• Bulletin of the Korean Chemical Society
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• v.32 no.12
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• pp.4352-4360
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• 2011

A four dimensional quantitative structure activity relationship analysis was applied to a series of 50 flavonoid inhibitors of $p56^{lck}$ protein tyrosine kinase by the molecular comparative electron topological method. It was found that the -log (IC50) values of the compounds were highly dependent on the topology, size and electrostatic character of the substituents at seven positions of the flavonoid scaffold in this study. Depending on the negative or positive charge of the groups correctly embedded in these substituents, three-dimensional bio-structure to increase or decrease -log (IC50) values in the training set of 39 compounds was predicted. The test set of 11 compounds was used to evaluate the predictivity of the model. To generate 4D-QSAR model, the defined function groups and pharmacophore used as topological descriptors in the calculation of activity were of sufficient statistical quality ($R^2$ = 0.72 and $Q^2$ = 0.69). Ligand docking approach by using Dock 6.0. These compounds include many flavonoid analogs, They were docked onto human families of p56lck PTKs retrieved from the Protein Data Bank, 1lkl.pdb.

• Transactions of the Korean Society of Mechanical Engineers A
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• v.26 no.1
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• pp.48-54
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• 2002

A part definition must not only provide shape information of a nominal part but also contain non-shape information such as tolerances, surface roughness and material specifications. Although machining features are useful for suitable shape information fur process reasoning in CAPP, they need to be integrated with tolerance information for effective process planning. We develop a tolerance modeler that efficiently integrates the machining features with the tolerance information fur feature-based CAPP. It is based on the association of machining features, tolerance features, and tolerances. The tolerance features in this study, where tolerances are assigned, are classified into two types; one type is a face that is a topological entity on a solid model and the other type is a functional geometry that is not referenced to topological entities. The (unctional geometry is represented by using machining features. All the data fur representing the tolerance information are stored completely and unambiguously in an independent tolerance data structure. The developed tolerance modeler is implemented as a module of a comprehensive feature-based CAPP system.

• Journal of the Korean Society of Surveying, Geodesy, Photogrammetry and Cartography
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• v.30 no.3
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• pp.229-240
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• 2012

In Korea, u-City has been constructed as IT-based new city with introduction of the ubiquitous concept. However, most currently provided u-services are just monitoring services based on the USN(Ubiquitous Sensor Network) technology, so spatial analysis is insufficient. Especially, buildings have been rapidly constructed and expanded in multi-levels, and people spend a lot of time in indoor space, so indoor spatial analysis is necessary. Therefore, connectivity relationship in indoor space is analyzed using the topological data model. Topological relationships could be redefined due to the dynamic changes of environment in indoor space, and changes could have an effect on analysis results. In this paper, the algorithms of finding isolated zones is developed by analyzing connectivity relationship between space objects in built-environments after changes of environment in indoor space due to specific situation such as fire. And the system that visualizes isolated zones as well as three-dimensional data structure of indoor space is developed to get the analysis result by using the analysis algorithms.

• Journal of the Korean Data and Information Science Society
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• v.16 no.3
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• pp.683-693
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• 2005

This paper presents a new transmembrane Protein topology prediction method which is an attempt to model the topological rules governing the topogenesis of transmembrane proteins. Context-dependent structural regions of the transmembrane protein are used as basic modeling units in order to effectively represent their topogenic roles during transmembrane protein assembly. These modeling units are modeled by means of a tied-state hidden Markov model, which can express the position-specific effect of amino acids during ransmembrane protein assembly. The performance of prediction improves with these modeling approaches. In particular, marked improvement of orientation prediction shows the validity of the proposed modeling. The proposed method is available at http://bioroutine.com/TRAPTOP.

• Proceedings of the Korean Society of Precision Engineering Conference
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• 2001.04a
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• pp.367-372
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• 2001

Feature restoration is that restore feature to 3D solid model using the feature information in STEP AP224. Feature is very important in CAPP, but feature information is defined very complicated in STEP AP224. This paper recommends the algorithm of extraction the feature information in physical STEP AP224file. This program import STEP AP224 file, parse the geometric and topological information, the tolerance data, and feature information line-by-line. After importation and parsing, store data into database. Feature restoration module analyze database including feature information, extract feature information, e.g. feature type, feature's parameter, etc., analyze the relationship and then restore feature to 3D solid model.

