• 제목/요약/키워드: Statistical descriptors

검색결과 39건 처리시간 0.031초

4D-QSAR Study of p56Ick Protein Tyrosine Kinase Inhibitory Activity of Flavonoid Derivatives Using MCET Method

  • Yilmaz, Hayriye;Guzel, Yahya;Onal, Zulbiye;Altiparmak, Gokce;Kocakaya, Safak Ozhan
    • Bulletin of the Korean Chemical Society
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    • 제32권12호
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    • pp.4352-4360
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    • 2011
  • A four dimensional quantitative structure activity relationship analysis was applied to a series of 50 flavonoid inhibitors of $p56^{lck}$ protein tyrosine kinase by the molecular comparative electron topological method. It was found that the -log (IC50) values of the compounds were highly dependent on the topology, size and electrostatic character of the substituents at seven positions of the flavonoid scaffold in this study. Depending on the negative or positive charge of the groups correctly embedded in these substituents, three-dimensional bio-structure to increase or decrease -log (IC50) values in the training set of 39 compounds was predicted. The test set of 11 compounds was used to evaluate the predictivity of the model. To generate 4D-QSAR model, the defined function groups and pharmacophore used as topological descriptors in the calculation of activity were of sufficient statistical quality ($R^2$ = 0.72 and $Q^2$ = 0.69). Ligand docking approach by using Dock 6.0. These compounds include many flavonoid analogs, They were docked onto human families of p56lck PTKs retrieved from the Protein Data Bank, 1lkl.pdb.

Seismic damage potential described by intensity parameters based on Hilbert-Huang Transform analysis and fundamental frequency of structures

  • Tyrtaiou, Magdalini;Elenas, Anaxagoras
    • Earthquakes and Structures
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    • 제18권4호
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    • pp.507-517
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    • 2020
  • This study aims to present new frequency-related seismic intensity parameters (SIPs) based on the Hilbert-Huang Transform (HHT) analysis. The proposed procedure is utilized for the processing of several seismic accelerograms. Thus, the entire evaluated Hilbert Spectrum (HS) of each considered seismic velocity time-history is investigated first, and then, a delimited area of the same HS around a specific frequency is explored, for the proposition of new SIPs. A first application of the suggested new parameters is to reveal the interrelation between them and the structural damage of a reinforced concrete frame structure. The index of Park and Ang describes the structural damage. The fundamental frequency of the structure is considered as the mentioned specific frequency. Two statistical methods, namely correlation analysis and multiple linear regression analysis, are used to identify the relationship between the considered SIPs and the corresponding structural damage. The results confirm that the new proposed HHT-based parameters are effective descriptors of the seismic damage potential and helpful tools for forecasting the seismic damages on buildings.

정규분포에 대한 교수학적 변환 방식과 학생들의 이해 분석 (A Study on a Didactic Transposition Method and Students' Understanding for the Normal Distribution)

  • 신보미
    • 대한수학교육학회지:수학교육학연구
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    • 제22권2호
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    • pp.117-136
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    • 2012
  • 이 연구는 정규분포에 대한 교수학적 변환 방식과 학생들의 이해의 특징을 분석함으로써 고등학교 통계 단원에서 정규분포를 지도하는 것과 관련된 시사점을 얻는데 목적을 두었다. 이를 위해 정규분포의 역사 발생 과정과 학문적 지식으로서 정규분포의 의미를 확인하여 정규분포의 교수학적 변환 방식을 살펴보기 위한 4개의 분석 관점을 추출하고 이를 토대로 미국, 영국, 우리나라 교과서의 정규분포에 대한 교수학적 변환 방식을 분석하였다. 또한 정규분포에 대한 학생들의 이해 특징과 관련된 선행 연구 결과를 살펴봄으로써 고등학생들의 정규분포에 대한 이해의 특징을 기술하는데 필요한 분석 관점을 4가지로 구체화하였으며, 이를 토대로 분석한 학생들의 이해 특징을 4가지로 요약하였다.

