• Title/Summary/Keyword: allozyme

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Allozyme Variation of Pinus rigida Mill. in an F1-Hybrid Seed Orchard and Estimation of the Proportion of F1-Hybrid Seeds by Allozyme Analysis (잡종(雜種) 채종원(採種園)에서 리기다소나무의 Allozyme 변이(變異)와 Allozyme 분석(分析)에 의(依)한 잡종종자(雜種種字) 발생률(發生率)의 추정(推定))

  • Chung, Min Sup
    • Journal of Korean Society of Forest Science
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    • v.66 no.1
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    • pp.109-117
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    • 1984
  • Allozyme study for open pollinated seeds of forty nine pitch pine families in an $F_1$-hybrid seed orchard demonstrated that allozyme variants in aspartate aminotransferase(AAT), glutamate dehydrogenase(GDH) and leucine aminopeptidase(LAP) systems are encoded by at Least eight loci; five for AAT, one for GDH and two fur LAP. Allozyme variations showed polymorphisms at seven of the eight loci, except GDH. Average number of alleles examined over six loci were 2.33 and 2.67 for maternal and progeny groups, respectively. Average heterozygosity and genetic diversity computed over six loci were, respectively, 0.235 and 5.409 for maternal tree group, 0.238 and 5.569 for progeny group. The proportion of $F_1$-hybrid seeds estimated by allozyme analysis was 0.77%. The estimated proportion of $F_1$ hybrid seeds by allozyme study is in good agreement with the value 0.73% estimated by morphological study for the proportion of pitch ${\times}$ Loblolly $F_1$ hybrid seedlings at a nursery. Indications for Wahlund effect, high levels of self-fertilization and for non-random matings in the $F_1$ hybrid seed orchard call for cautions in estimating allele frequency changes and mating probabilities for the parental and progeny groups.

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Allozyme Variations in Local Populations of Parafossrulus manchouricus (Gastropoda: Prosobranchia) in Korea (한국산 왜우렁이 집단의 지역적 Allozyme 변이에 관한 연구(I))

  • Chung, Pyung-Rim;Jae-Kyung Chang;Yung-Kyum Ahn
    • The Korean Journal of Ecology
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    • v.11 no.1
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    • pp.37-53
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    • 1988
  • The most medically important snail species of Korea is Parafossarulus manchouricus, a member of the freshwater prosobranch family Bithyniidae. The human parasite that this snail transmits is Clonorchis sinensis, the "Chinese live fluke". On the other hand, this snail has physiological characteristics that reduce the turbidity of freshwater by its filiter feeding activity. However, a few basic studies have been carried out so far. The present studies were attempted to know 1) the possibility of culturing the snails and 2) allozyme variations among 5 local populations of this bithyniid snails. As the results of the studies, P. manchouricus was able to be cultivated in the lavoratory and showed considerable allozyme variations especially in the Chongpyung and Paldaing populations out of those collected from 5 localities in Korea. It is quite suggestive that the endemicity of clonorchiasis might be related to the allozyme variability.

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Phylogenetic Study of Two Problematic Subgenera of Tomoceridae (Insecta : Collembola) from Korea (한국산 가시톡토기 과 (곤충 강: 톡토기 목)의 문제 2아속의 계통분화)

  • 박경화;이병훈
    • Animal Systematics, Evolution and Diversity
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    • v.15 no.1
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    • pp.11-25
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    • 1999
  • Two problematic subgenera of Tomoceridae (Collembola, Insecta) were investigated for their phylogenetic relationships based on morphological characters and allozyme study from three relevant species. Different dendrograms were obtained obtained between morphological and allozyme studies. The morphological data did not give rise to any result distinctive enough to separate the two subgenera whereas the allozyme analysis produced a clear separation by the high genetic distance value. They were consistent, however, whether given rise to by using distance or cladistic methods and also whether character weighting or unweighting approaches employed in the morphological character analysis. As a consequence, it is strongly suggested that any prominent morphological trait might work as a good taxonomical character when supported by a strong genetic divergence as evidenced by allozyme analysis for instance.

