• Title/Summary/Keyword: binding capacities

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Screening and Development of DNA Aptamers Specific to Several Oral Pathogens

  • Park, Jung-Pyo;Shin, Hye Joo;Park, Suk-Gyun;Oh, Hee-Kyun;Choi, Choong-Ho;Park, Hong-Ju;Kook, Min-Suk;Ohk, Seung-Ho
    • Journal of Microbiology and Biotechnology
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    • v.25 no.3
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    • pp.393-398
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    • 2015
  • Aptamers are composed of single-stranded oilgonucleotides that can selectively bind desired molecules. It has been reported that RNA or DNA could act as not only a genetic messenger but also a catalyst in metabolic pathways. RNA aptamers (average sizes 40-50 bp) are smaller than antibodies and have strong binding capacities to target molecules, similar to antigenantibody interactions. Once an aptamer was selected, it can be readily produced in large quantities at low cost. The objectives of this study are to screen and develop aptamers specific to oral pathogens such as Porphyromonas gingivalis, Treponema denticola, and Streptococcus mutans. The bacterial cell pellet was fixed with formaldehyde as a target molecule for the screening of aptamers. The SELEX method was used for the screening of aptamers and a modified western blot analysis was used to verify their specificities. Through SELEX, 40 kinds of aptamers were selected and the specificity of the aptamers to the bacterial cells was confirmed by modified western blot analysis. Through the SELEX method, 40 aptamers that specifically bind to oral pathogens were screened and isolated. The aptamers showed possibility as effective candidates for the detection agents of oral infections.

Comparison on Physicochemical Properties of Korean Kidney Bean Sediment According to Classification (품종에 따른 강낭콩 앙금의 이화학적 성질)

  • 조은자;박선희
    • Korean journal of food and cookery science
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    • v.13 no.5
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    • pp.585-591
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    • 1997
  • The proximate composition and physicochemical properties of three cultivars of Korean kidney bean sediments, Pink (PKB), Red (RKD) and White (WKB) were compared. No significant differences in the proximate composition and calorie were noticed among three samples. Sediment granule was oval/round and rough in all samples. The amylograms showed no peak and continuous increase of viscosity during heating. The water-binding capacities of the sediments were 322.4∼355.0%. The swelling power and solubility were 5.93∼6.68% and 3.76∼5.28%, respectively. The percent transmittances of the sediment suspension decreased linearly from 50$^{\circ}$∼75$^{\circ}C$. The gelatinization temperature and gelatinization enthalpy determined by DSC (Differential Scanning Caloriemeter) were much lower than those of starches.

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Effect of L-carnitine on sperm quality during liquid storage of boar semen

  • Yang, Kang;Wang, Na;Guo, Hai-Tao;Wang, Jing-Ran;Sun, Huan-Huan;Sun, Liang-Zhen;Yue, Shun-Li;Zhou, Jia-Bo
    • Asian-Australasian Journal of Animal Sciences
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    • v.33 no.11
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    • pp.1763-1769
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    • 2020
  • Objective: This study was conducted to investigate the effect of L-carnitine on the pig semen characteristics during storage. Methods: Spermatozoa samples were examined for spermatozoa quality and then randomly divided into 5 groups: 0 (control), 12.5, 25, 50, and 100 mM L-carnitine. Sperm motility, plasma membrane integrity and antioxidant parameters (total reactive oxygen species, total antioxidant capacity, and malondialdehyde) were evaluated after 0, 3, 5, and 10 day cooled-storage at 17℃. Moreover, ATP content, mitochondria activity as well as sperm-binding and in vitro fertilizing ability of preserved boar sperm were also investigated. Results: Supplementation with 50 mM L-carnitine could effectively maintain boar sperm quality parameters such as sperm motility and membrane integrity. Besides, we found that L-carnitine had positive effects on boar sperm quality mainly through improving antioxidant capacities and enhancing ATP content and mitochondria activity. Interestingly, by assessing the effect of L-carnitine on sperm fertility and developmental potential, we discovered that the extender containing L-carnitine could improve sperm quality and increase the number of sperms bounding to zona pellucida, without improving in vitro fertility and development potential. Conclusion: These findings suggested that the proper addition of L-carnitine to the semen extender improved boar sperm quality during liquid storage at 17℃.

