for shunt operation were included in this analysis. A subgroup analysis was performed based on the patient's age, follow-up time and high-risk population. The fixed effect in RevMan 5.3 software (Cochrane Collaboration) was used for this meta-analysis. Results : This study included 19 controlled clinical trials including 10105 operations. The analysis demonstrated that AISC could reduce the infection rate in shunt surgery compared to standard shunt catheter (non-AISC) from 8.13% to 4.09% (odds ratio [OR], 0.48; 95% confidence interval [CI], 0.40-0.58; p=0.01; I2=46%). Subgroup analysis of different age groups showed that AISC had significant antimicrobial effects in all three groups (adult, infant, and adolescent). Follow-up time analysis showed that AISC was effective in preventing early shunt infections (within 6 months after implant). AISC is more effective in high-risk population (OR, 0.24;95% CI, 0.14-0.40; p=0.60; I2=0%) than in general patient population. Conclusion : The results of meta-analysis indicated that AISC is an effective method for reducing shunt infection. We recommend that AISC should be considered for use in infants and high-risk groups. For adult patients, the choice for AISC could be determined based on the treatment cost.

Computer-aided design/computer-aided manufacturing of hydroxyapatite scaffolds for bone reconstruction in jawbone atrophy: a systematic review and case report

  • Garagiola, Umberto;Grigolato, Roberto;Soldo, Rossano;Bacchini, Marco;Bassi, Gianluca;Roncucci, Rachele;De Nardi, Sandro
    • Maxillofacial Plastic and Reconstructive Surgery
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    • v.38
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    • pp.2.1-2.9
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    • 2016
  • Background: We reviewed the biological and mechanical properties of porous hydroxyapatite (HA) compared to other synthetic materials. Computer-aided design/computer-aided manufacturing (CAD/CAM) was also evaluated to estimate its efficacy with clinical and radiological assessments. Method: A systematic search of the electronic literature database of the National Library of Medicine (PubMed-MEDLINE) was performed for articles published in English between January 1985 and September 2013. The inclusion criteria were (1) histological evaluation of the biocompatibility and osteoconductivity of porous HA in vivo and in vitro, (2) evaluation of the mechanical properties of HA in relation to its porosity, (3) comparison of the biological and mechanical properties between several biomaterials, and (4) clinical and radiological evaluation of the precision of CAD/CAM techniques. Results: HA had excellent osteoconductivity and biocompatibility in vitro and in vivo compared to other biomaterials. HA grafts are suitable for milling and finishing, depending on the design. In computed tomography, porous HA is a more resorbable and more osteoconductive material than dense HA; however, its strength decreases exponentially with an increase in porosity. Conclusions: Mechanical tests showed that HA scaffolds with pore diameters ranging from 400 to $1200{\mu}m$ had compressive moduli and strength within the range of the human craniofacial trabecular bone. In conclusion, using CAD/CAM techniques for preparing HA scaffolds may increase graft stability and reduce surgical operating time.

A literature study on long term care for the elderly in Korea and Japan (한국과 일본의 노인장기요양보험에 관한 문헌고찰)

  • Kim, Kyung-Min;Kim, Nam-Hee;Lee, Gung-Hwa;Yoon, Hyun-Seo;Park, Hye-Young;Kim, Hye-Jin
    • Journal of Korean society of Dental Hygiene
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    • v.17 no.5
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    • pp.705-719
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    • 2017
  • Objectives: The purpose of this study is to look into the health insurance systems and application in Korea and Japan in order to improve elderly people's quality of life. Their quality of life can be improved by upgrading the long term care systems; and extending treatment and prevention. Methods: This study is to examine long term care systems articles through content analysis in the National Health Insurance Service. Data were collected from the printed Internet and analyzed. Results: A part-time dentist system in elderly care facilities has trouble in taking care of old people's oral health due to both lack of time and operational difficulties. It is urgent to arrange dental experts who can permanently stay in care facilities and to build systems which can be managed periodically and continually. Conclusions: As having staff training for the efficiency and using the manpower in care facilities (care workers), it is necessary to solve the unequal medical service in oral health care for the elderly in Korea.

Preoperative Radiological Parameters to Predict Clinical and Radiological Outcomes after Laminoplasty

  • Lee, Su Hun;Son, Dong Wuk;Shin, Jun Jae;Ha, Yoon;Song, Geun Sung;Lee, Jun Seok;Lee, Sang Weon
    • Journal of Korean Neurosurgical Society
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    • v.64 no.5
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    • pp.677-692
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    • 2021
  • Many studies have focused on pre-operative sagittal alignment parameters which could predict poor clinical or radiological outcomes after laminoplasty. However, the influx of too many new factors causes confusion. This study reviewed sagittal alignment parameters, predictive of clinical or radiological outcomes, in the literature. Preoperative kyphotic alignment was initially proposed as a predictor of clinical outcomes. The clinical significance of the K-line and K-line variants also has been studied. Sagittal vertical axis, T1 slope (T1s), T1s-cervical lordosis (CL), anterolisthesis, local kyphosis, the longitudinal distance index, and range of motion were proposed to have relationships with clinical outcomes. The relationship between loss of cervical lordosis (LCL) and T1s has been widely studied, but controversy remains. Extension function, the ratio of CL to T1s (CL/T1s), and Sharma classification were recently proposed as LCL predictors. In predicting postoperative kyphosis, T1s cannot predict postoperative kyphosis, but a low CL/T1s ratio was associated with postoperative kyphosis.

