• Title/Summary/Keyword: batch processing

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Endoplasmic Reticulum Signaling for Recombinant-protein Production (재조합 단백질 생산을 위한 소포체 신호전달)

  • Goo, Tae-Won;Yun, Eun-Young;Kang, Seok-Woo;Kwon, Ki-Sang;Kwon, O-Yu
    • Journal of Life Science
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    • v.17 no.6 s.86
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    • pp.847-858
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    • 2007
  • The endoplasmic reticulum (ER) is an important intracellular organelle for folding and maturation of newly synthesized transmembrane and secretory proteins. The ER provides stringent quality control systems to ensure that only correctly folded proteins exit the ER and unfolded or misfolded proteins are retained and ultimately degraded. The ER has evolved stress response both signaling pathways the unfolded protein response (UPR) to cope with the accmulation of unfolded or misfolded proteins and ER overload response (EOR). Accumulating evidence suggests that, in addition to responsibility for protein processing, ER is also an important signaling compartment and a sensor of cellular stress. In this respect, production of bio-functional recombinant-proteins requires efficient functioning of the ER secretory pathway in host cells. This review briefly summarizes our understanding of the ER signaling developed in the recent years to help of the secretion capacities of recombinant cells.

An Incremental Method Using Sample Split Points for Global Discretization (전역적 범주화를 위한 샘플 분할 포인트를 이용한 점진적 기법)

  • 한경식;이수원
    • Journal of KIISE:Software and Applications
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    • v.31 no.7
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    • pp.849-858
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    • 2004
  • Most of supervised teaming algorithms could be applied after that continuous variables are transformed to categorical ones at the preprocessing stage in order to avoid the difficulty of processing continuous variables. This preprocessing stage is called global discretization, uses the class distribution list called bins. But, when data are large and the range of the variable to be discretized is very large, many sorting and merging should be performed to produce a single bin because most of global discretization methods need a single bin. Also, if new data are added, they have to perform discretization from scratch to construct categories influenced by the data because the existing methods perform discretization in batch mode. This paper proposes a method that extracts sample points and performs discretization from these sample points in order to solve these problems. Because the approach in this paper does not require merging for producing a single bin, it is efficient when large data are needed to be discretized. In this study, an experiment using real and synthetic datasets was made to compare the proposed method with an existing one.

A Spam Filter System Based on Maximum Entropy Model Using Co-training with Spamminess Features and URL Features (스팸성 자질과 URL 자질의 공동 학습을 이용한 최대 엔트로피 기반 스팸메일 필터 시스템)

  • Gong, Mi-Gyoung;Lee, Kyung-Soon
    • The KIPS Transactions:PartB
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    • v.15B no.1
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    • pp.61-68
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    • 2008
  • This paper presents a spam filter system using co-training with spamminess features and URL features based on the maximum entropy model. Spamminess features are the emphasizing patterns or abnormal patterns in spam messages used by spammers to express their intention and to avoid being filtered by the spam filter system. Since spammers use URLs to give the details and make a change to the URL format not to be filtered by the black list, normal and abnormal URLs can be key features to detect the spam messages. Co-training with spamminess features and URL features uses two different features which are independent each other in training. The filter system can learn information from them independently. Experiment results on TREC spam test collection shows that the proposed approach achieves 9.1% improvement and 6.9% improvement in accuracy compared to the base system and bogo filter system, respectively. The result analysis shows that the proposed spamminess features and URL features are helpful. And an experiment result of the co-training shows that two feature sets are useful since the number of training documents are reduced while the accuracy is closed to the batch learning.

Study of Size Optimization for Skirt Structure of Composite Pressure Vessel (복합재 압력용기의 스커트 치수 최적화 설계 연구)

  • Kim, Jun Hwan;Shin, Kwang Bok;Hwang, Tae Kyung
    • Transactions of the Korean Society of Mechanical Engineers A
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    • v.37 no.1
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    • pp.31-37
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    • 2013
  • This study aims to find the optimal skirt dimensions for a composite pressure vessel with a separated dome part. The size optimization for the skirt structure of the composite pressure vessel was conducted using a sub-problem approximation method and batch processing codes programmed using ANSYS Parametric Design Language (APDL). The thickness and length of the skirt part were selected as design variables for the optimum analysis. The objective function and constraints were chosen as the weight and the displacement of the skirt part, respectively. The numerical results showed that the weight of the skirt of a composite pressure vessel with a separated dome part could be reduced by a maximum of 4.38% through size optimization analysis of the skirt structure.