Expression Pattern of Major Heat Shock Protein Genes in Diploid and Triploid Abalone Haliotis discus hannai Juveniles (이배체 및 삼배체 전복(Haliotis discus hannai) 치패에서 주요 열충격 단백질 유전자들(heat shock protein genes)의 발현 특징)

  • Park, Choul Ji;Kim, Eun Joeng;Nam, Yoon Kwon
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.53 no.4
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    • pp.515-523
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    • 2020
  • Basal and heat shock-induced mRNA expression patterns of major heat shock protein (HSP) genes, including those encoding heat shock protein (HSP) 90, HSP70, HSP70-12A, heat shock inducible protein 70 (HSIP70), heat shock binding protein 1 (HSPBP1), HSP60, and HSP40 were examined in the gill and hepatopancreas of 1-year-old diploid and triploid abalone Haliotis discus hannai juveniles. Under non-stimulated conditions at 19℃, triploid abalones displayed, in general, higher mRNA levels of various HSPs (HSP70, HSIP70, HSPBP1, HSP70-12A, and HSP60 in the gill and HSIP70, HSPBP1, and HSP60 in the hepatopancreas) than did communally cultured diploids. Conversely, only the hepatopancreatic expression of HSP70-12A was higher in diploids than in triploids. However, the fold changes in gene expression in response to an acute thermal challenge (elevation from 19 to 30℃) were generally greater in diploids than in triploids, such that the difference in basal expression was diminished, weakened, or even reversed after heat shock treatment. However, unlike other HSP genes, the basal expression of HSP60 (higher in 3N) was more pronounced after heat shock treatment. Collectively, the results of this study suggest that triploid abalones have different capacities for not only basal expression but also the heat-induced expression of HSPs in an HSP member-dependent manner.

DDX Framework Design and Implementation Usable in the Flex Platform (Flex 플랫폼 상에서 사용가능한 DDX 프레임워크 설계 및 구현)

  • Kim, Yang-Hoon;Jeong, Gu-Beom;Yoo, Gab-Sang;Kim, Guk-Boh
    • Journal of Internet Computing and Services
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    • v.11 no.4
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    • pp.119-128
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    • 2010
  • Computing environment in these days aim for user-oriented development called RIA (Rich Internet Application). As a representative development method of RIA, Flex Framework overcomes the weaknesses of the Mainframe and C/S (Client/Server). However, the issues, such as, difficulties in memory management, complexity of the binding structure and large capacities of the compile outputs are left to be solved. The purpose of this paper is to implement the framework which enables the fast and accurate development of user-oriented web application on the Flex platform. DDX (Dynamic Data eXchange) framework proposes standardized and efficient development environment in a Flex platform. And by using scalability-prepared library that is applicable for various job areas, the framework enhances the performance, increase development productivity and help construct stable system.

The Molecular Weight Distribution Pattern in Oxidized Corn Starch (산화에 따른 옥수수 전분의 분자량 분포 양상)

  • 한진숙;안승요
    • Korean journal of food and cookery science
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    • v.18 no.2
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    • pp.200-205
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    • 2002
  • Corn starch was modified by the oxidation with sodium hypochlorite(NaOCl) and the changes in the distribution of molecular weight were examined. Corn starch was oxidized with 0.25, 0.5, 0.75, 1.0, and 1.5% active Cl/g of starch at pH 7.0 and 25$^{\circ}C$ for 10 min. Oxidation of corn starch caused a change in the molecular weight distribution of amylopectin. The fraction of highest molecular weight in native starch decreased gradually and the fraction of lower molecular weight increased with increasing oxidation. Also, λ$\sub$max/ and iodine binding capacities of oxidized starches decreased and the soluble carbohydrate content increased by oxidation. The differential scanning calorimetric results of oxidized starches showed that the temperature and enthalpies of gelatinization were not changed by oxidation; however, the more the starch was oxidized, the greater the extent of retrogradation.

Physicochemical and Structural Characteristics of Waxy Rice Flours and Starches during Soaking Time (수침기간에 따른 찹쌀가루와 찹쌀전분의 이화학적 및 구조적 특성)

  • Park, Sara;No, Junhee;Shin, Malshick
    • Journal of the East Asian Society of Dietary Life
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    • v.26 no.5
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    • pp.457-465
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    • 2016
  • Effects of soaking time on the physicochemical and structural characteristics of waxy rice flours and starches purified from flours using the alkaline steeping method were investigated. Korean cultivar Sinseonchal waxy rice was washed and soaked in tap water (1:2 w/w) and stored at room temperature for 15 days. On each day of soaking for 0, 1,2 3, 5, 10, and 15 days, pH of soaking water was measured and rice grains were dried, ground, and passed through 100 mesh sieve. The pH was reduced to 3.90 by day 5 and increased to 4.60 by day 15. The protein and ash contents, swelling powers and solubilities of flours and starches decreased with increasing soaking time. The water-binding capacities increased while trends were not similar to soaking time. The flour particle size distribution ranged from two to four peaks with increasing soaking times. Starch granule size decreased with increasing soaking time. The peak, trough, and final viscosities of flours and starches showed similar trends until 10 days and 15 days, respectively. The starches presented higher viscosities than the flours. The branch chain length distributions of amylopectin of starches showed an increaseed DP6~12 portion and decreased DP13~24 portion with increasing soaking time of waxy rice grains.