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QSPR Models for Chromatographic Retention of Some Azoles with Physicochemical Properties

  • Polyakova, Yulia;Jin, Long Mei;Row, Kyung-Ho
    • Bulletin of the Korean Chemical Society
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    • 제27권2호
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    • pp.211-218
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    • 2006
  • This work deals with 24 substances composed of nitrogen-containing heterocycles. The relationships between the chromatographic retention factor (k) and those physicochemical properties which are relevant in quantitative structure-properties relationship (QSPR) studies, such as the polarizability $(\alpha)$, molar refractivity (MR), lipophilicity (logP), dipole moment $(\mu)$, total energy $(E_{tot})$, heat of formation $(\Delta H_f)$, molecular surface area $(S_M)$, and binding energy $(E_b)$, were investigated. The accuracy of the simple linear regressions between the chromatographic retention and the descriptors for all of the compounds was satisfactory (correlation coefficient, $0.8 \leq r \leq 1.0$). The QSPR models of these nitrogen-containing heterocyclic compounds could be predicted with a multiple linear regression equation having the statistical index, r = 1.000. This work demonstrated the successful application of the multiple linear approaches through the development of accurate predictive equations for retention factors in liquid chromatography.

Adherence to Recommended Treatments for Early Invasive Breast Cancer: Decisions of Women Attending Surgeons in the Breast Cancer Audit of Australia and New Zealand

  • Roder, David M.;Silva, Primali De;Zorbas, Helen N.;Webster, Fleur;Kollias, James;Pyke, Chris M.;Campbell, Ian D.
    • Asian Pacific Journal of Cancer Prevention
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    • 제13권4호
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    • pp.1675-1682
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    • 2012
  • Aim: The study aim was to determine the frequency with which women decline clinicians' treatment recommendations and variations in this frequency by age, cancer and service descriptors. Design: The study included 36,775 women diagnosed with early invasive breast cancer in 1998-2005 and attending Australian and New Zealand breast surgeons. Rate ratios for declining treatment were examined by descriptor, using bilateral and multiple logistic regression analyses. Proportional hazards regression was used in exploratory analyses of associations with breast cancer death. Results: 3.4% of women declined a recommended treatment of some type, ranging from 2.6% for women under 40 years to 5.8% for those aged 80 years or more, and with parallel increases by age presenting for declining radiotherapy (p<0.001) and axillary surgery (p=0.006). Multiple regression confirmed that common predictors of declining various treatments included low surgeon case load, treatment outside major city centres, and older age. Histological features suggesting a favourable prognosis were often predictive of declining various treatments, although reverse findings also applied with women with positive nodal status being more likely to decline a mastectomy and those with larger tumours more likely to decline chemotherapy. While survival analyses lacked statistical power due to small numbers, higher risks of breast cancer death were suggested, after adjusting for age and conventional clinical risk factors, (1) for women not receiving breast surgery for unstated reasons (RR=2.29; p<0.001); and (2) although not approaching statistical significance $p{\geq}0.200$), for women declining radiotherapy (RR=1.22), a systemic therapy (RR1.11), and more specifically, chemotherapy (RR=1.41). Conclusions: Women have the right to choose their treatments but reasons for declining recommendations require further study to ensure that choices are well informed and clinical outcomes are optimized.

치과위생사의 이직결정에 영향을 미치는 요인에 관한 연구 (The study on determinants for changing employment positions among dental hygienists)

