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Genotyping of Six Pathogenic Vibrio Species Based on RFLP of 16S rDNAs for Rapid Identification

  • Yoon, Young-Jun;Im, Kyung-Hwan;Koh, Young-Hwan;Kim, Seong-Kon;Kim, Jung-Wan
    • Journal of Microbiology
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    • v.41 no.4
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    • pp.312-319
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    • 2003
  • In an attempt to develop a method for rapid and accurate identification of six Vibrio species that are clinically important and most frequently detected in Korea, 16S rDNA restriction fragment length polymorphism (RFLP) of Vibrio type strains, as well as environmental isolates obtained from the Korean coastal area, was analyzed using ten restriction endonucleases. Digestion of the 16S rDNA fragments amplified by polymerase chain reaction (PCR) with the enzymes gave rise to 2~6 restriction patterns for each digestion for 47 Vibrio strains and isolates. An additional 2~3 restriction patterns were observed for five reference species, including Escherichia coli, Aeromonas hydrophila, A. salmonicida, Photobacterium phosphoreum, and Plesiomonas shigelloides. A genetic distance tree based on RFLP of the bacterial species correlated well with that based on 16S rDNA sequences. The very small 16S rDNA sequence difference (0.1%) between V. alginolyticus and V. parahaemolyticus was resolved clearly by RFLP with a genetic distance of more than 2%. RFLP variation within a species was also detected in the cases of V. parahaemolyticus, V. proteolyticus, and V. vulnificus. According to the RFLP analysis, six Vibrio and five reference species were assigned to 12 genotypes. Using three restriction endonucleases to analyze RFLP proved sufficient to identify the six pathogenic Vibrio species.

ON CLASSES OF RATIONAL RESOLVING SETS OF POWER OF A PATH

  • JAYALAKSHMI, M.;PADMA, M.M.
    • Journal of applied mathematics & informatics
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    • v.39 no.5_6
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    • pp.689-701
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    • 2021
  • The purpose of this paper is to optimize the number of source places required for the unique representation of the destination using the tools of graph theory. A subset S of vertices of a graph G is called a rational resolving set of G if for each pair u, v ∈ V - S, there is a vertex s ∈ S such that d(u/s) ≠ d(v/s), where d(x/s) denotes the mean of the distances from the vertex s to all those y ∈ N[x]. A rational resolving set is called minimal rational resolving set if no proper subset of it is a rational resolving set. In this paper we study varieties of minimal rational resolving sets defined on the basis of its complements and compute the minimum and maximum cardinality of such sets, respectively called as lower and upper rational metric dimensions for power of a path Pn analysing various possibilities.

ON THE FIXING NUMBER OF FUNCTIGRAPHS

  • Fazil, Muhammad;Javaid, Imran;Murtaza, Muhammad
    • Bulletin of the Korean Mathematical Society
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    • v.58 no.1
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    • pp.171-181
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    • 2021
  • The fixing number of a graph G is the smallest order of a subset S of its vertex set V (G) such that the stabilizer of S in G, ��S(G) is trivial. Let G1 and G2 be the disjoint copies of a graph G, and let g : V (G1) → V (G2) be a function. A functigraph FG consists of the vertex set V (G1) ∪ V (G2) and the edge set E(G1) ∪ E(G2) ∪ {uv : v = g(u)}. In this paper, we study the behavior of fixing number in passing from G to FG and find its sharp lower and upper bounds. We also study the fixing number of functigraphs of some well known families of graphs like complete graphs, trees and join graphs.

Swarming Differentiation of Vibrio vulnificus Downregulates the Expression of the vvhBA Hemolysin Gene via the LuxS Quorum-Sensing System

  • Kim Moon-Young;Park Ra-Young;Choi Mi-Hwa;Sun Hui-Yu;Kim Choon-Mee;Kim Soo-Young;Rhee Joon-Haeng;Shin Sung-Heui
    • Journal of Microbiology
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    • v.44 no.2
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    • pp.226-232
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    • 2006
  • Swarming has proven to be a good in vitro model for bacterial surface adherence and colonization, and the swarming differentiation of a bacterium has been shown to be coupled with changes in the expression of virulence factors associated with its invasiveness, particularly in the early stages of infection. In this study, we attempted to determine whether the expression of vvhA, which encodes for hemolysin/cytolysin (VvhA), is either upregulated or downregulated during the swarming differentiation of V. vulnificus. The insertional inactivation of vvhA itself exerted no detectable effect on the expression of V. vulnificus swarming motility. However, in our lacZ-fused vvhA transcriptional reporter assay, vvhA expression decreased in swarming V. vulnificus as compared to non-swarming or planktonic V. vulnificus. The reduced expression of vvhA in swarming V. vulnificus increased as a result of the deletional inactivation of luxS, a gene associated with quorum sensing. These results show that vvhA expression in swarming V. vulnificus is downregulated via the activity of the LuxS quorum-sensing system, suggesting that VvhA performs no essential role in the invasiveness of V. vulnificus via the adherence to and colonization on the body surfaces required in the early stages of the infection. However, VvhA may playa significant role in the pathophysiological deterioration occurring after swarming V. vulnificus is differentiated into planktonic V. vulnificus.

