• Genes and Genomics
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• v.40 no.11
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• pp.1181-1197
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• 2018

Tropical plant rubber tree (Hevea brasiliensis) is the sole source of commercial natural rubber and low-temperature stress is the most important limiting factor for its cultivation. To characterize the gene expression profiles of H. brasiliensis under the cold stress and discover the key cold stress-induced genes. Three cDNA libraries, CT (control), LT2 (cold treatment at $4^{\circ}C$ for 2 h) and LT24 (cold treatment at $4^{\circ}C$ for 24 h) were constructed for RNA sequencing (RNA-Seq) and gene expression profiling. Quantitative real time PCR (qRT-PCR) was conducted to validate the RNA-Seq and gene differentially expression results. A total of 1457 and 2328 differentially expressed genes (DEGs) in LT2 and LT24 compared with CT were respectively detected. Most significantly enriched KEGG pathways included flavonoid biosynthesis, phenylpropanoid biosynthesis, plant hormone signal transduction, cutin, suberine and wax biosynthesis, Pentose and glucuronate interconversions, phenylalanine metabolism and starch and sucrose metabolism. A total of 239 transcription factors (TFs) were differentially expressed following 2 h or/and 24 h of cold treatment. Cold-response transcription factor families included ARR-B, B3, BES1, bHLH, C2H, CO-like, Dof, ERF, FAR1, G2-like, GRAS, GRF, HD-ZIP, HSF, LBD, MIKC-MADS, M-type MADS, MYB, MYB-related, NAC, RAV, SRS, TALE, TCP, Trihelix, WOX, WRKY, YABBY and ZF-HD. The genome-wide transcriptional response of rubber tree to the cold treatments were determined and a large number of DEGs were characterized including 239 transcription factors, providing important clues for further elucidation of the mechanisms of cold stress responses in rubber tree.

• KOREAN JOURNAL OF CROP SCIENCE
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• v.44 no.3
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• pp.214-220
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• 1999

Rice production in Korea has markedly increased during the last two decades due to newly developed high yielding varieties and improved production technology. This experiment was conducted to determine the potential of tropical japonica germplasm in enhancing the yield of temperate japonica. The yield performance of two tropical japonicas (IR 65597-29-3-2 and IR66154-52-1-2) and one temperate japonica (Dongjinbyeo) was compared at different plant densities and nitrogen levels under Korean environmental conditions. Although tropical japonicas showed low tillering habit and large panicles, they had similar leaf area index and dry weight at heading stage to Dongjinbyeo of the high tillering type indicating that there was not much difference between tropical and temperate japonica in terms of biomass production. The highest milled rice yield of 6.15 t/ha was obtained from Dongjinbyeo at a high nitrogen level with less planting density (220 kg N/ha and 30 $\times$ 15 cm). However, those of the two tropical japonicas were 5.36 t/ha at the condition of 165 kg N/ha and 30 x 10 cm planting density and 5.06 t/ha at the condition of 165kgN/ha and 15 x 15 cm planting density, respectively. Ripened grain of tropical japonicas ranged from 65 to 87%, while that Dongjinbyeo ranged from 82 to 97% under Korean conditions.

• Atmosphere
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• v.18 no.4
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• pp.485-492
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• 2008

This study confirms that a decadal variation of the SST (Sea Surface Temperature) in the WNP (Western North Pacific) has an influence on the genesis and passage ofa Tropical Cyclone. The decadal mode was obtained by calculating the SST anomaly on the domain $150^{\circ}E-190^{\circ}E$, and $5^{\circ}S-5^{\circ}N$. Such decadal variation was subsequently analyzed to confirm that it is a dominant mode in central Pacific region. Next, after classifying the years into relatively positive years and relatively negative years, the characteristics of Tropical Cyclone in each year, such as a genesis and passage frequency, were investigated. Compared to the relatively negative years, during the relatively positive years, the location of Tropical Cyclone genesis was biased toward South-Eastern region, while the characteristics of the cyclone were more distinct during late season of the year trom September to December than in mid season from June to August. Examining the movement passage through the observation of passage fiequency, there was a significant difference between positive year and negative year in their passages at a 90% confidence level. Moreover, the number of Tropical Cyclone, maximum wind, and life time also showed higher values in positive years than in negative years. These features were confirmed by examining the 850hPa cyclonic flow field, vorticity field, and vertical wind shear field, all of which contribute to the genesis of a Tropical Cyclone.

