• Journal of Information Processing Systems
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• v.19 no.5
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• pp.652-662
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• 2023

Identifying highly discriminating genes is a critical step in tumor recognition tasks based on microarray gene expression profile data and machine learning. Gene selection based on tree models has been the subject of several studies. However, these methods are based on a single-tree model, often not robust to ultra-highdimensional microarray datasets, resulting in the loss of useful information and unsatisfactory classification accuracy. Motivated by the limitations of single-tree-based gene selection, in this study, ensemble gene selection methods based on multiple-tree models were studied to improve the classification performance of tumor identification. Specifically, we selected the three most representative tree models: ID3, random forest, and gradient boosting decision tree. Each tree model selects top-n genes from the microarray dataset based on its intrinsic mechanism. Subsequently, three ensemble gene selection methods were investigated, namely multipletree model intersection, multiple-tree module union, and multiple-tree module cross-union, were investigated. Experimental results on five benchmark public microarray gene expression datasets proved that the multiple tree module union is significantly superior to gene selection based on a single tree model and other competitive gene selection methods in classification accuracy.

• Proceedings of the KAIS Fall Conference
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• 2003.11a
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• pp.223-230
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• 2003

Feature-based similarity retrieval has become an important research issue in multimedia database systems. The features of multimedia data are useful for discriminating between multimedia objects (e 'g', documents, images, video, music score, etc.). For example, images are represented by their color histograms, texture vectors, and shape descriptors, and are usually high-dimensional data. The performance of conventional multidimensional data structures(e'g', R- Tree family, K-D-B tree, grid file, TV-tree) tends to deteriorate as the number of dimensions of feature vectors increases. The R＊-tree is the most successful variant of the R-tree. In this paper, we propose a SOM-based R＊-tree as a new indexing method for high-dimensional feature vectors.The SOM-based R＊-tree combines SOM and R＊-tree to achieve search performance more scalable to high dimensionalities. Self-Organizing Maps (SOMs) provide mapping from high-dimensional feature vectors onto a two dimensional space. The mapping preserves the topology of the feature vectors. The map is called a topological of the feature map, and preserves the mutual relationship (similarity) in the feature spaces of input data, clustering mutually similar feature vectors in neighboring nodes. Each node of the topological feature map holds a codebook vector. A best-matching-image-list. (BMIL) holds similar images that are closest to each codebook vector. In a topological feature map, there are empty nodes in which no image is classified. When we build an R＊-tree, we use codebook vectors of topological feature map which eliminates the empty nodes that cause unnecessary disk access and degrade retrieval performance. We experimentally compare the retrieval time cost of a SOM-based R＊-tree with that of an SOM and an R＊-tree using color feature vectors extracted from 40, 000 images. The result show that the SOM-based R＊-tree outperforms both the SOM and R＊-tree due to the reduction of the number of nodes required to build R＊-tree and retrieval time cost.

• Journal of KIISE:Information Networking
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• v.30 no.3
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• pp.424-436
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• 2003

In this paper, we propose the Centroid-based Backbone Core Tree(CBCT) generation algorithm for the shared tree-based IP multicasting. The proposed algorithm is based on the Core Based Tree(CBT) protocol. Despite the advantages over the source-based trees in terms of scalability, the CBT protocol still has the following limitations; first, the optimal core router selection is very difficult, and second, the multicast traffic is concentrated near a core router. The Backbone Core Tree(BCT) protocol, as an extension of the CBT protocol has been proposed to overcome these limitations of the CBT Instead of selecting a specific core router for each multicast group, the BCT protocol forms a backbone network of candidate core routers which cooperate with one another to make multicast trees. However, the BCT protocol has not mentioned the way of selecting candidate core routers and how to connect them. The proposed CBCT generation algorithm employs the concepts of the minimum spanning tree and the centroid. For the performance evaluation of the proposed algorithm, we showed the performance comparison results for both of the CBT and CBCT protocols.

