• Title/Summary/Keyword: biological information processing

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A New Image Processing Method for Digital Chest Radiographs based on Human Visual System (인간의 시각특성에 의거한 디지털 흉부 x-선 영상의 처리 기법)

  • Kim, Jong-Hyo;Park, Kwang-Suk;Min, Byoung-Goo;Lim, Jung-Gi;Han, Man-Cheong;Lee, Choong-Woong
    • Proceedings of the KOSOMBE Conference
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    • v.1990 no.11
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    • pp.42-47
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    • 1990
  • In this paper, a new adaptive image processing method based on human visual system has been presented. The basic idea behind the proposed method is to improve the efficiency of the information transfer channel regionally by manipulating the displayed image in order to compensate the regional inefficiency of the information transfer channel. The proposed method consists of two parts; the first part reallocates pixel values corresponding to high X-ray attenuation to that of more intense X-ray exposure by multiplying the pixel values with the local adaptive multiplcation factor, and the second part adjusts the pixel values of dark area of displayed image such as overexposed lung area to be more bright. The processed image with the proposed method shows significantly increased visibility of mediastinal and subdiaphramatic area, and also the lung area of over exposed case without any artifact.

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Treatment Planning in Smart Medical: A Sustainable Strategy

  • Hao, Fei;Park, Doo-Soon;Woo, Sang Yeon;Min, Se Dong;Park, Sewon
    • Journal of Information Processing Systems
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    • v.12 no.4
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    • pp.711-723
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    • 2016
  • With the rapid development of both ubiquitous computing and the mobile internet, big data technology is gradually penetrating into various applications, such as smart traffic, smart city, and smart medical. In particular, smart medical, which is one core part of a smart city, is changing the medical structure. Specifically, it is improving treatment planning for various diseases. Since multiple treatment plans generated from smart medical have their own unique treatment costs, pollution effects, side-effects for patients, and so on, determining a sustainable strategy for treatment planning is becoming very critical in smart medical. From the sustainable point of view, this paper first presents a three-dimensional evaluation model for representing the raw medical data and then proposes a sustainable strategy for treatment planning based on the representation model. Finally, a case study on treatment planning for the group of "computer autism" patients is then presented for demonstrating the feasibility and usability of the proposed strategy.

Development of web-based system for miRNA and mRNA integrated analysis (miRNA 와 mRNA 통합 분석을 위한 웹 기반 시스템 개발)

  • Kim, Da-Yeon;Ko, Younhee
    • Proceedings of the Korea Information Processing Society Conference
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    • 2022.11a
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    • pp.690-692
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    • 2022
  • 기존의 질병 관련 연구들은 대부분 유의미하게 변화되는 유전자들을 찾아내고(Differentially Expressed Genes, DEGs), 이들이 연관된 생물학적 패스웨이(biological pathway)를 찾아내는 방향으로 이루어졌다. 더불어 miRNA(microRNA)가 많은 mRNA 의 발현을 조절하며, 실제 면역, 대사 및 세포 사멸을 포함한 여러 필수 생리학적 및 질병에 매우 중요한 역할을 한다고 밝혀지며, 바이오 마커로써의 miRNA 를 찾아내고자 하는 연구가 활발히 진행되기 시작하였다. 하지만 mRNA 나 miRNA 의 독립적인 연구만으로는 명확한 질병과의 연관성이나 기능을 이해하기에는 어려움이 있다. 따라서 본 연구에서는 질병 상태에서 유의미하게 변화되는 miRNA 와 이러한 miRNA 에 의해 조절되는 mRNA 를 함께 고려하여 분석함으로써, 실제 질병의 발병 원인이 되는 생물학적 패스웨이나 메커니즘을 밝히고자 하였다. 또한, miRNA 와 mRNA 의 연관성을 찾기 위해, PPI(protein-protein interaction) 네트워크에 기반을 둔 RWR(Random Walk with Restart Algorithm)를 적용하여, 직접적 연관성뿐 아니라, 유전자 간의 숨겨진 간접적인 패스웨이를 고려하여 분석하기 위한 웹 기반 시스템을 개발하였다. 이 시스템은 mRNA-miRNA 를 함께 고려한 통합 분석을 통해 숨겨진 질병의 메커니즘을 이해하고 치료 방법을 찾아내는 데 크게 공헌할 것이다.

