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The complete chloroplast genome of Limonium tetragonum (Plumbaginaceae) isolated in Korea

  • KIM, Yongsung;XI, Hong;PARK, Jongsun
    • Korean Journal of Plant Taxonomy
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    • v.51 no.3
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    • pp.337-344
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    • 2021
  • The chloroplast genome of Limonium tetragonum (Thunb.) Bullock, a halophytic species, was sequenced to understand genetic differences based on its geographical distribution. The cp genome of L. tetragonum was 154,689 bp long (GC ratio is 37.0%) and has four subregions: 84,572 bp of large single-copy (35.3%) and 12,813 bp of small single-copy (31.5%) regions were separated by 28,562 bp of inverted repeat (40.9%) regions. It contained 128 genes (83 protein-coding genes, eight rRNAs, and 37 tRNAs). Thirty-five single-nucleotide polymorphisms and 33 INDEL regions (88 bp in length) were identified. Maximum-likelihood and Bayesian inference phylogenetic trees showed that L. tetragonum formed a sister group with L. aureum, which is incongruent with certain previous studies, including a phylogenetic analysis.

Phylogenetic position of Daphne genkwa (Thymelaeaceae) inferred from complete chloroplast data

  • YOO, Su-Chang;OH, Sang-Hun;PARK, Jongsun
    • Korean Journal of Plant Taxonomy
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    • v.51 no.2
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    • pp.171-175
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    • 2021
  • Daphne genkwa (Thymelaeaceae) is a small deciduous shrub widely cultivated as an ornamental. The complete chloroplast genome of this species is presented here. The genome is 132,741 bp long and has four subregions: 85,668 bp of large single-copy and 28,365 bp of small single-copy regions are separated by 9,354 bp of inverted repeat regions with 107 genes (71 protein-coding genes, four rRNAs, and 31 tRNAs) and one pseudogene. The phylogenetic tree shows that D. genkwa is nested within Wikstroemia and is not closely related to other species of Daphne, suggesting that it should be recognized as a species of Wikstroemia.

The complete chloroplast genome of Campsis grandiflora (Bignoniaceae)

  • PARK, Jongsun;XI, Hong
    • Korean Journal of Plant Taxonomy
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    • v.52 no.3
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    • pp.156-172
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    • 2022
  • Campsis grandiflora (Thunb.) K. Schum is an ornamental species with various useful biological effects. The chloroplast genome of C. grandiflora isolated in Korea is 154,293 bp long (GC ratio: 38.1%) and has four subregions: 84,121 bp of large single-copy (36.2%) and 18,521 bp of small single-copy (30.0%) regions are separated by 24,332 bp of inverted repeat (42.9%) regions including 132 genes (87 protein-coding genes, eight rRNAs, and 37 tRNAs). One single-nucleotide polymorphism and five insertion and deletion (INDEL) regions (40-bp in total) were identified, indicating a low level of intraspecific variation in the chloroplast genome. All five INDEL regions were linked to the repetitive sequences. Seventy-two normal simple sequence repeats (SSRs) and 47 extended SSRs were identified to develop molecular markers. The phylogenetic trees of 29 representative Bignoniaceae chloroplast genomes indicate that the tribe-level phylogenic relationship is congruent with the findings of previous studies.

Multi-Collector Control for Workload Balancing in Wireless Sensor and Actuator Networks

  • Han, Yamin;Byun, Heejung
    • IEMEK Journal of Embedded Systems and Applications
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    • v.16 no.3
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    • pp.113-117
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    • 2021
  • The data gathering delay and the network lifetime are important indicators to measure the service quality of wireless sensor and actuator networks (WSANs). This study proposes a dynamically cluster head (CH) selection strategy and automatic scheduling scheme of collectors for prolonging the network lifetime and shorting data gathering delay in WSAN. First the monitoring region is equally divided into several subregions and each subregion dynamically selects a sensor node as CH. These can balance the energy consumption of sensor node thereby prolonging the network lifetime. Then a task allocation method based on genetic algorithm is proposed to uniformly assign tasks to actuators. Finally the trajectory of each actuator is optimized by ant colony optimization algorithm. Simulations are conducted to evaluate the effectiveness of the proposed method and the results show that the method performs better to extend network lifetime while also reducing data delay.

The complete chloroplast genome of Aruncus aethusifolius (Rosaceae), a species endemic to Korea

  • PARK, Jongsun;SUH, Hwa-Jung;OH, Sang-Hun
    • Korean Journal of Plant Taxonomy
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    • v.52 no.2
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    • pp.118-122
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    • 2022
  • Aruncus aethusifolius (H. Lév.) Nakai is an endemic species in Korea and is economically important as an ornamental herb. The complete chloroplast genome of A. aethusifolius is 157,217 bp long with four subregions consisting of 85,207 bp of large singlecopy and 19,222 bp of small single-copy regions separated by 26,394 bp of inverted repeat regions. The genome includes 131 genes (86 protein-coding genes, eight rRNAs, and 37 tRNAs). Phylogenetic analyses demonstrates that the chloroplast genome of A. aethusifolius was sister to A. dioicus var. kamtschaticus, forming the strongly supported clade of Aruncus. This is the first report of the chloroplast genome of A. aethusifolius.