Implement of Smart Phone Application for Website Administration (스마트폰을 이용한 모바일 웹사이트 관리 프로그램 구현)

  • Park, Suhyun;Park, Jaeyang
    • Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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    • 2009.05a
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    • pp.876-879
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    • 2009
  • As performance and feature set of mobile devices are getting better, the scope of things for which they can be used is also getting widened. More than simply browsing information using mobile web, now these devices can interact with users. It requires various features to manage a web site; supporting full-browsing alone is not enough since there are problems such as processing speed, user interface restriction. However, using mobile devices to manage a web site has its own merits since the can be used without restriction of time and location. In this paper, we introduce a mobile web site administration software that provides both online and offline features. It supports CRUD (Create, Read, Update, Delete) operations for news and users. These operations can be executed both offline and online. A user can do most of things offline; It connects to online only when it's absolutely necessary and does those in batch mode.

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Improving Multi-DNN Computational Performance of Embedded Multicore Processors through a Global Queue (글로벌 큐를 통한 임베디드 멀티코어 프로세서의 멀티 DNN 연산 성능 향상)

  • Cho, Ho-jin;Kim, Myung-sun
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.24 no.6
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    • pp.714-721
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    • 2020
  • DNN is expanding its use in embedded systems such as robots and autonomous vehicles. For high recognition accuracy, computational complexity is greatly increased, and multiple DNNs are running aperiodically. Therefore, the ability processing multiple DNNs in embedded environments is a crucial issue. Accordingly, multicore based platforms are being released. However, most DNN models are operated in a batch process, and when multiple DNNs are operated in multicore together, the execution time deviation between each DNN may be large and the end-to-end execution time of the whole DNNs could be long depending on how they are allocated to the cores. In this paper, we solve these problems by providing a framework that decompose each DNN into individual layers and then distribute to multicores through a global queue. As a result of the experiment, the total DNN execution time was reduced by 31%, and when operating multiple identical DNNs, the deviation in execution time was reduced by up to 95.1%.

A Study on Establishment of Connecting Information Conversion Criteria for Mobile Electronic Notification Service of Private Institutions (민간기관 모바일 전자고지서비스를 위한 연계정보 변환기준 수립에 대한 연구)

  • Kim, JongBae
    • The Journal of the Convergence on Culture Technology
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    • v.7 no.4
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    • pp.735-743
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    • 2021
  • The mobile electronic notice service (MENS) is a service that delivers a mobile electronic notice to a smartphone in the person's name through an authorized electronic document intermediary instead of a bill that was delivered by mail using paper. In order to provide the MENS, information is needed to identify the same user between the sending agency and the authorized electronic document relay. In this paper, we propose a standard for safe conversion and utilization of Connecting Information (CI) used as user identification information for MENS. In the proposed method, it is necessary for the requesting institution to send the electronic notice to provide the resident registration number to the identity verification institution and convert it into the CI. In this case, a safe and efficient MENS will be possible by proposing a review standard and processing method to verify the appropriateness of the conversion of CI. By applying the proposed method to the MENS, it can contribute to service activation and reinforcement of user privacy protection.

Introduction and Utilization of Time Series Data Integration Framework with Different Characteristics (서로 다른 특성의 시계열 데이터 통합 프레임워크 제안 및 활용)

  • Jisoo, Hwanga;Jaewon, Moon
    • Journal of Broadcast Engineering
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    • v.27 no.6
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    • pp.872-884
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    • 2022
  • With the development of the IoT industry, different types of time series data are being generated in various industries, and it is evolving into research that reproduces and utilizes it through re-integration. In addition, due to data processing speed and issues of the utilization system in the actual industry, there is a growing tendency to compress the size of data when using time series data and integrate it. However, since the guidelines for integrating time series data are not clear and each characteristic such as data description time interval and time section is different, it is difficult to use it after batch integration. In this paper, two integration methods are proposed based on the integration criteria setting method and the problems that arise during integration of time series data. Based on this, integration framework of a heterogeneous time series data was constructed that is considered the characteristics of time series data, and it was confirmed that different heterogeneous time series data compressed can be used for integration and various machine learning.

