• 제목/요약/키워드: Species similarity

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Spatial and Temporal Distribution of Macrobenthos in Intertidal Hard Bottoms in Dokdo Island

  • Kim, Jong-Chun;Park, Kang-Wook;Yoo, Kyong-Dong;Jung, Sung-Yong
    • 한국환경생태학회지
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    • 제29권2호
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    • pp.221-227
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    • 2015
  • This study was carried out to measure seasonal changes in the community structure and species composition of marobenthos in the intertidal area of Dokdo. The macrobenthos identified during this study was comprised of 36 species: predominately 25 species of mollusks(69.4 %), 6 species of arthropods(16.7 %), 3 species of echinodermata(8.3 %) and 1 species of cnidaria (5.6 %). The number of marobenthos species ranged from 27 in Spring to 33 in Autumn. In terms of the top 10 dominant species, there were 7 species of mollusks and 3 species of arthropods in the this study. After analyzing the bray-curtis similarity, it was divided into two large groups(A, B). Such group classification matched the SIMPROF(Similarity Profile Analysis) and the one-way ANOSIM(Analysis of similarities) analysis.

Four newly recorded species of planktonic cyanobacteria (Oscillatoriales, Cyanobacteria) in Korea

  • Ji-Ho, Song;Do-Hyun, Kim;Nam-Ju, Lee;So-Won, Kim;Hye-Ryeung, Wang;Ok-Min, Lee
    • Journal of Species Research
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    • 제11권4호
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    • pp.321-329
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    • 2022
  • Four species of cyanobacteria that are unrecorded in Korea were isolated from freshwater and brackish water. These four species are Laspinema thermale of Laspinemaceae, Planktothricoides raciborskii and Planktothrix spiroides of Microcoleaceae, and Cephalothrix lacustris of Phormidiaceae, all belonging to the order Oscillatoriales. Laspinema thermale is morphologically characterized as apical cells that are longer than other cells. In this strain, the similarity of the 16S rRNA gene sequence with the previously reported L. thermale strains were 99.30-99.50%. Planktothricoides raciborskii, which is characterized by bluntly conical morphology of apical cells, showed 98.80-99.50% of similarity of the 16S rRNA gene sequence to the previously reported P. raciborskii strains. Planktothrix spiroides are characterized by floating due to gas vacuoles. In this strain, the similarity of the 16S rRNA gene sequence with the previously reported P. spiroides strains were 99.80-99.90%. Cephalothrix lacustris, characterized by having calyptra in apical cells, showed 99.80-99.90% similarity of the 16S rRNA gene sequence to previously reported C. lacustris strains. Also, these species were clustered in the same clade in phylogenetic analysis using 16S rRNA gene sequences with each corresponding species.

A report of 9 unrecorded radiation resistant bacterial species in Korea

  • Kang, Myung-Suk;Srinivasan, Sathiyaraj
    • Journal of Species Research
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    • 제6권2호
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    • pp.91-100
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    • 2017
  • Five bacterial strains, ES10-3-3-1, KKM10-2-2-1, Ant11, JM10-4-1-3, and KMS4-11 assigned to the genus Deinococcus were isolated from soil samples collected from Namyangju-si in Gyeonggi-do, Gangnam-gu and Dongdaemun-gu in Seoul, Korea. In addition, four bacterial strains, KKM10-2-7-2, JM10-2-5, JM10-2-6-2, and KKM10-2-3 assigned to the genus Hymenobacter were isolated from soil samples collected from Gangnam-gu and Dongdaemun-gu in Seoul, in South Korea. The five Deinococcus species were Gram-stain positive, pink-pigmented, and short-rod or coccus shaped. The four Hymenobacter species were Gram-stain negative, red-pigmented, and short-rod shaped. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strains ES10-3-3-1, KKM10-2-2-1, Ant11, JM10-4-1-3, and KMS4-11 were most closely related to Deinococcus citri $NCCP-154^T$ (with 99.8% similarity), Deinococcus grandis DSM $12784^T$ (99.0%), Deinococcus marmoris DSM $12784^T$ (98.8%), Deinococcus claudionis $PO-04-19-125^T$ (98.7%), and Deinococcus radioresistens $8A^T$ (99.8%), respectively. KKM10-2-7-2, JM10-2-5, JM10-2-6-2, and KKM10-2-3 were most closely related to Hymenobacter algoricola $VUG-A23a^T$ (99.1% similarity), Hymenobacter elongatus $VUG-A112^T$ (99.1% similarity), Hymenobacter gelipurpurascens $Txg1^T$ (99.1% similarity), and Hymenobacter psychrotolerans $Tibet-IIU11^T$ (99.3% similarity), respectively. These nine species have never been reported in Korea; thus, five Deinococcus species are reported in the family Deinococcaceae, order Deinococcales, class Deinococci, phylum Deinococcus-Thermus and four Hymenobacter species are reported in the family Cytophagaceae, order Cytophagales, class Cytophagia, phylum Bacteroidetes.