  • 정연화
    • 한국치위생학회지
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    • 제3권2호
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    • pp.183-196
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    • 2003
  • Purpose: This study sought to identify factors associated with dental hygienists' decisions to leave one dental office and commence practice in another. In addition to, the reasons dental hygienists stay in the profession were investigated. Demographic descriptors, including education level, marital status and age, and employment setting were also examined. Methods: Currently practicing dental hygienists in Korea were surveyed from March to May 2003. Data were collected through a questionnaire. The survey collected information concerning the 461 respondents' personal characteristics and reasons associated with changing positions and staying. Data were analyzed using frequency distributions, independent t-tests and chi-square analyses. All statistical analyses were conducted using the Statistical Package for Social Scientists(SPSS v.10, Chicago, Illinois). Results: The primary reasons for taking up another employment were found to be better offer, inadequate salary and personal conflict with dentist. Secondary reasons stated for changing their job revealed additional factors including inadequate salary, better offer, and lack of benefits. The primary influence in deciding to remaining in the practice of dental hygiene was self-development. Family responsibility, safe environment and professional collaboration were also important factors in deciding to remain in workforce. Conclusion: The position changes of dental hygienists are primarily influenced by better offer. Inadequate salary and conflict with dentist were also important factors in deciding to change employment positions. The findings suggest that dental hygienists who remain in the workforce are positively influenced mainly by self-development. Employers of dental hygienists should be aware of these factors in employing process. If more hygienists could remain longer in their positions, the manpower situation would be affected positively.

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2D-QSAR방법을 이용한 농약류의 무지개 송어 급성 어독성 분석 및 예측 (Prediction and analysis of acute fish toxicity of pesticides to the rainbow trout using 2D-QSAR)

  • 송인식;차지영;이성광
    • 분석과학
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    • 제24권6호
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    • pp.544-555
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    • 2011
  • 본 연구는 농약류에 대하여 구조-활성의 정량적 관계(QSAR)를 이용하여 무지개 송어(학명: Oncorhynchus mykiss)의 급성 독성을 예측-분석하는 과정을 수행하였다. 모델 구현을 위해 사용된 275종의 농약류에 대한 수중 독성(96h $LC_{50}$) 값은 DEMETRA프로젝트의 데이터를 사용하였다. 예측 모델에 사용된 2차원 분자 표현자는 PreADMET프로그램으로부터 계산을 하였고, 선형 (다중 선형 회귀 방법)모델과 비선형(서포트 벡터 머신, 인공 신경망) 학습 방법들은 실험값과 예측값의 적합도를 고려하여 최적화 되었다. 데이터 전처리 과정을 거친 뒤에, 5묶음 교차 검증과정을 포함한 모집단 기반 전진 선택법을 통해서 각 학습 방법의 최적의 표현자 집합을 결정하였다. 가장 좋은 결과는 SVM 방법 ($R^2_{CV}$=0.677, RMSECV=0.887, MSECV=0.674) 이었고, EU의 규제 기준에 따른 분류에서는 87%의 정확도를 나타내었다. MLR방법을 통해서는 무지개 송어의 급성 독성에 대하여 독성을 나타내는 농약류의 구조적 특징과 지질 층과의 상호작용을 설명할 수 있었다. 개발된 모든 모델들은 5묶음 교차 검증과 Y-scrambling test을 통해 검증되었다.

Synthesis and 3D-QSARs Analyses of Herbicidal O,O-Dialkyl-1-phenoxyacetoxy-1-methylphosphonate Analogues as a New Class of Potent Inhibitors of Pyruvate Dehydrogenase

  • Soung, Min-Gyu;Hwang, Tae-Yeon;Sung, Nack-Do
    • Bulletin of the Korean Chemical Society
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    • 제31권5호
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    • pp.1361-1367
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    • 2010
  • A series of O,O-dialkyl-1-phenoxyacetoxy-1-methylphosphonate analogues (1~22) as a new class of potent inhibitors of pyruvate dehydrogenase were synthesized and 3D-QSARs (three dimensional qantitative structure-activity relationships) models on the pre-emergency herbicidal activity against the seed of cucumber (Cucumus Sativa L.) were derived and discussed quantitatively using comparative molecular field analysis (CoMFA) and comparative molecular similarity indeces analysis (CoMSIA) methods. The statistical values of CoMSIA models were better predictability and fitness than those of CoMFA models. The inhibitory activities according to the optimized CoMSIA model I were dependent on the electrostatic field (41.4%), the H-bond acceptor field (26.0%), the hydrophobic field (20.8%) and the steric field (11.7%). And also, it was found that the optimized CoMSIA model I with the sensitivity to the perturbation ($d_q{^{2'}}/dr^2{_{yy'}}$ = 0.830) and the prediction ($q^2$ = 0.503) produced by a progressive scrambling analyses were not dependent on chance correlation. From the results of graphical analyses on the contour maps with the optimized CoMSIA model I, it is expected that the structural distinctions and descriptors that subscribe to herbicidal activities will be able to apply new an herbicide design.