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Allozyme Analyses of Bithynia manchourica, B. Misella and B. Kiusiuensis (Gastropoda : Prosobranchia) (Bithynia manchourica, B. misella 및 B. kiusiuensis (복종강 : 전새아강) 3종의 Allozyme 연구)

  • Kim, Jae-Jin;Kim, Sei-Chang
    • The Korean Journal of Malacology
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    • v.6 no.1
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    • pp.11-21
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    • 1990
  • 한국과 일본에서 채집한 Bithynia manchourica, B. misella and kiusiuensis등 3종의 Bithyniidae 과 패류의 allozyme 을 분석한 결과 B. manchourica 가 다른 2종에 비해 유전적 거리가 멀었고(0.246)B. misella와 B. kiusiuensis에서는 유전적 거리가 0.217로 나타났다. 아울러 이들 3종의 GPI주행양상은 채집지에 따른 변이가 심하지 않았고 각 종에 따른 특이한 allele을 가지고 있었다.

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Allozyme Variation and Population Genetic Structure of an Invasive Plant, Ageratina altissima(White Snakeroot), in Seoul

  • Chun, Young-Jin;Lee, Hyun-Woo;Lee, Eun-Ju
    • Animal cells and systems
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    • v.5 no.4
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    • pp.309-312
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    • 2001
  • Allozyme studies have been widely used to estimate genetic variation and to describe genetic structure in natural populations. In many cases, the genetic diversity of recently established populations is generally lower than that of central populations. In addition, the genetic composition of an invasive species is influenced by its History of introduction as well as its ecological characters. Ageratina altissima (L.) R. King & H. Robinson (white snakeroot) is a perennial herb native to the eastern United States and Canada, and is currently receiving much attention for its rapid invasion of the Korean forests. Starch gel electrophoresis was used to assess the genetic variability at 11 putative loci in seven introduced populations of A. altissima in Seoul. Populations of A. altissima maintained lower levels of allozyme diversity (expected heterozygosity = 0.063) than those reported for other taxa with similar ecological traits. The degree of differentiation observed among A. altissima populations was considerably low. It is suggested that the populations were recently established from only a few founders via dispersal by human activities, resulting in the loss of genetic variation.

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Phylogeny of Subgenus Drosophila (Drosophilidae: Drosophila) in Korea by Allozyme and Soluble Protein Analysis (동위효소와 수용성단백질 분석에 의한 한국 초파리아속 10종의 계통)

  • Eun Young Joo;Nam Woo Kim
    • Animal Systematics, Evolution and Diversity
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    • v.19 no.2
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    • pp.217-225
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    • 2003
  • This study was conducted to ascertain interspecific relationships by analyzing allozyme and soluble proteins of ten species in the Drosophila (Drosophila) to form a part of systematic studies of Korean drosophilids. The results of allozyme and TDE analysis showed that D. (D.) curvispina and D (D.) tsigana had the furthest genetic distance. On the other hand, the genetic distance between D (D.) angularis and D (D.) brachynephros was extremely close. And, ten species of the subgenus Drosophila can be divided into the first group of D. (D.) virilis, D. (D.) tsigana and D. (D.) lacertosa , and the second group consisted of four subgroups; the first subgroup clustered D. (D.) angularis and D (D.) brachynephros, the second subgroup clustered D. (D.) unispina and D. (D.) curvispina, the third subgroup of D (D.) takadai and D. (D.) kuntzei and the fourth subgroup of D. (D.) nigromaculata alone.

Genetic Studies of Oenothera odorata Populations in Korea Based on Isozyme Analysis

  • Huh, Hong-Wook
    • Journal of Plant Biology
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    • v.39 no.3
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    • pp.223-229
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    • 1996
  • The genetic variation in Korean evening primorse (Oeothera odorata L.) populations was examiend to estimate the level of allozyme variation within populatons using starch gel electrophoresis. 7 of 13 loci (Adh, Est-1, Est-2, Mdh-2, Pgd-2, Pgm-1, and Idh) revealed (Ps=43.2%) were polymorphic. The mean number of alleles per locus (A) and polymorphic locus (Ap) for populations were 1.64 and 2.46, respectively. The effective number of alleles (Aep) within populations relatively was low ranging from 1.08 to 1.22 with a mean of 1.14. Within populations, the mean number of allele per polymorphic loci (Ap) was 2.46, the mean number of alleles per locus (A) was 1.64, and the mean genetic diversity was 0.093. About 2.7% of the total allozyme diversity resided among populations (Mean GST=0.0274). FIS, a measure of the deviation from random mating within 13 populations, was relative low (mean FIS=0.03636). The indirect estimate of gene flow, based on the mean GST, was high (Nm=8.88). Estimates of gene flow were consistent with low levels of genetic differentiation among populations.