Development and Evaluation of System for 3D Visualization Model of Biological Objects (3차원 생물체 가시화 모델 구축장치 개발 및 성능평가)

  • Hwang, H.;Choi, T. H.;Kim, C. H.;Lee, S. H.
    • Journal of Biosystems Engineering
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    • v.26 no.6
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    • pp.545-552
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    • 2001
  • Nondestructive methods such as ultrasonic and magnetic resonance imaging systems have many advantages but still much expensive. And they do not give exact color information and may miss some details. If it is allowed to destruct a biological object to obtain interior and exterior informations, 3D image visualization model from a series of sliced sectional images gives more useful information with relatively low cost. In this paper, a PC based automatic 3D visualization system is presented. The system is composed of three modules. The first module is the handling and image acquisition module. The handling module feeds and slices a cylindrical shape paraffin, which holds a biological object inside the paraffin. And the paraffin is kept being solid by cooling while being handled. The image acquisition modulo captures the sectional image of the object merged into the paraffin consecutively. The second one is the system control and interface module, which controls actuators for feeding, slicing, and image capturing. And the last one is the image processing and visualization module, which processes a series of acquired sectional images and generates a 3D volumetric model. To verify the condition for the uniform slicing, normal directional forces of the cutting edge according to the various cutting angles were measured using a strain gauge and the amount of the sliced chips were weighed and analyzed. Once the 3D model was constructed on the computer, user could manipulate it with various transformation methods such as translation, rotation, and scaling including arbitrary sectional view.

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Estimation of Substring Selectivity in Biological Sequence Database (생물학 서열 데이타베이스에서 부분 문자열의 선적도 추정)

  • 배진욱;이석호
    • Journal of KIISE:Databases
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    • v.30 no.2
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    • pp.168-175
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    • 2003
  • Until now, substring selectivities have been estimated by two steps. First step is to build up a count-suffix tree, which has statistical information about substrings, and second step is to estimate substring selectivity using it. However, it's actually impossible to build up a count-suffix tree from biological sequences because their lengths are too long. So, this paper proposes a novel data structure, count q-gram tree, consisting of fixed length substrings. The Count q-gram tree retains the exact counts of all substrings whose lengths are equal to or less than q and this tree is generated in 0(N) time and in site not subject to total length of all sequences, N. This paper also presents an estimation technique, k-MO. k-MO can choose overlapping length of splitted substrings from a query string, and this choice will affect accuracy of selectivity and query processing time. Experiments show k-MO can estimate very accurately.

Development of Integrated Retrieval System of the Biology Sequence Database Using Web Service (웹 서비스를 이용한 바이오 서열 정보 데이터베이스 및 통합 검색 시스템 개발)

  • Lee, Su-Jung;Yong, Hwan-Seung
    • The KIPS Transactions:PartD
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    • v.11D no.4
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    • pp.755-764
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    • 2004
  • Recently, the rapid development of biotechnology brings the explosion of biological data and biological data host. Moreover, these data are highly distributed and heterogeneous, reflecting the distribution and heterogeneity of the Molecular Biology research community. As a consequence, the integration and interoperability of molecular biology databases are issue of considerable importance. But, up to now, most of the integrated systems such as link based system, data warehouse based system have many problems which are keeping the data up to date when the schema and data of the data source are changed. For this reason, the integrated system using web service technology that allow biological data to be fully exploited have been proposed. In this paper, we built the integrated system if the bio sequence information bated on the web service technology. The developed system allows users to get data with many format such as BSML, GenBank, Fasta to traverse disparate data resources. Also, it has better retrieval performance because the retrieval modules of the external database proceed in parallel.