Synthesis and Ligand Based 3D-QSAR of 2,3-Bis-benzylidenesuccinaldehyde Derivatives as New Class Potent FPTase Inhibitor, and Prediction of Active Molecules

  • Soung, Min-Gyu;Kim, Jong-Han;Kwon, Byoung-Mog;Sung, Nack-Do
    • Bulletin of the Korean Chemical Society
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    • 제31권5호
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    • pp.1355-1360
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    • 2010
  • In order to search new inhibitors against farnesyl protein transferase (FPTase), a series of 2,3-bis-benzylidenesuccinaldehyde derivatives (1-29) were synthesized and their inhibition activities ($pI_{50}$) against FPTase were measured. From based on the reported results that the inhibitory activities of dimers 2,3-bis-benzylidenesuccinaldehydes were higher than those of monomers cinnamaldehydes, 3D-QSARs on FPTase inhibitory activities of the dimers (1-29) were studied quantitatively using comparative molecular field analysis (CoMFA) and comparative molecular similarity indices analysis (CoMSIA) methods. The statistical qualities of the optimized CoMFA model II ($r^2{_{cv.}}$= 0.693 and $r^2{_{ncv.}}$= 0.974) was higher than those of the CoMSIA model II ($r^2{_{cv.}}$ = 0.484 and $r^2{_{ncv.}}$ = 0.928). The dependence of CoMFA models on chance correlations was evaluated with progressive scrambling analyses. And the inhibitory activity exhibited a strong correlation with steric factors of the substrate molecules. Therefore, from the results of graphical analyses on the contour maps and of predicted higher inhibitory active compounds, it is suggested that the structural distinctions and descriptors that contribute to inhibitory activities ($pI_{50}$) against FPTase will be able to applied new inhibitor design.

생물학적 자극 통제 수단으로 활용하기 위한 돼지 페로몬성 냄새 물질의 탐색: 2-Cyclohexyloxytetrahydrofurane 유도체와 Porcine Odorant Binding Protein 사이의 결합 친화력에 관한 2D-QSAR 모델 (The Search of Pig Pheromonal Odorants for Biostimulation Control System Technologies: A 2D-QSAR Model for Binding Affinity between 2-Cyclohexyloxytetrahydrofurane Analogues and Porcine Odorant Binding Protein)

  • 박창식;최양석;성낙도
    • Reproductive and Developmental Biology
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    • 제31권1호
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    • pp.15-20
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    • 2007
  • 가축의 번식과 수요를 조절할 수 있는 생물학적 자극 통제 수단으로 새로운 돼지 페르몬성 냄새 물질를 탐색하고자, 기질 분자로서 2-cyclohexyloxytetrahydrofurane (A), 2-phenoxytetrahydrofurane (B) 유도체들의 설명인자인 물리화학 파라미터와 돼지 페로몬의 수용체 (pOBP)에 대한 결합 친화력 상수($p[Od.]_{50}$) 간의 2D-QSAR 모델을 유도하고 검토하였다. 2D-QSAR 모델은 결합 친화력 상수를 약 96.4% 설명하는 매우 양호한 모델($r^{2}=0.964$)로서 분자내 치환기의 소수성 (SL) 상수에 관한 적정값이 $(SL)_{opt.}=1.418$일 때 가장 높은 결합 친화력을 나타냄을 알았다. 그러므로 분자내 치환기의 소수성 인자가 결합 친화력 상수에 가장 큰 영향을 미치는 중요한 요소이었다.