Growth and optical properties for $AgGaS_2$ epilayer by hot wall epitaxy (HWE 방법에 의한 $AgGaS_2$ 박막성장과 광학적특성)

  • Youn, Seuk-Jin;Hong, Kwang-Joon
    • Proceedings of the Korean Institute of Electrical and Electronic Material Engineers Conference
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    • 2004.04b
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    • pp.56-59
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    • 2004
  • The stochiometric composition of $AgGaS_2$ polycrystal source materials for the $AgGaS_2/GaAs$ epilayer was prepared from horizontal furnace. From the extrapolation method of X-ray diffraction patterns it was found that the polycrystal $AgGaS_2$ has tetragonal structure of which lattice constant $a_0$ and $c_0$ were 5.756 ${\AA}$ and 10.305 ${\AA}$, respectively. $AgGaS_2/GaAs$ epilayer was deposited on throughly etched GaAs (100) substrate from mixed crystal $AgGaS_2$ by the Hot Wall Epitaxy (HWE) system. The source and substrate temperature were $590^{\circ}C$ and $440^{\circ}C$ respectively. The crystallinity of the grown $AgGaS_2/GaAs$ epilayer was investigated by the DCRC (double crystal X-ray diffraction rocking curve). The optical energy gaps were found to be 2.61 eV for $AgGaS_2/GaAs$ epilayer at room temperature. The temperature dependence of the photocurrent peak energy is well explained by the Varshni equation, then the constants in the Varshni equation are given by ${\alpha}=8.695{\times}10^{-4}eV/K$, and $\beta$=332 K. From the photocurrent spectra by illumination of polarized light of the $AgGaS_2/GaAs$ epilayer, we have found that crystal field splitting $\Delta$ Cr was 0.28 eV at 20 K. From the PL spectra at 20 K, the peaks corresponding to free and bound excitons and a broad emission band due to D-A pairs are identified. The binding energy of the free excitons are determined to be 0.2676 eV and 0.2430 eV and the dissociation energy of the bound excitons to be 0.4695 eV.

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Effect of Inorganic Salts and Various Bioreactors on the Production of Clavulanic Acid (무기염과 생물반응기의 종류가 Clavulanic acid의 생산에 미치는 영향)

  • Kim, Il-Chul;Kim, Seung-Uk
    • KSBB Journal
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    • v.14 no.4
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    • pp.440-444
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    • 1999
  • For the effecient production of clavulanic acid., a mutant strain Streptomyces clavuligerus KK was selected from Streptomyces clavuligerus ATCC 27064 through mutation with NTG. S. clavuligerus ATCC 27064 produced about 200 mg/L of calvulanic acid when the medium was composed of 1%(W/V) glycerol, 1.5%(W/V) soybean flour, 0.1%(W/V) $KH_2PO_4$, 0.2%(V/V) soybean oil. A selected mutant, S. clavuligerus KK, produced about 1150 mg/L of clavulanic acid in the same medium. After the addition of $MgSO_4$ to the basal medium, S. clavuligerus KK produced about 1550 mg/L of clavulanic acid, with shows about 1.3 times higher than that produced in the basal medium. In order to select the proper bioreactor for the production of clavulanic acid, a batch culture was performed in an airlift, a bubble column and an stirred tank bioreactors. In an airlift bioreactor, about 1350 mg/L of clavulanic acid was produced, in a bubble column bioreactor, about 1550 mg/L, in a stirred tank bioreactor, about 2200 mg/L, respectively. The production of clavulanic acid in stirred tank bioreactor was about 50% higer than that by an airlift and a bubble column bioreactors. According to this result, the stirred tank bioreactor was selected as a proper bioreactor.