Researches of the Real-time Medical Imaging Precessing Board using ASIC architecture (ASIC을 이용한 고속의료영상처리보드의 개발을 위한 기초연구)

  • Seo, J.H.;Park, H.M.;Ha, T.H.;Nam, S.H.
    • Proceedings of the KOSOMBE Conference
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    • v.1998 no.11
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    • pp.299-300
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    • 1998
  • Recently the development of medical modality like as MRI, 3D US, DR etc is very active. Therefore it is more required not only the enhancement of quality in medical service but the improvement of medical system based on quantization, minimization, and optimization of high speed. Especially, as the changing into the digital modality system, it gets to start using ASIC(Application Specific Integrated Circuit) to realize one board system. It requires the implementation of hardware debugging and effective speedy algorithm with more speed and accuracy in order to support and replace existing device. If objected image could be linked to high speed process board with special interface and pre-processed using FPGA, it can be used in real time image processing and protocol of HIS(Hospital Information System). This study can support the basic circuit design of medical image board which is able to realize image processing basically using digitalized medical image, and to interface between existing device and image board containing image processing algorithm.

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Context Awareness Using Wireless Biosignal Processing (무선 생체신호 처리를 이용한 상황인식)

  • Lee Sang-Bock;An Byung-Ju;Lee Sanyol;Lee Jun-Haeng
    • Journal of the Korea Society of Computer and Information
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    • v.10 no.6 s.38
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    • pp.117-126
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    • 2005
  • In this paper, it was suggested method to recognize the motion of a person(lying, sitting, walking, running) using fuzzy inference and wireless biologic signal processing system. These are to Perceive the motion of the person. Furthermore, the information of motion is indispensable parameter for Context Awareness (CA). In the present study, ADXL 202JE accelerometer sensor was used to measure for checking the continuance motion, biological quantify of motion, and motion pattern of a Person. The measured data was transmitted to CA server by Radio Frequency(RF). From the present result, we confirmed that it is difficult to decide the motion of walking and running with only the magnitude of the Longitudinal Accelerometer Average Value(LAAV) and moreover the covariance of LAAV in any block is very useful for CA of walking and running.

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Development of a Smart Oriental Medical System Using Security Functions

  • Hong, YouSik;Yoon, Eun-Jun;Heo, Nojeong;Kim, Eun-Ju;Bae, Youngchul
    • International Journal of Fuzzy Logic and Intelligent Systems
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    • v.14 no.4
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    • pp.268-275
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    • 2014
  • In future, hospitals are expected to automatically issue remote transcriptions. Many general hospitals are planning to encrypt their medical database to secure personal information as mandated by law. The electronic medical record system, picture archiving communication system, and the clinical data warehouse, amongst others, are the preferred targets for which stronger security is planned. In the near future, medical systems can be assumed to be automated and connected to remote locations, such as rural areas, and islands. Connecting patients who are in remote locations to medical complexes that are usually based in larger cities requires not only automatic processing, but also a certain amount of security in terms of medical data that is of a sensitive and critical nature. Unauthorized access to patients' transcription data could result in the data being modified, with possible lethal results. Hence, personal and sensitive data on telemedicine and medical information systems should be encrypted to protect patients from these risks. Login passwords, personal identification information, and biological information should similarly be protected in a systematic way. This paper proposes the use of electronic acupuncture with a built-in multi-pad, which has the advantage of being able to establish a patient's physical condition, while simultaneously treating the patient with acupuncture. This system implements a sensing pad, amplifier, a small signal drive circuit, and a digital signal processing system, while the use of a built-in fuzzy technique and a control algorithm have been proposed for performing analyses.

Design for the Remote ECG Diagnosis System using LAN and MODEM (LAN 과 MODEM을 이용한 ECG 원격 진단 시스템 구현)

  • Ahn, S.H.;Yi, Y.
    • Proceedings of the KOSOMBE Conference
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    • v.1997 no.05
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    • pp.171-175
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    • 1997
  • We have developed a remote diagnosis system using the LAN and MODEM which enables a routine check for a patient remotely. We used $LabVIEW^{TM}$ as the programing development tool and DAQ (Data Aquisition) board from National Instrument for data aquisition. The LAN card and MODEM are used for the transmission of patient's data. A patient data are aquired by DAQ board and signal processing is done by $LabVIEW^{TM}$, which is a graphical prgamming language. Two methods for the data of transmission. One is the Client-Server model using TCP/IP (Transmission Control Protocol / Internet Address) in the LAN (Local Area Network) Another is using MODEM to transmit the measured data from a patient. In this case, the data transmission is accomplished by the FTP (File Transfer Protocol).

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