Random Amplified Polymorphic DNA Analysis of Genetic Relationships Among Acanthopanax Species

  • Park, Sang-Yong;Yook, Chang-Soo;Nohara, Toshihiro;Mizutani, Takayuki;Tanaka , Takayuki
    • Archives of Pharmacal Research
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    • 제27권12호
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    • pp.1270-1274
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    • 2004
  • Random amplified polymorphic DNA (RAPD) analysis was used to determine the genetic relationships among seventeen species of the Acanthopanax species. The DNA isolated from the leaves of the samples was used as template in polymerase chain reaction (PCR) with twenty random decamer primers in order to distinguish plant subspecies at the level of their genomes. The RAPD patterns were compared by calculating pairwise distances using Dice similarity index, and produced to the genetic similarity dendrogram by unweighted pair-group method arithmetic averaged (UPGMA) analysis, showing three groups; a major cluster(twelve species), minor cluster (4 species) and single-clustering species. The results of RAPD were compatible with the morphological classification, as well as the chemotaxonomic classification of the Acanthopanax species. The Acanthopanax species containing 3,4-seco-lupane type triterpene compounds in their leaves corresponded to the major cluster, another species having oleanane or normal lupane type constituents to minor clusters, and one species not containing triterpenoidal compound to single-cluster.

Species Diversity Analysis of Mushrooms Collected in Mt. Chiak

  • Lee, Byung-Kook;Kim, Kyoung Su;Eom, Ki-Cheol;Seok, Soon-Ja
    • 한국균학회소식:학술대회논문집
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    • 한국균학회 2014년도 춘계학술대회 및 임시총회
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    • pp.19-19
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    • 2014
  • This study included the analysis of mushroom data collected from Mt. Chiak in Gangwon-do using various methods. Former studies of Korean mushrooms are limited by regional characters and there is less species diversity among the regions. This study tried to find a way for the forecast of mushroom distribution and appearance by indexes of species diversity. The indexes used in this study include the number of fungi (N), the number of species (S), similarity index (C), richness index (R1, R2), variety index (V1, V2), evenness index (E1, E2, E3, E4, E5), and dominance index (D1) to analyze variety of species diversity. Analyses of data of fungi using a multistage cluster sampling indicate that the average value of C for years was higher than the average value of C for areas. The mushrooms consisted of 208 species in 686 individuals in limited fungal collection from 2002 to 2003. One hundred thirty nine species in 393 individuals were collected in 2002, and 122 species 293 individuals were collected in 2003. The individuals collected in 2003 were smaller than 2002's individuals. Similarity, richness, and variety indexes' values of 2003 were reduced than 2002's values but dominance index of 2003 was increased than 2002's value. Generally the species diversity of the environment to evaluate the index of similarity, richness, and variety was a higher index; dominance index was lower than that of the surrounding environment, suggesting a good diversity. As a result, the occurrence of mushrooms in the surrounding environment and the various factors seem fell in 2002 compared to 2003. The majority genus of the limited fungal collection was Mycena genus in 63 individuals; the majority species was Laccaria laccata in 34 individuals. Ninety three species in 106 individuals were collected by the extended collection and the majority genus of the extended collection was Amanita genus in 17 individuals; the majority species was Amanita citrina (Schaeff.) Pers. which was found in 5 individuals. This demonstrates that periodical similarity's value was 0.159 is higher than special similarity's 0.119. This indicates that the probability of the appearance of same mushrooms in the same area in following year is higher than the probability of the appearance of same mushrooms in the surrounding area in same year. The value of coefficient of variation (CV), in which the amount of change is much or less by N is higher than the CV value by S. CV value of dominance index(D) was the highest r point among other indexes, and evenness index (E) was the lowest point among other indexes. The correlation matrix with 66 combinations between the indexes, the combinations with correlations was 46 combinations. These results revealed that indexes of R1, V2, and E1 were proper to represent species diversity of fungi based on the correlation matrix and the theory of statistical independence which means there is no or less mutual association. This research would contribute to the study about variable living creature by measuring method and in the future this would be used to figure out regulation about fungi with their correlation, values in ecosystem, develop improving new models about agricultural fungi species and numbers by investigating agricultural variable species.