A Study on Plans to Construct Green Port around Port environmental regulations (항만환경 규제에 따른 Green Port 구축방안)

  • Lim, Jong-Sup
    • Journal of Korea Port Economic Association
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    • v.26 no.2
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    • pp.99-118
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    • 2010
  • This objective of this study is to thoroughly analyze the policies of international organizations and major advanced countries relevant to the realization of Green port To construct Green ports, there first must be competition to build such ports in sustainable, fixed quantities. Second, there is a great need for cooperation and support networks made binding by mutual agreements on ship recycling. Third, there is a need for scientific research on responses to changes in environmental regulations and on environmental issues. Today, the majority of the world's ports use gasoline or electric energy, and improving capacities for self-sufficiency through development of new and renewable energy is judged to be a pressing task. The conditions for an eco-friendly port is that it must be an important center for economic and industrial activity, and valuable as a site where people live and work, with residences and work places existing in close proximity.

Properties of Amaranth Flour Processed by Various Methods (다양한 방법으로 가공처리한 아마란스 가루의 특성)

  • Choi, Cha-Ran;Kim, Sung-Ran;Lee, Jae-Hak;Shin, Mal-Shick
    • Korean Journal of Food Science and Technology
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    • v.36 no.2
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    • pp.262-267
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    • 2004
  • Processed foods were developed using amaranth starch and flours. Amaranth seeds were untreated (UT), defatted (DF), germinated (GM), roasted (RT), popped (POP), and extruded (EX1 and EX2). Amaranth flours showed A-type pattern on X-ray diffractograms, while crystallinity was not observed in POP, EX1, and EX2. POP and EX1 showed highest (740.3%) and lowest (38.5%) water-binding capacities, respectively. Transmittances of RT, POP, EX1, and EX2 flour suspensions were higher than those of others. Transmittance of amaranth starch and flours differed with processing methods. RT, POP, EX1, and EX2 showed higher transmittance at $60^{\circ}C$. Initial pasting temperature of amaranth flours by RVA were $68.1-73.0^{\circ}C$, and peak viscosities of GM and RT were 31.6 and 401.1 RVU, respectively. Melting endotherms of POP, EX1, and EX2 were not observed in DSC thermograms.

Upregulation of Dendritic Arborization by N-acetyl-D-Glucosamine Kinase Is Not Dependent on Its Kinase Activity

  • Lee, HyunSook;Dutta, Samikshan;Moon, Il Soo
    • Molecules and Cells
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    • v.37 no.4
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    • pp.322-329
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    • 2014
  • N-acetylglucosamine kinase (GlcNAc kinase or NAGK; EC 2.7.1.59) is highly expressed and plays a critical role in the development of dendrites in brain neurons. In this study, the authors conducted structure-function analysis to verify the previously proposed 3D model structure of GlcNAc/ATP-bound NAGK. Three point NAGK mutants with different substrate binding capacities and reaction velocities were produced. Wild-type (WT) NAGK showed strong substrate preference for GlcNAc. Conversion of Cys143, which does not make direct hydrogen bonds with GlcNAc, to Ser (i.e., C143S) had the least affect on the enzymatic activity of NAGK. Conversion of Asn36, which plays a role in domain closure by making a hydrogen bond with GlcNAc, to Ala (i.e., N36A) mildly reduced NAGK enzyme activity. Conversion of Asp107, which makes hydrogen bonds with GlcNAc and would act as a proton acceptor during nucleophilic attack on the ${\gamma}$-phosphate of ATP, to Ala (i.e., D107A), caused a total loss in enzyme activity. The overexpression of EGFP-tagged WT or any of the mutant NAGKs in rat hippocampal neurons (DIV 5-9) increased dendritic architectural complexity. Finally, the overexpression of the small, but not of the large, domain of NAGK resulted in dendrite degeneration. Our data show the effect of structure on the functional aspects of NAGK, and in particular, that the small domain of NAGK, and not its NAGK kinase activity, plays a critical role in the upregulation of dendritogenesis.