• KSII Transactions on Internet and Information Systems (TIIS)
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• v.3 no.5
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• pp.527-547
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• 2009

Moving object management is widely used in traffic, logistic and data mining applications in ubiquitous environments. It is required to analyze spatio-temporal data and trajectories for moving object management. In this paper, we proposed a novel index structure for spatio-temporal aggregation of trajectory in a constrained network, named aCN-RB-tree. It manages aggregation values of trajectories using a constraint network-based index and it also supports direction of trajectory. An aCN-RB-tree consists of an aR-tree in its center and an extended B-tree. In this structure, an aR-tree is similar to a Min/Max R-tree, which stores the child nodes' max aggregation value in the parent node. Also, the proposed index structure is based on a constrained network structure such as a FNR-tree, so that it can decrease the dead space of index nodes. Each leaf node of an aR-tree has an extended B-tree which can store timestamp-based aggregation values. As it considers the direction of trajectory, the extended B-tree has a structure with direction. So this kind of aCN-RB-tree index can support efficient search for trajectory and traffic zone. The aCN-RB-tree can find a moving object trajectory in a given time interval efficiently. It can support traffic management systems and mining systems in ubiquitous environments.

• KIPS Transactions on Software and Data Engineering
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• v.5 no.3
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• pp.155-164
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• 2016

For frequency pattern analysis of large databases, the new tree-based frequency pattern analysis algorithm which can compensate for the disadvantages of the Apriori method has been variously studied. In frequency pattern tree, the number of nodes is associated with memory allocation, but also affects memory resource consumption and processing speed of the growth. Therefore, reducing the number of nodes in the tree is very important in the frequency pattern mining. However, the absolute criteria which need to order the transaction items for construction frequency pattern tree has lowered the compression ratio of the tree nodes. But most of the frequency based tree construction methods adapted the absolute criteria. FP-tree is typically frequency pattern tree structure which is an extended prefix-tree structure for storing compressed frequent crucial information about frequent patterns. For construction the tree, all the frequent items in different transactions are sorted according to the absolute criteria, frequency descending order. CanTree also need to absolute criteria, canonical order, to construct the tree. In this paper, we proposed a novel frequency pattern tree construction method that does not use the absolute criteria, IRFP-tree algorithm. IRFP-tree(Intersection Rule based FP-tree). IRFP-tree is constituted with the new paradigm of the intersection rule without the use of the absolute criteria. It increased the compression ratio of the tree nodes, and reduced the tree construction time. Our method has the additional advantage that it provides incremental mining. The reported test result demonstrate the applicability and effectiveness of the proposed approach.

• Proceedings of the Korea Information Processing Society Conference
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• 2009.11a
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• pp.771-772
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• 2009

최근 대표적인 공간 인덱스 구조인 R-tree를 기반으로 KD-tree나 Quad-tree와 같은 공간 분할 특성을 이용하여 인덱싱 성능을 향상시키기 위한 연구가 활발하다. 본 논문에서는 기존에 제시된 R-tree 기반 인덱스 구조인 SQR-tree와 PMR-tree의 특성을 결합하여 대용량 공간 데이타를 보다 효율적으로 처리하는 인덱스 구조인 MSQR-tree(Mapping-based SQR-tree)를 제시한다. SQR-tree는 Quad-tree를 확장한 SQ-tree와 각 SQ-tree 리프 노드마다 실제로 공간 객체를 저장하는 R-tree가 연계되어 있는 인덱스 구조이고, PMR-tree는 R-tree에 R-tree 리프 노드를 직접 접근할 수 있는 매핑 트리를 적용한 인덱스 구조이다. 본 논문에서 제시하는 MSQR-tree는 SQR-tree를 기본 구조로 가지고 R-tree마다 매핑 트리가 적용된 구조를 갖는다. 따라서, MSQR-tree에서는 SQR-tree와 같이 질의가 여러 R-tree에서 분산 처리되고, PMR-tree와 같이 매핑 트리를 통해 R-tree 리프 노드를 빠르게 접근할 수 있다. 마지막으로 성능 실험을 통해 MSQR-tree의 우수성을 입증하였다.