Multiple intraosseous cervical pneumatocysts: A case report of a rare incidental finding on cone-beam computed tomography

  • Jadhav, Aniket B.;Sarah, Sangeetha Gajendran;Cederberg, Robert;Wagh, Aditya;Kiat-amnuay, Sudarat
    • Imaging Science in Dentistry
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    • v.48 no.3
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    • pp.223-226
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    • 2018
  • This report presents a case of cervical pneumatocysts as an incidental finding on cone-beam computed tomography. Pneumatocysts are gas-containing lesions of unknown etiology. They usually present in the ilium or sacrum, adjacent to the sacroiliac joint. In the literature, 21 case reports have described cervical pneumatocysts. Cervical pneumatocysts should be differentiated from other lesions, such as osteomyelitis, osteonecrosis, and neoplasms, as well as post-traumatic and post-surgical cases. Computed tomography, cone-beam computed tomography, and magnetic resonance imaging are appropriate tools to diagnose cervical pneumatocysts.

Electret-based microgenerators under sinusoidal excitations: an analytical modeling

  • Nguyen, Cuong C.;Ranasinghe, Damith C.;Al-Sarawi, Said F.
    • Smart Structures and Systems
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    • v.21 no.3
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    • pp.335-347
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    • 2018
  • The fast-growing number of mobile and wearable applications has driven several innovations in small-scale electret-based energy harvesting due to the compatibility with standard microfabrication processes and the ability to generate electrical energy from ambient vibrations. However, the current modeling methods used to design these small scale transducers or microgenerators are applicable only for constant-speed rotations and small sinusoidal translations, while in practice, large amplitude sinusoidal vibrations can happen. Therefore, in this paper, we formulate an analytical model for electret-based microgenerators under general sinusoidal excitations. The proposed model is validated using finite element modeling combined with numerical simulation approaches presented in the literature. The new model demonstrates a good agreement in estimating both the output voltage and power of the microgenerator. This new model provides useful insights into the microgenerator operating mechanism and design trade-offs, and therefore, can be utilized in the design and performance optimization of these small structures.

Control of Encapsulation Efficiency and Initial Burst in Polymeric Microparticle Systems

  • Yeo, Yeon;Park, Ki-Nam
    • Archives of Pharmacal Research
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    • v.27 no.1
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    • pp.1-12
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    • 2004
  • Initial burst is one of the major challenges in protein-encapsulated microparticle systems. Since protein release during the initial stage depends mostly on the diffusional escape of the protein, major approaches to prevent the initial burst have focused on efficient encapsulation of the protein within the microparticles. For this reason, control of encapsulation efficiency and the extent of initial burst are based on common formulation parameters. The present article provides a literature review of the formulation parameters that are known to influence the two properties in the emulsion-solvent evaporation/extraction method. Physical and chemical properties of encapsulating polymers, solvent systems, polymer-drug interactions, and properties of the continuous phase are some of the influential variables. Most parameters affect encapsulation efficiency and initial burst by modifying solidification rate of the dispersed phase. In order to prevent many unfavorable events such as pore formation, drug loss, and drug migration that occur while the dispersed phase is in the semi-solid state, it is important to understand and optimize these variables.

Femoral Periprosthetic Fractures after Total Knee Arthroplasty: New Surgically Oriented Classification with a Review of Current Treatments

  • Rhee, Seung Joon;Cho, Jae Young;Choi, Yoon Young;Sawaguchi, Takeshi;Suh, Jeung Tak
    • Knee surgery & related research
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    • v.30 no.4
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    • pp.284-292
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    • 2018
  • Purpose: As the number of total knee arthroplasties (TKAs) increases, the incidence of femoral periprosthetic fractures after TKA is also increasing. This review aimed to suggest a new surgically oriented classification system for femoral periprosthetic fractures. Methods: We investigated the classifications, and current treatment trends for femoral periprosthetic fractures after TKA by means of a thorough review of the relevant literature. Results: Numerous studies reported good results of surgical treatment with modern fixatives including locking compression plates and retrograde intramedullary nails. However, few classifications of femoral periprosthetic fractures reflect the recent developments in surgical treatment. Conclusions: We recommend that surgical management be considered the first-line treatment for femoral periprosthetic fractures after TKA. Our new classification will help in deciding the surgical treatment option for femoral periprosthetic fractures after TKA.