• BMB Reports
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• v.56 no.7
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• pp.398-403
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• 2023

Natural killer (NK) cells are an essential part of the innate immune system that helps control infections and tumors. Recent studies have shown that Vorinostat, a histone deacetylase (HDAC) inhibitor, can cause significant changes in gene expression and signaling pathways in NK cells. Since gene expression in eukaryotic cells is closely linked to the complex three-dimensional (3D) chromatin architecture, an integrative analysis of the transcriptome, histone profiling, chromatin accessibility, and 3D genome organization is needed to gain a more comprehensive understanding of how Vorinostat impacts transcription regulation of NK cells from a chromatin-based perspective. The results demonstrate that Vorinostat treatment reprograms the enhancer landscapes of the human NK-92 NK cell line while overall 3D genome organization remains largely stable. Moreover, we identified that the Vorinostat-induced RUNX3 acetylation is linked to the increased enhancer activity, leading to elevated expression of immune response-related genes via long-range enhancer-promoter chromatin interactions. In summary, these findings have important implications in the development of new therapies for cancer and immune-related diseases by shedding light on the mechanisms underlying Vorinostat's impact on transcriptional regulation in NK cells within the context of 3D enhancer network.

• Journal of Environmental Science International
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• v.24 no.11
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• pp.1493-1500
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• 2015

Observation data (1981-2014) and climate change scenario data (historical: 1981-2005; RCP 2.6 and 8.5: 2006-2100) were used to analyze occurrence and future outlook of the extreme heat days and tropical nights in Daegu and Jeju. Then we compared the mortality and observations data (1993-2013). During 1981-2014, the average of extreme heat days (tropical nights) was 24.41 days (12.47 days) in Daegu, and 6.5 days (22.14 days) in Jeju. Extreme heat days and tropical nights have been similarly increased in Daegu, but tropical nights increased more than extreme heat days in Jeju. Extreme heat days and tropical nights in both, Daegu and Jeju showed high correlation with daily mortality, specifically Daegu's correlation was higher than that of jeju. The yearly increasing rate of extreme heat of the future (2076-2100) was 1.7-3.6 times and 7.8-37.7 times higher than the past (1981-2005) in Daegu and Jeju, respectively. The yearly increase rate of tropical nights of future was 2.6-5.0 times and 2.9-5.6 times higher in Daegu and Jeju, respectively. During 2006-2100 periods, the trend of extreme heat days was observed both in Daegu and Jeju. On the average, extreme heat days and tropical nights in Jeju increased more than that of Daegu. However, the trend of extreme heat days increase in Daegu was higher than that in Jeju, whereas, the trend of tropical nights in Jeju was higher than that in Daegu.

• Parasites, Hosts and Diseases
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• v.44 no.3
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• pp.221-228
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• 2006

We conducted a study to compare the safety and tolerability of anti-relapse drugs elubaquine and primaquine against Plasmodium vivax malaria. After standard therapy with chloroquine, 30 mg/kg given over 3 days, 141 patients with P. vivax infection were randomized to receive primaquine or elubaquine. The 2 treatment regimens were primaquine 30 mg once daily for 7 days (group A, n = 71), and elubaquine 25 mg once daily for 7 days (group B, n = 70). All patients cleared parasitemia within 7 days after chloroquine treatment. Among patients treated with primaquine, one patient relapsed on day 26; no relapse occurred with elubaquine treatement. Both drugs were well tolerated. Adverse effects occurred only in patients with G6PD deficiency who were treated with primaquine (group A, n = 4), whose mean hematocrit fell significantly on days 7,8 and 9 (P= 0.015, 0.027, and 0.048, respectively). No significant change in hematocrit was observed in patients with G6PD deficiency who were treated with elubaquine (group B, n = 3) or in patients with normal G6PD. In conclusion, elubaquine, as anti-relapse therapy for P. vivax malaria, was as safe and well tolerated as primaquine and did not cause clinically significant hemolysis.

