• Proceedings of the Microbiological Society of Korea Conference
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• 2006.05a
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• pp.66-68
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• 2006

SUF machinery in Echerichia coli, responsible for the biosynthesis of iron-sulfur clusters, is composed of six protein components (SufABCDSE), among which SufB, SufC, and SufD associate in a complex. We have determined the structures of SufA, SufC, and SufD by X-ray crystallography. SufA is a dimer, in which C-terminal segments containing essential cysteine residues (Cys-Gly-Cys) are positioned to allow coordination of an Fe-S cluster and/or an Fe atom. SufC has the overall structure similar to that of ABC-ATPase but takes an inactive form. SufD has a ${\beta}-helix$ flanked with a-helical domains. We also studied the functional roles of the residues in SufD by mutagenesis and determined the crystal structure of SufCD complex. Molecular mechanism of Fe-S cluster biosynthesis is discussed on the basis of the structural and functional evidence.

• Journal of Microbiology
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• v.41 no.2
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• pp.109-114
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• 2003

A promoter that is inducible by paraquat and menadione, the superoxide generators, independently of soxRS has been found in front of the sufABCDSE operon in Escherichia coli. Based on the observation that SufA is a holomog of IscA that functions in the assembly of iron sulfur cluster and the sufA promoter (sufAp) contains a putative Fur-binding consensus, we investigated whether this gene is regulated by Fur, a ferric uptake regulator, When examined in several sufAp-lacZ chromosomal fusion strains, sufAp was induced by EDTA, an iron chelator and a well-known Fur-inducer, The basal level of sufA expression increased dramatically in fur mutant, suggesting repression of sufAp by Fur. The derepression in fur mutant and EDTA-induction of sufA expression required nucleotides up to -61, where a putative Fur box is located. Purified Fur protein bound to the DNA fragment containing the putative Fur box between -35 and -10 promoter elements. The regulation by Fur and menadione induction of sufAp acted independently. The rpoS mutation increased sufA induction by menadione, suggesting that the stationary sigma factor RpoS acts negatively on sufA induction.

• Journal of Microbiology and Biotechnology
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• v.32 no.9
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• pp.1110-1119
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• 2022

Fe-S clusters are versatile and essential cofactors that participate in multiple and fundamental biological processes. In Escherichia coli, the biogenesis of these cofactors requires either the housekeeping Isc pathway, or the stress-induced Suf pathway which plays a general role under conditions of oxidative stress or iron limitation. In the present work, the Fe-S cluster assembly Isc and Suf systems of acidophilic Bacteria and Archaea, which thrive in highly oxidative environments, were studied. This analysis revealed that acidophilic microorganisms have a complete set of genes encoding for a single system (either Suf or Isc). In acidophilic Proteobacteria and Nitrospirae, a complete set of isc genes (iscRSUAX-hscBA-fdx), but not genes coding for the Suf system, was detected. The activity of the Isc system was studied in Leptospirillum sp. CF-1 (Nitrospirae). RT-PCR experiments showed that eight candidate genes were co-transcribed and conform the isc operon in this strain. Additionally, RT-qPCR assays showed that the expression of the iscS gene was significantly up-regulated in cells exposed to oxidative stress imposed by 260 mM Fe₂(SO₄)₃ for 1 h or iron starvation for 3 h. The activity of cysteine desulfurase (IscS) in CF-1 cell extracts was also upregulated under such conditions. Thus, the Isc system from Leptospirillum sp. CF-1 seems to play an active role in stressful environments. These results contribute to a better understanding of the distribution and role of Fe-S cluster protein biogenesis systems in organisms that thrive in extreme environmental conditions.

