• 제목/요약/키워드: and variety identification

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Identification of long non-coding RNA-mRNA interactions and genome-wide lncRNA annotation in animal transcriptome profiling

  • Yoon-Been Park;Jun-Mo Kim
    • Journal of Animal Science and Technology
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    • 제65권2호
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    • pp.293-310
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    • 2023
  • Protein-translated mRNA analysis has been extensively used to determine the function of various traits in animals. The non-coding RNA (ncRNA), which was known to be non-functional because it was not encoded as a protein, was re-examined as it was studied to actually function. One of the ncRNAs, long non-coding RNA (lncRNA), is known to have a function of regulating mRNA expression, and its importance is emerging. Therefore, lncRNAs are currently being used to understand the traits of various animals as well as human diseases. However, studies on lncRNA annotation and its functions are still lacking in most animals except humans and mice. lncRNAs have unique characteristics of lncRNAs and interact with mRNA through various mechanisms. In order to make lncRNA annotations in animals in the future, it is essential to understand the characteristics of lncRNAs and the mechanisms by which lncRNAs function. In addition, this will allow lncRNAs to be used for a wider variety of traits in a wider range of animals, and it is expected that integrated analysis using other biological information will be possible.

Genetic Differences and Variation of Ascidians, Halocynthia roretzi von Drasche and H. hilgendorfi Oka Identified by PCR Analysis

  • Yoon, Jong-Man;Kim, Jong-Yeon
    • 한국발생생물학회지:발생과생식
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    • 제15권4호
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    • pp.359-364
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    • 2011
  • The seven selected primers OPA-02, OPA-04, OPA-18, OPD-07, OPD-08, OPD-15 and OPD-16 were used to generate unique shared loci to each species and shared loci by the two species. The hierarchical dendrogram indicates three main branches: cluster 1 (RORETZI 01~RORETZI 11) and cluster 2 (HILGENDORF 12~HILGENDORF 22) from two geographic populations of ascidians, Halocynthia roretzi and H. hilgendorfi. The shortest genetic distance displaying significant molecular difference was between individuals' HILGENDORF no. 14~HILGENDORF no. 19 (genetic distance =0.008). Ultimately, individual no. 02 of the RORETZI ascidian was most distantly related to HILGENDORF no. 21 (genetic distance=0.781). These results demonstrate that the H. roretzi population is genetically different from the H. hilgendorfi population. From what has been said above, the potential of PCR analysis to identify diagnostic markers for the identification of two ascidian populations has been demonstrated. Generally speaking, using a variety of decamer primers, this PCR method has been applied to identify specific markers particular to line, species and geographical population, as well as genetic diversity/polymorphism in diverse species of organisms.

Home Energy Management System for Interconnecting and Sensing of Electric Appliances

  • Cho, Wei-Ting;Lai, Chin-Feng;Huang, Yueh-Min;Lee, Wei-Tsong;Huang, Sing-Wei
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • 제5권7호
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    • pp.1274-1292
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    • 2011
  • Due to the variety of household electric devices and different power consumption habits of consumers at present, general home energy management (HEM) systems suffer from the lack of dynamic identification of various household appliances and a unidirectional information display. This study presented a set of intelligent interconnection network systems for electric appliances, which can measure the power consumption of household appliances through a current sensing device based on OSGi platform. The system establishes the characteristics and categories of related electric appliances, and searches the corresponding cluster data and eliminates noise for recognition functionality and error detection mechanism of electric appliances by applying the clustering algorithm. The system also integrates household appliance control network services so as to control them according to users' power consumption plans or through mobile devices, thus realizing a bidirectional monitoring service. When the system detects an abnormal operating state, it can automatically shut off electric appliances to avoid accidents. In practical tests, the system reached a recognition rate of 95%, and could successfully control general household appliances through the ZigBee network.

계층 분리 알고리즘에 의한 부품 그룹핑 및 셀 구성 (Parts grouping by a hierarchical divisive algorithm and machine cell formation)

  • 이춘식;황학
    • 제어로봇시스템학회:학술대회논문집
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    • 제어로봇시스템학회 1991년도 한국자동제어학술회의논문집(국내학술편); KOEX, Seoul; 22-24 Oct. 1991
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    • pp.589-594
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    • 1991
  • Group Technology (GT) is a technique for identifying and bringing together related or similar components in a production process in order to take advantage of their similarities by making use of, for example, the inherent economies of flow production methods. The process of identification, from large variety and total of components, of the part families requiring similar manufacturing operations and forming the associated groups of machines is referred as 'machine-component grouping'. First part of this paper is devoted to describing a hierarchical divisive algorithm based on graph theory to find the natural part families. The objective is to form components into part families such that the degree of inter-relations is high among components within the same part family and low between components of different part families. Second part of this paper focuses on establishing cell design procedures. The aim is to create cells in which the most expensive and important machines-called key machine - have a reasonably high utilization and the machines should be allocated to minimize the intercell movement of machine loads. To fulfil the above objectives, 0-1 integer programming model is developed and the solution procedures are found. Next an attempt is made to test the feasibility of the proposed method. Several different problems appearing in the literature are chosen and the results air briefly showed.