Efficiency and Mechanism of Pb(II) Removal from Aqueous Solutions Using Cornus controversa and Quercus mongolica Biomass Waste (층층나무와 신갈나무 폐바이오매스를 활용한 수용액 중 납 제거 효율 및 기작)

  • Choi, Si Young;Jeong, Seok Soon;Yang, Jae E.;Kim, Hyuck Soo;Cho, Jun Hyung
    • Korean Journal of Environmental Agriculture
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    • v.40 no.4
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    • pp.239-247
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    • 2021
  • BACKGROUND: Enormous amounts of the wood biomass wastes have been produced through various wood processing. This study characterizes the surface characteristics of biomass powders of Cornus controversa (CC) and Quercus mongolica (QM) and investigates their removal efficiency and mechanism for Pb (II) in aqueous solution on which to base potential recycling alternative of the wood biomass. METHODS AND RESULTS: Batch experiments were conducted under different conditions of Pb concentrations, temperatures, time and solid/solution ratios. Adsorption isotherm of Pb by CC and QM biomass was explained significantly by the Langmuir model, indicating Pb was likely adsorbed on the monolayer of the surfaces. The adsorption kinetics were fitted significantly to the double first-order model consisting of rapid and slow steps. The respective rate constants (k1) of CC and QM for the rapid adsorption kinetic steps were 0.051 and 0.177 min-1, and most of the sorption reactions proceeded rapidly within 6-20 minutes. The maximum adsorption quantities (qmax) of Pb were 17.25 and 23.47 mg/g for CC and QM, respectively. Thermodynamic parameters revealed that adsorption of Pb on the biomass of CC and QM was a spontaneous endothermic reaction. CONCLUSION(S): Results demonstrate that biomass wastes of CC and QM can be used as Pb adsorbents judging from adsorption isotherm, kinetics, and thermodynamic parameters.

A streamlined pipeline based on HmmUFOtu for microbial community profiling using 16S rRNA amplicon sequencing

  • Hyeonwoo Kim;Jiwon Kim;Ji Won Cho;Kwang-Sung Ahn;Dong-Il Park;Sangsoo Kim
    • Genomics & Informatics
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    • v.21 no.3
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    • pp.40.1-40.11
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    • 2023
  • Microbial community profiling using 16S rRNA amplicon sequencing allows for taxonomic characterization of diverse microorganisms. While amplicon sequence variant (ASV) methods are increasingly favored for their fine-grained resolution of sequence variants, they often discard substantial portions of sequencing reads during quality control, particularly in datasets with large number samples. We present a streamlined pipeline that integrates FastP for read trimming, HmmUFOtu for operational taxonomic units (OTU) clustering, Vsearch for chimera checking, and Kraken2 for taxonomic assignment. To assess the pipeline's performance, we reprocessed two published stool datasets of normal Korean populations: one with 890 and the other with 1,462 independent samples. In the first dataset, HmmUFOtu retained 93.2% of over 104 million read pairs after quality trimming, discarding chimeric or unclassifiable reads, while DADA2, a commonly used ASV method, retained only 44.6% of the reads. Nonetheless, both methods yielded qualitatively similar β-diversity plots. For the second dataset, HmmUFOtu retained 89.2% of read pairs, while DADA2 retained a mere 18.4% of the reads. HmmUFOtu, being a closed-reference clustering method, facilitates merging separately processed datasets, with shared OTUs between the two datasets exhibiting a correlation coefficient of 0.92 in total abundance (log scale). While the first two dimensions of the β-diversity plot exhibited a cohesive mixture of the two datasets, the third dimension revealed the presence of a batch effect. Our comparative evaluation of ASV and OTU methods within this streamlined pipeline provides valuable insights into their performance when processing large-scale microbial 16S rRNA amplicon sequencing data. The strengths of HmmUFOtu and its potential for dataset merging are highlighted.