• Molecules and Cells
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• v.20 no.1
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• pp.112-118
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• 2005

It was previously shown that AtNAP1 is a plastidic SufB protein involved in Fe-S cluster assembly in Arabidopsis. In this study, we investigated the effects of depleting SufB protein from plant cells using virus-induced gene silencing (VIGS). VIGS of NbNAP1 encoding a Nicotiana benthamiana homolog of AtNAP1 resulted in a leaf yellowing phenotype. NbNAP1 was expressed ubiquitously in plant tissues with the highest level in roots. A GFP fusion protein of the N-terminal region (M1-V103) of NbNAP1 was targeted to chloroplasts. Depletion of NbNAP1 resulted in reduced numbers of chloroplasts of reduced size. Mitochondria also seemed to be affected. Despite the reduced number and size of the chloroplasts in the NbNAP1 VIGS lines, the expression of many nuclear genes encoding chloroplast-targeted proteins and chlorophyll biosynthesis genes remained unchanged.

• Journal of Advanced Marine Engineering and Technology
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• v.32 no.3
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• pp.394-403
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• 2008

The effects of water injection (WI) and urea injection for NOx on a 4-cylinder Direct Injection (DI) diesel engine were investigated experimentally. For water injection, it was installed at the intake pipe and the water quantity was controlled at the intake manifold and Manifold Air Flow (MAF) temperatures while the urea injection was located at the exhaust pipe and the urea quantity was controlled by NOx quantity and MAF. The effects of WI system, urea-SCR system and the combined system were investigated with and without exhaust gas recirculation (EGR). Several experiments were performed to characterize the urea-SCR system, using engine operating points of varying raw NOx emissions. The results of the Stoichiometric Urea Flow (SUF) and NOx map were obtained. In addition, NOx results were illustrated according to the engine speed and load. It is concluded that the NOx reduction effects of the combined system without the EGR were better than those with the EGR-based engine.

• Proceedings of the Zoological Society Korea Conference
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• 2001.10a
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• pp.243.1-243
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• 2001

No Abstract, See Full Text

• Proceedings of the Zoological Society Korea Conference
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• 2003.08a
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• pp.203.3-203
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• 2003

No Abstract, See Full Text

• Journal of Advanced Marine Engineering and Technology
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• v.29 no.6
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• pp.645-653
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• 2005

The effects of a WI(Water Injection) at the intake Pipe and an urea injection at the exhaust pipe for a 4-cylinder DI(Direct Injection) diesel engine were investigated experimentally The water quantity was controlled by temperature of intake manifold and MAF(Manifold Air Flow). In addition, the urea quantify was controlled by NOx quantify and MAF. Effects of WI system, urea-SCR system and tandem system were investigated for with and without EGR(Exhaust Gas Recirculation). As the results. the SUF(Stoichiometric Urea Flow) and NOx map were obtained. In addition, NOx results can be visualized with engine speed and engine load. It was concluded. therefore, that the NOx reduction effects of the tandem system without the EGR were more than those with the EGR base engine.

• Journal of Chest Surgery
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• v.30 no.4
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• pp.441-444
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• 1997

Pure lipoma, originating from the trachea is a very rara disease entity A-37-ycar-old-male patient had suf'leered from intermittent episodes of dyspnea and has been treated under the diagnosis of bronchial asthma for 6 months. On chest CT scan and bronchofiberscopic examination, a round mass with the pedunculated neck was found in the mid-portion of the membranous portion of the intrathoracic trachea. Under the guide of fiberoptic bronchoscope, the mass was extirpated using polypectomy w re loop and eletrocauterization . He was discharged without any events on third postoperative day of operation and has been well without recurrence for 6 months.

• Transactions of the Korean Society of Automotive Engineers
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• v.13 no.5
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• pp.57-63
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• 2005

The effects of an urea injection at the exhaust pipe for a 4-cylinder DI(Direct Injection) diesel engine were investigated with the parameters such as urea-SCR(Selective Catalytic Reduction) and EGR system. The urea quantity was controlled by NOx quantity and MAF(Manifold Air Flow). The urea injection quantity can be controlled with the urea syringe pump, precisely. The effects of NOx reduction for the urea-SCR system were investigated with and without ECR engine, respectively. It was concluded that the SUF(Stoichiometric Urea Flow) is calculated and the NOx results are visualized with engine speed and load. Furthermore, the NOx map is made from this experimental results. It was suggested, therefore, that NOx reduction effects of the urea-SCR system without the EGR engine were better than that with the EGR engine except of low load and low speed.