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Review on Biosensors for Food Safety

  • Kim, Giyoung;Moon, Ji-Hea;Lim, Jongguk;Mo, Changyeun
    • Journal of Biosystems Engineering
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    • 제39권2호
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    • pp.115-121
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    • 2014
  • Background: Frequent outbreaks of foodborne illness have been increased awareness of food safety. CDC estimates that each year roughly 48 million people gets sick, 128,000 are hospitalized and 3,000 die of foodborne diseases in US. In Korea, 6,058 were hospitalized and 266 incidents were reported in 2012. It is required to develop rapid methods to identify hazard substances in food products for protecting and maintaining safety of the public health. However, conventional methods for pathogens detection and identification involve prolonged multiple enrichment steps. Purpose: This review aims to provide information on biosensors to detect pathogens in food products to enhance food safety. Results: Foodborne outbreaks continue to occur and outbreaks from various food sources have increased the need for simple, rapid, and sensitive methods to detect foodborne pathogens. Conventional methods for foodborne pathogens detection require tremendous amount of labor and time. Biosensors have drawn attentions in recent years because of their ability to detect analytes sensitively and rapidly. Principles along with their advantages and disadvantages of a variety of food safety biosensors including fiber optic biosensor, impedimetric biosensor, surface Plasmon resonance biosensor, and nano biosensor were explained. Also, future trends for the food safety biosensors were discussed.

Salicylic Acid and Wounding Induce Defense-Related Proteins in Chinese Cabbage

  • Kim, Hong-Nam;Cha, Jae-Soon;Cho, Tae-Ju;Kim, Hak-Yong
    • Animal cells and systems
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    • 제7권3호
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    • pp.213-219
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    • 2003
  • The response of plants to pathogens and wounding is dependent upon very sensitive perception mechanisms. Although genetic approaches have revealed a variety of resistance genes that activate common defense responses, defense-related proteins are not well characterized in plants. Therefore, we used a proteomic approach to determine which defense-related proteins are induced by salicylic acid (SA) and wounding in Chinese cabbage. We found that SA and wounding induce pathogenesis-related protein 1a (PR1a) at both protein and mRNA levels using proteomics and Northern blot analysis, respectively. This indicates that our proteomic approach is useful for identifying defense-related proteins. We also identified several other proteins that are induced by SA or wounding. Among the seven SA-induced proteins identified, four may be defense-related, including defense-related protein, phospholipase D (PLD), resistance protein RPS2 homolog, and L-ascorbate peroxidase. Out of the six wounding-induced proteins identified, three may be defense-related: heat shock cognate protein 70 (HSC70), polygalacturonase, and peroxidase P7. The precise functions of these proteins in plant defense responses await further study. However, identification of the defense-related proteins described in this study should allow us to better understand the mechanisms and signal transduction pathways involved in defense responses in Chinese cabbage.

건설 프로젝트의 DAT (Data Acquisition Technology) 활용현황 및 개선방향 (Application of DAT (Data Acquisition Technology) in the Construction Projects)

  • 서큰솔;정영수
    • 한국건설관리학회:학술대회논문집
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    • 한국건설관리학회 2008년도 정기학술발표대회 논문집
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    • pp.329-333
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    • 2008
  • 최근 건설공사가 대형화 및 복잡화됨에 따라 건설현장에서의 진행관리 중요성은 점점 더 증대되고 있다. 현재 건설 프로젝트 현장에서는 데이터, 정보 기록 및 분석을 현장관리자가 직접 수작업으로 수행하고 있어 상당한 노력과 시간이 소비되고 있으며, 이는 생산성 저하 등 문제점을 있어 야기하고 있다. 이를 개선하기 위한 방안중의 하나로 첨단 DAT(Data Acquisition Technology) 기술 적용이 시도되고 있으며, 본 연구에서는 이러한 DAT의 포괄적 적용 가능성을 분석함으로써 효율적인 프로젝트 진행관리의 방안을 검토하고자 한다.