• Transactions of the Korean Society of Automotive Engineers
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• v.10 no.3
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• pp.151-158
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• 2002

Automotive engineers involved in a new car project use various CAD systems that are chosen based on work requirements. For example, engineers in Hyundai Motors are using Pro/Designer and Alias fur the style design, but they use CATIA to design parts and assemblies, ANSYS for FEM analysis, and Pro/Engineer to design engines. Because they use different CAD systems, they have difficulties in collaborative design. Data, which contains errors, is transferred between CAD systems. It is difficult to find out such errors in a large CAD model. An evaluation method for CAD models has been developed in this study. This diagnosis tool analyses a STEP or an IGES file generated from a CAD system, and produces a quantitative error report. The tool has been tested with actual data sets. This paper proposes an algorithm that produces mathematical error values of entities of IGES models that have geometrical data, and entities of STEP models that have topological data, and inspects every part off model. To develop this system, we have used the OpenCASCADE kernel, which is an open source kernel developed by Matra Datavision of France.

• Journal of Intelligence and Information Systems
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• v.4 no.1
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• pp.133-147
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• 1998

Recently, many researchers have been involved in finding deterministic equations which can accurately predict future event, based on chaotic theory, or fractal theory. The theory says that some events which seem very random but internally deterministic can be accurately predicted by fractal equations. In contrast to the conventional methods, such as AR model, MA, model, or ARIMA model, the fractal equation attempts to discover a deterministic order inherent in time series data set. In discovering deterministic order, researchers have found that neural networks are much more effective than the conventional statistical models. Even though prediction accuracy of the network can be different depending on the topological structure and modification of the algorithms, many researchers asserted that the neural network systems outperforms other systems, because of non-linear behaviour of the network models, mechanisms of massive parallel processing, generalization capability based on adaptive learning. However, recent survey shows that prediction accuracy of the forecasting models can be determined by the model structure and data structures. In the experiments based on actual economic data sets, it was found that the prediction accuracy of the neural network model is similar to the performance level of the conventional forecasting model. Especially, for the data set which is deterministically chaotic, the AR model, a conventional statistical model, was not significantly different from the MLP model, a neural network model. This result shows that the forecasting model. This result shows that the forecasting model a, pp.opriate to a prediction task should be selected based on characteristics of the time series data set. Analysis of the characteristics of the data set was performed by fractal analysis, measurement of Hurst index, and measurement of Lyapunov exponents. As a conclusion, a significant difference was not found in forecasting future events for the time series data which is deterministically chaotic, between a conventional forecasting model and a typical neural network model.

• Journal of the Korean Geographical Society
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• v.47 no.3
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• pp.426-439
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• 2012

The goal of this study is to propose a new method to capture the qualitative person spatial behavior. Beyond tracking or indexing the change of the location of a person, the changes in the relationships between a person and its environment are considered as the main source for the formal model of this study. Specifically, this paper focuses on the movement behavior of a person near the boundary of a region. To capture the behavior of person near the boundary of regions, a new formal approach for integrating an object's scope of influence is described. Such an object, a spatio-temporally extended point (STEP), is considered here by addressing its scope of influence as potential events or interactions area in conjunction with its location. The formalism presented is based on a topological data model and introduces a 12-intersection model to represent the topological relations between a region and the STEP in 2-dimensional space. From the perspective of STEP concept, a prototype analysis results are provided by using GPS tracking data in real world.

• Bulletin of the Korean Chemical Society
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• v.30 no.11
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• pp.2717-2722
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• 2009

The use of the classification and regression tree (CART) methodology was studied in a quantitative structure-activity relationship (QSAR) context on a data set consisting of the binding affinities of 39 imidazobenzodiazepines for the α1 benzodiazepine receptor. The 3-D structures of these compounds were optimized using HyperChem software with semiempirical AM1 optimization method. After optimization a set of 1481 zero-to three-dimentional descriptors was calculated for each molecule in the data set. The response (dependent variable) in the tree model consisted of the binding affinities of drugs. Three descriptors (two topological and one 3D-Morse descriptors) were applied in the final tree structure to describe the binding affinities. The mean relative error percent for the data set is 3.20%, compared with a previous model with mean relative error percent of 6.63%. To evaluate the predictive power of CART cross validation method was also performed.

• Journal of Korean Society for Geospatial Information Science
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• v.2 no.1 s.3
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• pp.99-106
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• 1994

Raster data mode and Vector data are the two major model in geographic information systems. These two data models are difficult to be intergrated because of their differences in structures and properties. Almost all of the current GIS systems process in one data model by converting one data type to another type. So. the loss and change of information caused by data conversiion degrades the accuracy of data. In this paper, we propose a new data model which can process two data models without conversion. We use quadtree for raster data and topological vector model for vector data. The output is formed as raster data model of quadtree. We can get more accurate overay output, and this intergrated model is more suitable for data like forest, landuses, soils that consist of classes which have small distribution changes.