• Parasites, Hosts and Diseases
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• v.46 no.4
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• pp.247-251
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• 2008

This study investigated freshwater fish for their current infection status with metacercariae of Clonorchis sinensis in Korea. Twenty-one species of freshwater fish (n = 677) were collected from 34 regions nationwidely from February 2007 to June 2008. They were individually examined by digestion technique. Eight species of freshwater fish from 17 different regions were recognized positive for the metacercariae of C. sinensis. The positive rates (range of metacercariae number per fish) of fish by the species were as follows: 48% (1-1,142) in Pseudorasbora parva, 60% (1-412) in Pungtungia herzi, 15.7% (1-23) in Pseudogobio esocinus, 29% (1-7) in Acheilognathus intermedia, 21% (1-4) in Odontobutis interrupta, 33% (1-6) in Zacco temmincki, 3.6% (1-4) in Zacco platypus, and 26.3% (1) in Hemibarbus labeo. The two species, P. parva and P. herzi, are able to be the index fish for estimation of C. sinensis transmission in a certain locality. Still several species of freshwater fish are briskly transmitting C. sinensis infection in many riverside areas of southern Korea.

• Parasites, Hosts and Diseases
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• v.51 no.1
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• pp.55-59
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• 2013

Twelve 924 bp cytochrome c oxidase subunit 1 (cox1) mitochondrial DNA sequences from Taenia asiatica isolates from Thailand were aligned and compared with multiple sequence isolates from Thailand and 6 other countries from the GenBank database. The genetic divergence of T. asiatica was also compared with Taenia saginata database sequences from 6 different countries in Asia, including Thailand, and 3 countries from other continents. The results showed that there were minor genetic variations within T. asiatica species, while high intraspecies variation was found in T. saginata. There were only 2 haplotypes and 1 polymorphic site found in T. asiatica, but 8 haplotypes and 9 polymorphic sites in T.saginata. Haplotype diversity was very low, 0.067, in T. asiatica and high, 0.700, in T. saginata. The very low genetic diversity suggested that T. asiatica may be at a risk due to the loss of potential adaptive alleles, resulting in reduced viability and decreased responses to environmental changes, which may endanger the species.

• Parasites, Hosts and Diseases
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• v.62 no.1
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• pp.53-63
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• 2024

The intracellular parasite Babesia microti is among the most significant species causing human babesiosis and is an emerging threat to human health worldwide. Unravelling the pathogenic molecular mechanisms of babesiosis is crucial in developing new diagnostic and preventive methods. This study assessed how priming with B. microti surface antigen 1 (BHSA 1) and seroreactive antigen 5-1-1 (BHSA 5-1-1) mediate protection against B. microti infection. The results showed that 500 ㎍/ml rBMSA1 and rBMSA5-1-1 partially inhibited the invasion of B. microti in vitro by 42.0±3.0%, and 48.0±2.1%, respectively. Blood smears revealed that peak infection at 7 days post-infection (dpi) was 19.6%, 24.7%, and 46.7% in the rBMSA1, rBmSA5-1-1, compared to the control groups (healthy mice infected with B. microti only), respectively. Routine blood tests showed higher white blood cell, red blood cell counts, and haemoglobin levels in the 2 groups (BMSA1 and BMSA5 5-1-1) than in the infection control group at 0-28 dpi. Moreover, the 2 groups had higher serum interferon-γ, tumor necrosis factor-α and Interleukin-17A levels, and lower IL-10 levels than the infection control group throughout the study. These 2 potential vaccine candidate proteins partially inhibit in vitro and in vivo B. microti infection and enhance host immunological response against B. microti infection.

• Proceedings of the KSRS Conference
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• v.1
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• pp.51-51
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• 2006