• Title/Summary/Keyword: Web-based Visualization

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Integration of the PubAnnotation ecosystem in the development of a web-based search tool for alternative methods

  • Neves, Mariana
    • Genomics & Informatics
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    • v.18 no.2
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    • pp.18.1-18.5
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    • 2020
  • Finding publications that propose alternative methods to animal experiments is an important but time-consuming task since researchers need to perform various queries to literature databases and screen many articles to assess two important aspects: the relevance of the article to the research question, and whether the article's proposed approach qualifies to being an alternative method. We are currently developing a Web application to support finding alternative methods to animal experiments. The current (under development) version of the application utilizes external tools and resources for document processing, and relies on the PubAnnotation ecosystem for annotation querying, annotation storage, dictionary-based tagging of cell lines, and annotation visualization. Currently, our two PubAnnotation repositories for discourse elements contain annotations for more than 110k PubMed documents. Further, we created an annotator for cell lines that contain more than 196k terms from Cellosaurus. Finally, we are experimenting with TextAE for annotation visualization and for user feedback.

Visualization for Integrated Analysis of Multi-Omics Data by Harmful Substances Exposed to Human (인체 유래 환경유해물질 노출에 따른 멀티 오믹스 데이터 통합 분석 가시화 시스템)

  • Shin, Ga-Hee;Hong, Ji-Man;Park, Seo-Woo;Kang, Byeong-Chul;Lee, Bong-Mun
    • Journal of Korea Multimedia Society
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    • v.25 no.2
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    • pp.363-373
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    • 2022
  • Multi-omics data is difficult to interpret due to the heterogeneity of information by the volume of data, the complexity of characteristics of each data, and the diversity of omics platforms. There is not yet a system for interpreting to visualize research data on environmental diseases concerning environmental harmful substances. We provide MEE, a web-based visualization tool, to comprehensively explore the complexity of data due to the interconnected characteristics of high-dimensional data sets according to exposure to various environmental harmful substances. MEE visualizes omics data of correlation between omics data, subjects and samples by keyword searches of meta data, multi-omics data, and harmful substances. MEE has been demonstrated the versatility by two examples. We confirmed the correlation between smoking and asthma with RNA-seq and Methylation-Chip data, it was visualized that genes (P HACTR3, PXDN, QZMB, SOCS3 etc.) significantly related to autoimmune or inflammatory diseases. To visualize the correlation between atopic dermatitis and heavy metals, we selected 32 genes related immune response by integrated analysis of multi-omics data. However, it did not show a significant correlation between mercury in blood and atopic dermatitis. In the future, should continuously collect an appropriate level of multi-omics data in MEE system, will obtain data to analyze environmental substances and diseases.

Visualization of wildfire based on FIRMS API (FIRMS API를 이용한 GIS기반 산불 확산정보의 시각화)

  • Lee, Byung Hyun;Son, Min Woo;Kim, Byung Sik
    • Proceedings of the Korea Water Resources Association Conference
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    • 2022.05a
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    • pp.454-454
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    • 2022
  • Residents near the fire site are more anxious as they rely only on media information and the government's evacuation order due to the lack of information to understand the progress of the wildfire. Therefore, in the event of a wildfire, we try to understand the inconvenience of not being able to know the progress of the fire and solve it. This makes it possible to check the progress of wildfires and the spread of debris using the system interface (API) and weather data of the thermal infrared satellite image data (NASA FIRMS, Fire Information for Resource Management System), and finally, the purpose of this study. The results are provided through the Web including GIS-based visualization to provide decision-making reference information for evacuation in the event of a forest fire from the perspective of residents.

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Visualization of Diagnosed IGES by Java Native Interface (JNI를 이용하여 진단된 IGES의 가시화)

  • 박상호;윤형선;이병훈;김준형;김덕수
    • Journal of Korean Society of Industrial and Systems Engineering
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    • v.26 no.2
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    • pp.23-28
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    • 2003
  • This research explains visualization of diagnostic system of 3D CAD data, IGES (Initial Graphics Exchange Specification), by using JNI(Java Native Interface) to connect between C++ and Java programming. The diagnostic system is to analyze IGES clearly by identifying errors and anomalies with respect to the diagnosis of geometry and topology of entities. The output of the system is IGES file including . error information which can be visualized with different colors by several commercial visualization systems. The paper focuses on the visualization of the result IGES which can be extended to web based application over internet.

Development of a Web Service based GIS-Enabled Storm-surge Visualization System (웹 서비스 기반 GIS 연동 폭풍.해일 시각화 시스템 개발)

  • Kim, Jin-Ah;Park, Jin-Ah;Park, K.S.;Kwon, Jae-Il
    • Journal of KIISE:Computing Practices and Letters
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    • v.14 no.9
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    • pp.841-849
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    • 2008
  • Natural disaster such as inundation due to the typhoon induced storm-surge has inflicted severe losses on the coastal area. The problem of global warming and sea surface rising has issued and thus influences the increase of frequency and potential power of storm-surge. What we can do is to make intelligent effort to predict and prevent the losses through the early warning and prevention activity from the accurate prediction and forecasting about the time-varying storm-surge height and its arriving time resulted from the numerical simulation with sea observations. In this paper, we developed the web service based GIS-Enabled storm-surge visualization system to predict and prevent the storm-surge disasters. Moreover. for more accurate topography around coastal area and fine-grid storm-surge numerical model, we have accomplished GIS-based coastal mapping through LiDAR measurement.