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Determination of Seed Purity in Radish (Raphanus sativus L.) Using Allozyme (알로자임에 의한 무 씨의 순수성 검증)

  • Huh, Man-Kyu
    • Journal of Life Science
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    • v.18 no.7
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    • pp.907-911
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    • 2008
  • Radish (Raphanus sativus L.) is one of very important crop plants in the world. It is very important to determine hybrid seed quality in the production of hybrid Brassica vegetable seeds to avoid unacceptable contamination with self-inbred (sib) seeds. The allozyme for evaluating seed purity in a commercial $F_1-hybrid$ radish cultivar is demonstrated. Three hundred sixty seeds from the male and female harvest were subsequently screened for seed purity using 27 isozyme loci. Especially, F1 hybrids of radish, Per-1 ($aa{\times}bb$), Lap-1 ($aa{\times}bb$), Est-1 ($aa{\times}bb$) were presented clear hybrid bands. Est-1 locus revealed that 15 (8.3%) seeds from the female harvest and 26 (14.4%) seeds from the male harvest were sibs. It maintains higher than average level of genetic diversity compared with their correspondent parents. Shannon's index of phenotypic diversity (I) of hybrids was the highest of all accessions (R. sativus L. cv. Daepeng, R. sativus L. cv. Backza, and their hybrids). The allozyme may lead to a better insight into the hybrid seed purity.

Analysis of Genetic Diversity of Phytophthora infestans in Korea by Using Molecular Markers

  • Zhang Xuan-Zhe;Kim Hwa-Yeong;Kim Byung-Sup
    • Journal of Microbiology and Biotechnology
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    • v.16 no.3
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    • pp.423-430
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    • 2006
  • A total of 367 isolates of Phytophthora infestans was collected from the leaf samples of late blight disease from five provinces in Korea over the three growing seasons of 2002-2004. Of the 367 isolates, 337 isolates were of the A1 mating type, and 30 isolates were of A2 mating type, showing that the majority was A1 mating type. Profiles of Gpi and Pep defined four allozyme genotypes among the total of 367 isolates. All four allozyme genotypes could be distinguished on the basis of Gpi profiles alone, whereas all isolates were homozygous at the Pep locus (100/100). The mitochondrial DNA haplotype of all isolates were the IIa haplotype. Amplification of the genomic DNAs extracted from eight isolates of each mating type by polymerase chain reaction with the selected primer (OPC-5 primer) produced a total of 20 DNA bands, of which 11 bands were polymorphic. According to the RAPD analysis using the OPC-5 primer, 106 isolates including two standard isolates were separated into 8 groups at the similarity level of 92.5%. The RAPD groups were not correlated with the allozyme genotypes and the isolated locations. All of the eight RAPD groups were identified in Gangwon-do, suggesting that Gangwon-do is the center of origin of the P. infestans in Korea. A 600-bp DNA band generated with the OPC-5 primer was specific to A1 mating type isolates, but not detected with A2 mating type, showing that the specific PCR primer can distinguish different mating types in P. infestans.

Genetic Structure of Pinus rigida Mill. in an Expanding Population Originating from a Few Founder Trees (수본(數本)의 양친수(兩親樹)에 의해 전파증식(傳播増殖)중에 있는 리기다소나무 집단(集團)의 유전적(遺傳的) 구조(構造))

  • Chung, Min Sup
    • Journal of Korean Society of Forest Science
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    • v.72 no.1
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    • pp.16-26
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    • 1986
  • Allozyme study on a small pitch pine stand originating and expanded rather rapidly from a few founder trees indicated that the colonization of the pitch pine population was made progressively from the place where the founder trees located to another by moving in cohorts of seeds from a limited number of family or genetically closely related family groups in line with the succeeding generations. This pattern of migration and colonization resulted marked differences in allelic and genotypic frequencies at many of the allozyme loci between the initially colonized subpopulation on the south-facing slope and the lately colonized subpopulation on north-facing slope of a hill. It appeared that gene fixation due to inbreeding and genetic drift occurred at some loci in the pitch pine population or subpopulations. However, even in t 1e inbreeding small pitch pine population or subpopulations, a comparatively large amount of genetic diversity or heterozygosity was maintained due to the high levels of gene recombination at many of the gene loci and natural selections favoring for heterozygotes.

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