• Spatial Information Research
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• v.18 no.4
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• pp.109-120
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• 2010

Recently, due to rapid increasement of spatial data collected from various geosensors in u-GIS environments, the importance of spatial index for efficient search of large spatial data is rising gradually. Especially, researches based R-Tree to improve search performance of spatial data have been actively performed. These previous researches focus on reducing overlaps between nodes or the height of the R -Tree. However, these can not solve an unnecessary node access problem efficiently occurred in tree traversal. In this paper, we propose a MR-Tree(Mapping-based R-Tree) to solve this problem and to support efficient search of large spatial data. The MR-Tree can improve search performance by using a mapping tree for direct access to leaf nodes of the R-Tree without tree traversal. The mapping tree is composed with MBRs and pointers of R-Tree leaf nodes associating each partition which is made by splitting data area repeatedly along dimensions. Especially, the MR-Tree can be adopted in various variations of the R-Tree easily without a modification of the R-Tree structure. In addition, because the mapping tree is constructed in main memory, search time can be greatly reduced. Finally, we proved superiority of MR-Tree performance through experiments.

• The KIPS Transactions:PartD
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• v.8D no.5
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• pp.507-512
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• 2001

Feature-based similarity has become an important research issue in multimedia database systems. The features of multimedia data are useful for discriminating between multimedia objects. the performance of conventional multidimensional data structures tends to deteriorate as the number of dimensions of feature vectors increase. The $R^{*}-Tree$ is the most successful variant of the R-Tree. In this paper, we propose a SOM-based $R^{*}-Tree$ as a new indexing method for high-dimensional feature vectors. The SOM-based $R^{*}-Tree$ combines SOM and $R^{*}-Tree$ to achieve search performance more scalable to high-dimensionalties. Self-Organizingf Maps (SOMs) provide mapping from high-dimensional feature vectors onto a two-dimensional space. The map is called a topological feature map, and preserves the mutual relationships (similarity) in the feature spaces of input data, clustering mutually similar feature vectors in neighboring nodes. Each node of the topological feature map holds a codebook vector. We experimentally compare the retrieval time cost of a SOM-based $R^{*}-Tree$ with of an SOM and $R^{*}-Tree$ using color feature vectors extracted from 40,000 images. The results show that the SOM-based $R^{*}-Tree$ outperform both the SOM and $R^{*}-Tree$ due to reduction of the number of nodes to build $R^{*}-Tree$ and retrieval time cost.

• Journal of Internet Computing and Services
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• v.10 no.6
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• pp.173-189
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• 2009

Recently, video data has attracted many interest. That is the reason why efficient indexing schemes are required to support the content-based retrieval of video data. But most indexing schemes are not suitable for indexing a high-dimensional data except Hybrid Spill-Tree. In this paper, we propose an efficient high-dimensional indexing scheme to support the content-based retrieval of video data. For this, we extend Hybrid Spill-Tree by using a newly designed clustering technique and by adopting a signature method. Finally, we show that proposed signature-based high dimensional indexing scheme achieves better retrieval performance than existing M-Tree and Hybrid Spill-Tree.

• ETRI Journal
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• v.36 no.3
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• pp.450-459
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• 2014

In this paper, we present a new, easy-to-generate system that is capable of creating virtual 3D tree models and simulating a variety of growth processes of a tree from a single, real tree image. We not only construct various tree models with the same trunk through our proposed digital image matting method and skeleton-based abstraction of branches, but we also animate the visual growth of the constructed 3D tree model through usage of the branch age information combined with a scaling factor. To control the simulation of a tree growth process, we consider tree-growing attributes, such as branching orders, branch width, tree size, and branch self-bending effect, at the same time. Other invisible branches and leaves are automatically attached to the tree by employing parametric branch libraries under the conventional procedural assumption of structure having a local self-similarity. Simulations with a real image confirm that our system makes it possible to achieve realistic tree models and growth processes with ease.