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Identification of Novel Bioactive Hexapeptides Against Phytopathogenic Bacteria Through Rapid Screening of a Synthetic Combinatorial Library

  • Choi, Jae-Hyuk;Moon, Eun-Pyo
    • Journal of Microbiology and Biotechnology
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    • 제19권8호
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    • pp.792-802
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    • 2009
  • Antimicrobial peptides (AMPs) are considered to be a promising alternative to conventional antibiotics for future generations. We identified four novel hexapeptides with antimicrobial activity: KCM11 (TWWRWW-$NH_2$), KCM12 (KWRWlW-$NH_2$), KCM21 (KWWWRW-$NH_2$), and KRS22 (WRWFIH-$NH_2$), through positional scanning of a synthetic peptide combinatorial library (PS-SCL). The ability of these peptides to inhibit the growth of a variety of bacteria and unicellular fungi was evaluated. KCM11 and KRS22 preferentially inhibited the normal growth of fungal strains, whereas KCM12 and KCM21 were more active against bacterial strains. Bactericidal activity was addressed in a clear zone assay against phytopathogenic bacteria, including Pectobacterium spp., Xanthomonas spp., Pseudomonas spp., etc. KCM21 showed the highest activity and was effective against a wide range of target organisms. Application of KCM21 with inoculation of Pectobacterium carotovorum subsp. carotovorum on detached cabbage leaves resulted in an immune phenotype or a significant reduction in symptom development, depending on the peptide concentration. Cytotoxicity of the four hexapeptides was evaluated in mouse and human epithelial cell lines using an MTT test. The results revealed a lack of cytotoxic effects.

Exploring the Utility of Partial Cytochrome c Oxidase Subunit 1 for DNA Barcoding of Gobies

  • Jeon, Hyung-Bae;Choi, Seung-Ho;Suk, Ho Young
    • Animal Systematics, Evolution and Diversity
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    • 제28권4호
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    • pp.269-278
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    • 2012
  • Gobiids are hyperdiverse compared with other teleost groups, with about 2,000 species occurring in marine, freshwater, and blackish habitats, and they show a remarkable variety of morphologies and ecology. Testing the effectiveness of DNA barcodes on species that have emerged as a result of radiation remains a major challenge in evolutionary biology. Here, we used the cytochrome c oxidase subunit 1 (COI) sequences from 144 species of gobies and related species to evaluate the performance of distance-based DNA barcoding and to conduct a phylogenetic analysis. The average intra-genus genetic distance was considerably higher than that obtained in previous studies. Additionally, the interspecific divergence at higher taxonomic levels was not significantly different from that at the intragenus level, suggesting that congeneric gobies possess substantial interspecific sequence divergence in their COI gene. However, levels of intragenus divergence varied greatly among genera, and we do not provide sufficient evidence for using COI for cryptic species delimitation. Significantly more nucleotide changes were observed at the third codon position than that at the first and the second codons, revealing that extensive variation in COI reflects synonymous changes and little protein level variation. Despite clear signatures in several genera, the COI sequences did resolve genealogical relationships in the phylogenetic analysis well. Our results support the validity of COI barcoding for gobiid species identification, but the utilization of more gene regions will assist to offer a more robust gobiid species phylogeny.

중.고등학교 여학생의 임신경험에 영향을 주는 개인, 가족요인 탐색 (Individual and Familial Risk Factors Associated with Female Adolescents Pregnancy in South Korea)

  • 홍성애;문선순
    • 보건교육건강증진학회지
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    • 제26권4호
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    • pp.105-116
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    • 2009
  • Objectives: In recent years, pregnancy rate among female adolescents has increased and caused a variety of physical and social problems. Therefore, this study aimed to investigate sexual behavior, delinquent behavior, and pregnancy rate among Korean female adolescents. Methods: In light of the growing interest in adolescent pregnancy, this study conducted a web-based survey, titled "The 2006 Youth Health Risk Behavior Survey." The Korean Center for Disease Control (KCDC) collected questionnaire responses from 34,200 young women. The collected data were analyzed through chi-square test and logistic regression using SPSS Win 14.0 version. Results: This study analyzed main factors, which can predict pregnant experience. The statistic results showed two types of the predicting factors: (1) personal factors: sexual relations after drinking (odds 25.1), Narcotic drug taking (odds 13.0), sexual violence act (odds 7.0), part-time job(odds 2.5), drinking, smoking ; and (2) environmental factors: stepfather(odds 4.2) and natural mother. Conclusion: The influential factor identification for predicting pregnancy rate is important to develop an effective education program for preventing the adolescent pregnancy. The education programs with referring to the identified factors can contribute to reducing the unwilling pregnancy rate of young woman.