A Visualization Method of Spatial Information based on Web Map Service (웹 지도 기반의 공간정보 가시화 기법)

  • Kim, Min-Gyu;Lee, Moo-Hun
    • Journal of Digital Convergence
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    • v.14 no.2
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    • pp.209-216
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    • 2016
  • In these days, considering the trend to make various information blended based on spatial information like road, buildings and geography, it is to be very important to visualize maps for showing the information efficiently. However, geometry which is composed with line, polygon commonly used on web service has limitation to express information by limit of usage as well as spending certain time to show the information via map. That's why this study develops the efficient way to visualize huge and complex spatial information. This way is to bring partial space with spatial query, and then query and expand information excluded the former area after detecting movement event based on client. When the way is implemented, it will be expected to make efficient visualization in entire system by not bringing unnecessary information but shortening spending time to show area because it just shows areas which clients want to see.

Hierarchical Web Structuring Using Integer Programming

  • Lee Wookey;Kim Seung;Kim Hando;Kang Suk-Ho
    • Proceedings of the Korean Operations and Management Science Society Conference
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    • 2004.10a
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    • pp.51-67
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    • 2004
  • World Wide Web is nearly ubiquitous and the tremendous growing number of Web information strongly requires a structuring framework by which an overview visualization of Web sites has provided as a visual surrogate for the users. We have a viewpoint that the Web site is a directed graph with nodes and arcs where the nodes correspond to Web pages and the arcs correspond to hypertext links between the Web pages. In dealing with the WWW, the goal in this paper is not to derive a naive shortest path or a fast access method, but to generate an optimal structure based on the context centric weight. We modeled a Web site formally so that a integer programming model can be formulated. Even if changes such as modification of the query terms, the optimized Web site structure can be maintained in terms of sensitivity.

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A Visualization Method for the Ocean Forecast Data using WMS System (WMS 시스템을 이용한 해양예측모델 데이터의 가시화 기법)

  • Kwon, Taejung;Lee, Jaeryoung;Park, Jaepyo
    • The Journal of the Institute of Internet, Broadcasting and Communication
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    • v.18 no.6
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    • pp.11-19
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    • 2018
  • Recently, many companies offer various web-based map that is based on GIS(Geographic Information System) information. Google Map, Open street, Bing Map, Naver Map, Daum Map, Vwolrd Map, etc are the few examples of such system. In this paper, we propose a method to visualize ocean forecasting model data considering the flow diagram of tidal current, streamline expression algorithm, and user convenience by using vector field data information that is currently being served. It is confirmed that the proposed method of the flow diagram of tidal current, and stream line expression algorithm is faster than that of conventional ocean prediction model data by more than 2 times.

Effects of Visual Organizer for supporting Web-based Instruction (웹 기반 학습 프로그램을 지원하는 시각적 조직자(Visual Organizer) 전략의 효과)

  • Han, Ahn-Na
    • The Journal of the Korea Contents Association
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    • v.8 no.9
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    • pp.281-292
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    • 2008
  • The purpose of this study is to implement a visual organizer which enables learners to support web navigation as well as visual understandings in the electronic document space. I developed a visual organizer according to design principles of visual organizer, and then analysed the effect of a visual organizer on the students' disorientation, perceived usefulness, perceived usability, satisfaction and use intention. According to the result, using the visual organizer was more effect than conventional web-based instruction in view of navigation and visual understandings.

An Unified Spatial Index and Visualization Method for the Trajectory and Grid Queries in Internet of Things

  • Han, Jinju;Na, Chul-Won;Lee, Dahee;Lee, Do-Hoon;On, Byung-Won;Lee, Ryong;Park, Min-Woo;Lee, Sang-Hwan
    • Journal of the Korea Society of Computer and Information
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    • v.24 no.9
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    • pp.83-95
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    • 2019
  • Recently, a variety of IoT data is collected by attaching geosensors to many vehicles that are on the road. IoT data basically has time and space information and is composed of various data such as temperature, humidity, fine dust, Co2, etc. Although a certain sensor data can be retrieved using time, latitude and longitude, which are keys to the IoT data, advanced search engines for IoT data to handle high-level user queries are still limited. There is also a problem with searching large amounts of IoT data without generating indexes, which wastes a great deal of time through sequential scans. In this paper, we propose a unified spatial index model that handles both grid and trajectory queries using a cell-based space-filling curve method. also it presents a visualization method that helps user grasp intuitively. The Trajectory query is to aggregate the traffic of the trajectory cells passed by taxi on the road searched by the user. The grid query is to find the cells on the road searched by the user and to aggregate the fine dust. Based on the generated spatial index, the user interface quickly summarizes the trajectory and grid queries for specific road and all roads, and proposes a Web-based prototype system that can be analyzed intuitively through road and heat map visualization.