The complete chloroplast genome of Erigeron canadensis isolated in Korea (Asteraceae): Insight into the genetic diversity of the invasive species

  • Sang-Hun OH;Jongsun PARK
    • Korean Journal of Plant Taxonomy
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    • v.53 no.1
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    • pp.47-53
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    • 2023
  • We have determined the complete chloroplast genome of Erigeron Canadensis isolated in Korea. The circular chloroplast genome of E. canadensis is 152,767 bp long and has four subregions: 84,317 bp of large single-copy and 18,446 bp of small single-copy regions are separated by 25,004 bp of inverted repeat regions including 133 genes (88 protein-coding genes, eight rRNAs, and 37 tRNAs). The chloroplast genome isolated in Korea differs from the Chinese isolate by 103 single-nucleotide polymorphisms (SNPs) and 47 insertions and deletion (INDEL) regions, suggesting different invasion sources of E. canadensis in Korea and China. A nucleotide diversity analysis revealed that the trend of the nucleotide diversity of E. canadensis followed that of 11 Erigeron chloroplasts, except for three peaks. The phylogenetic tree showed that our E. canadensis chloroplast is clustered with E. canadensis reported from China. Erigeron canadensis can be a good target when attempting to understand genetic diversity of invasive species.

Interannual variabilities of the East Asia precipitation associated with tropical and subtropical sea surface temperature (열대 및 아열대 SST에 관련된 동아시아 강우량의 경년 변동성)

  • Ha, Kyung-Ja
    • Journal of Environmental Science International
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    • v.4 no.5
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    • pp.28-28
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    • 1995
  • The aim of the present study is to investigate the interannual variabilities of the East Asia monsoon rainfall associated with the global sea surface temperature anomaly(SSTA). For this study, the summer rainfall(from June to August) over the twenty-eight period of 1961-1988 were analyzed with being divided by nine-subregions over East Asia including Korea, China and Japan. From the analysis of the principal modes explaining the interannual variation, the interannual variabilities of summer rainfalls in South Japan and Korea are larger than those of the other subregions of the East Asia. There is a strong negative correlation between the summer rainfalls of south China and Korea. In this study, the relationship between the summer monsoon of each subregion and SSTs of the tropical NINO regions, of western Pacific warm pool, and of the subtropical ocean were investigated. The longitudinal sections of the lagged cross correlations of the summer rainfal1 anomaly in (a) Korea and (b) south China, and the monthly SSTA in the equatorial(averaged from 65 to 6N) Pacific were analyzed. The negative maximum correlation pattems of Korea''s stammer rainfal1 and SSTs over the eastern Pacific is transfered to positive maximum conrlation over central Pacific region with a biennial periodicity. In South China, the significant positive correlations are found at -12 month lag over the eastern Pacific and maximum negative correlation at 16 month lag over the central Pacific with the quasi-biennial oscillation. But the correlation coefficient reverses completely to that in Korea. In order to investigate the most prevailing interannual variability of rainfall related to the favored SSTA region, the lagged cross correlations between East Asia rainfall and SSTs over the moO regions(NINO 1+2(0-105, 90W-80W), NINO 3(5N-5S, 150W-90W), NINO 4(5N-5S, 160E-l50W) and the western Pacific worm pool (5N-5S, 120E-l60E) were analyzed. Among the lagged cross-correlation cycles in NINO regions, the maximum correlations for the negative lagged months prevail in NINO 1+2 and NINO 3, and the cross correlations for the positive lagged months NINO 4. It is noteworthy that correlation between the western Pacific warm pool SSTA and the monsoon rainfall in Korea and South China have the maximum value at negative 4 month lag. The evolution of the correlation between the East Asia monsoon rainfall and SSTA is linked to the equatorial convective cluster and related to northward propagating situation, and raising the possibility that the East Asia monsoon precipitation may be more fundamentally related to the interaction of intraseasonal oscillations and the sub-regional characteristics including the surface boundary conditions and the behavior of climatological air mass.