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Electrochemical Properties of Graphene-vanadium Oxide Composite Prepared by Electro-deposition for Electrochemical Capacitors (양극전착을 통한 그래핀-바나듐 산화물 복합체 제조 및 전기화학적 특성평가)

  • Jeong, Heeyoung;Jeong, Sang Mun
    • Korean Chemical Engineering Research
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    • v.53 no.2
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    • pp.131-136
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    • 2015
  • The nanostructural graphene/vanadium oxide (graphene/$V_2O_5$) composite with enhanced capacitance was synthesized by the electro-deposition in 0.5 M $VOSO_4$ solution. The morphology of composites was characterized using scanning electron microscopy (SEM), x-ray diffraction pattern (XRD), and x-ray photoelectron spectroscopy (XPS). The oxidation states of the electro-deposited vanadium oxide was found to be $V^{5+}$ and $V^{4+}$. The morphology of the prepared graphene/$V_2O_5$ composite exhibits a netlike nano-structure with $V_2O_5$ nanorods in about 100 nm diameter, which could lead a better contact between electrolyte an electrode. The composite with a deposition time of 4,000 s exhibits the specific capacitance of $854mF/cm^2$ at a scan rate of 20 mV/s and the capacitance retention of 53% after 1000 CV cycles.

Development and validation of transient analysis module in nodal diffusion code RAST-V with Kalinin-3 coolant transient benchmark

  • Jaerim Jang;Deokjung Lee
    • Nuclear Engineering and Technology
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    • v.56 no.6
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    • pp.2163-2173
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    • 2024
  • This study introduces a transient analysis module developed for RAST-V and validates it using the Kalinin-3 benchmark problem. For the benchmark analysis, RAST-V standalone and STREAM/RAST-V calculations were performed. STREAM supplies the few-group constants and RAST-V conducts a 3D core simulation utilizing few-group cross-sectional data. To improve accuracy, the main solver was developed based on the advanced semi-analytic nodal method. To evaluate the computational capability of the transient analysis module in RAST-V, Kalinin-3 benchmark is employed. Kalinin-3 represents a coolant transient benchmark that offers experimental data during the deactivation of the Main Circulation Pumps. Consequently, the transient calculations reflected the changes in the reactor flow rate. Benchmark comprising steady-state and transient calculations. During the steady state, the STREAM/RAST-V combination demonstrated a 30 ppm root mean square difference from 0 to 128.50 EFPD. For the transient calculations, STREAM/RAST-V showed power differences within ±7 % over a range of 0-300 s. Axial offset differences were within ±3 %, and the RMS difference in radial power ranged within 2.596 % at both 0 and 300 s. Overall, this study effectively demonstrated the newly developed transient solver in RAST-V and validated it using the Kalinin-3 benchmark problem.

The Effect of Redox Potential on the Kinetics of Lysine Production by Corynebacterium glutamicum (Corynebacterium glutamicum에 의한 Lysine 생산에 있어서 산화환원 전위가 발효속도론적 특성에 미치는 영향)

  • 이진희;김성준;이재흥
    • Microbiology and Biotechnology Letters
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    • v.19 no.1
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    • pp.76-81
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    • 1991
  • - The effect of redox potential (ORP) on lysine production by a leucine auxotrophic regulatory mutant of Corynebacterium glutclmicum on molasses medium was investigated in a 2-1 jar fermentor at pH 6.9 and $32^{\circ}C$. At a dilution rate of D=O.l $h ^1$, a maximum yield of Yr,,s=0.24 was obtained in either carbon- or leucine-limited chemostat where the redox potential was between -60 mV and - 100 mV. This level of redox potential corresponded to moderate oxygen deficiency. Under a high oxygen deficient condition of the redox potential of - 130 rnV (oxygen-limited chemostat), all the kinetic parameters such as $Y_[p/s}, q_s\; and \; q_p$ were decreased significantly and significant amounts of byproducts including glycine, alanine and valine were accumulated in the culture, indicating that the control of redox potential is important in lysine fermentation. At the redox potential of - 40 mV, on the other hand, large quantities of arginine (up to 0.38g/l) and glutamic acid (up to 0.12 g/l) were produced. A maximum lysine productivity of 2.41 g/l/h was achieved at - 66 mV under a carbon-limited condition.

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Negative Bias Stress Effect with Offset Structure in Poly-Si TFT's (Offset 구조 Poly-Si TFT의 Negative Bias Stress 효과)

  • 이제혁;변문기;임동규;조봉희;김영호
    • Proceedings of the Korean Institute of Electrical and Electronic Material Engineers Conference
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    • 1998.11a
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    • pp.141-144
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    • 1998
  • The electrical characteristics of poly-Si TFT's with offset structure by negative bias stress are systematically investigated as a function of offset length. The changes of electrical characteristics, V$\_$th/, off-current, on/off ratio, in the offset structured poly-Si TFT's are smaller than that of the conventional structured poly-Si TFT's under the stress condition (V$\_$ds/=20V, V$\_$gs/=-20V). It is found that the hot carrier effect by negative bias stress is suppressed by the offset structured poly-Si TFT's because the local electric field near the drain region is decreased by offset region.

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