• 제목/요약/키워드: Structure-based drug design

검색결과 53건 처리시간 0.019초

Tas13D Inhibits Growth of SMMC-7721 Cell via Suppression VEGF and EGF Expression

  • He, Huai-Zhen;Wang, Nan;Zhang, Jie;Zheng, Lei;Zhang, Yan-Min
    • Asian Pacific Journal of Cancer Prevention
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    • 제13권5호
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    • pp.2009-2014
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    • 2012
  • Objective: Taspine, isolated from Radix et Rhizoma Leonticis has demosntrated potential proctiective effects against cancer. Tas13D, a novel taspine derivative synthetized by structure-based drug design, have been shown to possess interesting biological and pharmacological activities. The current study was designed to evaluate its antiproliferative activity and underlying mechanisms. Methods: Antiproliferative activity of tas13D was evaluated by xenograft in athymic mice in vivo, and by 3-(4, 5-dimethylthiazol-2-yl)-2, 5-diphenyltetrazolium bromide (MTT) and cell migration assays with human liver cancer (SMMC-7721) cell lines in vitro. Docking between tas13D and VEGFR and EGFR was studied by with a Sybyl/Surflex module. VEGF and EGF and their receptor expression was determined by ELISA and real-time PCR methods, respectively. Results: Our present study showed that tas13D inhibited SMMC-7721 xenograft tumor growth, bound tightly with the active site of kinase domains of EGFR and VEGFR, and reduced SMMC-7721 cell proliferation (IC=34.7 ${\mu}mol/L$) and migration compared to negative controls. VEGF and EGF mRNAs were significantly reduced by tas13D treatment in a dose-dependent manner, along with VEGF and EGF production. Conclusion: The obtained results suggest that tas13D inhibits tumor growth and cell proliferation by inhibiting cell migration, downregulating mRNA expression of VEGF and EGF, and decreasing angiogenic factor production. Tas13D deserves further consideration as a chemotherapeutic agent.

$p16^{INK4A}$ 단백질 활성부위(Asp 84-Leu 104)의 용액상 구조 (Solution Structure of 21-Residue Peptide (Asp 84-Leu 104), Functional Site derived from $p16^{INK4A}$)

  • 이호진;안인애;노성구;최영상;윤창노;이강봉
    • 분석과학
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    • 제13권4호
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    • pp.494-503
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    • 2000
  • 암 억제제인 $p16^{INK4A}$ 단백질의 활성부위 84-104번까지의 21개 아미노산으로 이루어진 펩타이드를 합성하여, 이것의 용액상 구조를 CD, $^1H$ NMR 분광법 그리고, 분자 모델링 방법으로 분석하였다. CDK4 그리고 CDK6와 함께 안정된 complex를 형성하는 p16의 활성 펩타이드(84-104 아미노산)는 in vitro에서 pRb를 인산화하는 CDK4/6의 능력을 차단하고, p16단백질의 기능에서 보여주듯이 G1/S상의 세포 Cycle을 차단한다. NOE를 포함하는 $^3J_{NH{\alpha}}$ 스핀결합 상수, $C_{\alpha}H$ 화학적 이동, 아마이드 화학적 이동의 평균 변화 폭 그리고 온도 계수 등은 p16 펩타이드의 이차구조가 helix-turn-helix의 구조를 구성하는 p16단백질과 유사한 2차 구조를 가지고 있음을 보여주었다. NOE에 근거한 거리 및 이면각을 이용한 3.D 기하구조는 p18이나 p19의 대응하는 부위에 대한 결정구조에서 보여준 바와 같이 아미노산 $Gly^{89}-Leu^{91}$(${\varphi}_{i+1}=-79.8^{\circ}$, ${\varphi}_{i+1}=60.2^{\circ}$)사이에는 ${\gamma}$-회전구조를 형성함을 보여주었다. 이렇게 비교적 단단한 구조를 형성하고 있는 ${\gamma}$-회전구조부위는 p16펩타이드 구조를 안정시키며, CDK를 인식하는 부위로 작용할 수 있다. 이러한 ${\gamma}$-회전구조는 항암제 선도물질을 개발하는데 유용하게 활용될 수 있을 것이다.

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혈관모사 마이크로채널이 장착된 3D 종양 세포 배양 시스템의 제작 및 검증 연구 (Fabrication and validation study of a 3D tumor cell culture system equipped with bloodvessle-mimik micro-channel)

  • 박정연;고범석;김기영;이동목;윤길상
    • Design & Manufacturing
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    • 제15권2호
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    • pp.11-16
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    • 2021
  • Recently, three-dimensional (3D) cell culture systems, which are superior to conventional two-dimensional (2D) vascular systems that mimic the in vivo environment, are being actively studied to reproduce drug responses and cell differentiation in organisms. Conventional two-dimensional cell culture methods (scaffold-based and non-scaffold-based) have a limited cell growth rate because the culture cannot supply the culture medium as consistently as microvessels. To solve this problem, we would like to propose a 3D culture system with an environment similar to living cells by continuously supplying the culture medium to the bottom of the 3D cell support. The 3D culture system is a structure in which microvascular structures are combined under a scaffold (agar, collagen, etc.) where cells can settle and grow. First, we have manufactured molds for the formation of four types of microvessel-mimicking chips: width / height ①100 ㎛ / 100 ㎛, ②100 ㎛ / 50 ㎛, ③ 150 ㎛ / 100 ㎛, and ④ 200 ㎛ / 100 ㎛. By injection molding, four types of microfluidic chips were made with GPPS (general purpose polystyrene), and a 100㎛-thick PDMS (polydimethylsiloxane) film was attached to the top of each microfluidic chip. As a result of observing the flow of the culture medium in the microchannel, it was confirmed that when the aspect ratio (height/width) of the microchannel is 1.5 or more, the fluid flows from the inlet to the outlet without a backflow phenomenon. In addition, the culture efficiency experiments of colorectal cancer cells (SW490) were performed in a 3D culture system in which PDMS films with different pore diameters (1/25/45 ㎛) were combined on a microfluidic chip. As a result, it was found that the cell growth rate increased up to 1.3 times and the cell death rate decreased by 71% as a result of the 3D culture system having a hole membrane with a diameter of 10 ㎛ or more compared to the conventional commercial. Based on the results of this study, it is possible to expand and build various 3D cell culture systems that can maximize cell culture efficiency by cell type by adjusting the shape of the microchannel, the size of the film hole, and the flow rate of the inlet.