Interannual variabilities of the East Asia precipitation associated with tropical and subtropical sea surface temperature (열대 및 아열대 SST에 관련된 동아시아 강우량의 경년 변동성)

  • 하경자
    • Journal of Environmental Science International
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    • v.4 no.5
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    • pp.413-426
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    • 1995
  • The aim of the present study is to investigate the interannual variabilities of the East Asia monsoon rainfall associated with the global sea surface temperature anomaly(SSTA). For this study, the summer rainfall(from June to August) over the twenty-eight period of 1961-1988 were analyzed with being divided by nine-subregions over East Asia including Korea, China and Japan. From the analysis of the principal modes explaining the interannual variation, the interannual variabilities of summer rainfalls in South Japan and Korea are larger than those of the other subregions of the East Asia. There is a strong negative correlation between the summer rainfalls of south China and Korea. In this study, the relationship between the summer monsoon of each subregion and SSTs of the tropical NINO regions, of western Pacific warm pool, and of the subtropical ocean were investigated. The longitudinal sections of the lagged cross correlations of the summer rainfal1 anomaly in (a) Korea and (b) south China, and the monthly SSTA in the equatorial(averaged from 65 to 6N) Pacific were analyzed. The negative maximum correlation pattems of Korea's stammer rainfal1 and SSTs over the eastern Pacific is transfered to positive maximum conrlation over central Pacific region with a biennial periodicity. In South China, the significant positive correlations are found at -12 month lag over the eastern Pacific and maximum negative correlation at 16 month lag over the central Pacific with the quasi-biennial oscillation. But the correlation coefficient reverses completely to that in Korea. In order to investigate the most prevailing interannual variability of rainfall related to the favored SSTA region, the lagged cross correlations between East Asia rainfall and SSTs over the moO regions(NINO 1+2(0-105, 90W-80W), NINO 3(5N-5S, 150W-90W), NINO 4(5N-5S, 160E-l50W) and the western Pacific worm pool (5N-5S, 120E-l60E) were analyzed. Among the lagged cross-correlation cycles in NINO regions, the maximum correlations for the negative lagged months prevail in NINO 1+2 and NINO 3, and the cross correlations for the positive lagged months NINO 4. It is noteworthy that correlation between the western Pacific warm pool SSTA and the monsoon rainfall in Korea and South China have the maximum value at negative 4 month lag. The evolution of the correlation between the East Asia monsoon rainfall and SSTA is linked to the equatorial convective cluster and related to northward propagating situation, and raising the possibility that the East Asia monsoon precipitation may be more fundamentally related to the interaction of intraseasonal oscillations and the sub-regional characteristics including the surface boundary conditions and the behavior of climatological air mass.

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A Study for Individual Identification by Discriminating the Finger Face Image (손가락 면 영상 판별에 의한 개인 식별 연구)

  • Kim, Hee-Sung;Bae, Byung-Kyu
    • Journal of Korea Multimedia Society
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    • v.13 no.3
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    • pp.378-391
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    • 2010
  • In this paper, it is tested that an individual is able to be identified with finger face images and the results are presented. Special operators, FFG(Facet Function Gradient) masks by which the gradient of a facet function fit on a gray levels of image patches can be computed are used and a new procedure named F-algorithm is introduced to match the finger face images. The finger face image is divided into the equal subregions and each subregions are divided into equal patches with this algorithm. The FFG masks are used for convolution operation over each patch to produce scalar values. These values from a feature matrix, and the identity of fingers is determined by a norm of the elements of the feature matrices. The distribution of the norms shows conspicuous differences between the pairs of hand images of the same persons and the pairs of the different persons. This is a result to prove the ability of discrimination with the finger face image. An identification rate of 95.0% is obtained as a result of the test in which 500 hand images taken from 100 persons are processed through F-algorithm. It is affirmed that the finger face reveals to be such a good biometrics as other hand parts owing to the ability of discrimination and the identification rate.

Corticostriatal Connections of the Superior Temporal Regions in the Macaque Monkey

  • Jung, Yongwook;Hong, Sungwon
    • Animal cells and systems
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    • v.7 no.4
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    • pp.317-325
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    • 2003
  • Corticostriatal connections of auditory areas within the rostral and caudal portions of the superior temporal gyrus (STG) and in the supratemporal plane(STP) of pigtail macaque (Macacca nemestrina) were studied with particular emphasis on specific projections to the ventral striatum. Retrograde tracers were Injected into five different regions of the ventral striatum such as the ventromedial caudate nucleus, ventral shell, central shell, dorsal core of the nucleus accumbens (NA), and ventrolateral putamen to Identify the cells of origin. There were only few projections from the auditory areas in the STP to the ventral striatum. However, the association (or belt) areas of the STG collectively had widespread corticostriatal projections characterized by differential topographic distributions. The rostral parts of the STG strongly projected to the ventromedial caudate nucleus. The midportion of the STG also projected to the same ventral striatal regions, but the connections were relatively less extensive. Interestingly, the caudal portion of the STG had no connection to all subregions of the ventral striatum. These differential patterns of corticostriatal connectivity suggest that the ventromedial caudate nucleus would be a major auditory convergence area and mainly involved in sound recognition rather than spatial localization of sound sources.