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길안천 저서성대형무척추동물의 군집안정성 및 유사도 분석 (Analysis of benthic macroinvertebrates community stability and similarity in the Giran stream)

  • 장명성;서을원;이종은
    • 환경생물
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    • 제38권4호
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    • pp.714-723
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    • 2020
  • 본 연구는 길안천의 저서성대형무척추동물 군집구조를 과거와 비교하여 분석하고자, 2018년 총 2회 조사를 실시하여 Lee (2004)의 결과와 비교하였다. 2018년 출현종수는 2003년과 비교하여 총 45종이 증가하였으며, 그중 EPT 분류군이 24종, OCH 분류군이 18종이 추가로 조사되었다. 군집분석 결과, 다양도지수(H')와, 풍부도지수(R')는 증가하였고, 우점도지수(DI)는 감소하는 경향을 보였다. 섭식기능군은 주워먹는무리(GC)에 속하는 종이 과거대비 11종이 추가로 발견되어 가장 높게 나타났고, 서식기능군의 경우 붙는무리(CL)가 41종으로 가장 많은 종이 출현하였다. 군집안정성에서는 특성군 I그룹이 2003년에 57.1%, 2018년에 61.5%로 가장 높은 출현율을 보였다. 생물학적 수질평가 결과, 과거 평균 'II등급'의 수질등급과 '보통'의 환경상태에서 2018년에는 평균 'Ia'등급의 수질과 '매우 양호'한 환경상태를 나타냈다. 2018년의 이화학적 요인과 생물학적 요인과의 상관관계 분석결과, pH 및 BOD는 개체수, 우점도지수(DI), 풍부도지수(R'), 다양도지수(H'), 균등도지수(J')에 유의한 상관관계를 나타냈다. 유사도 분석결과, 각 연도별로 두 개의 유사군으로 분류되었다. 길안천 수계가 취수시설 및 생태공원, 하천정비사업을 진행하면서 발생한 물리적 교란 이후 시간이 지남에 따라 물 흐름 개선과 다양한 미소서식처 형성을 통해 종 다양성 및 풍부도가 높게 나타난 것으로 판단되며, 향후, 제한적인 구간의 하천정비공사로 인한 하상 교란과 수질과의 상관관계가 저서성대형무척추동물의 군집구조와 군집안정성에 미치는 영향에 대해 추가적인 연구가 필요할 것으로 사료된다.

Mass and Heat Transfer Characteristics of Vertical Flat Plate with Free Convection

  • Kim Myoung- Jun
    • Journal of Advanced Marine Engineering and Technology
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    • 제29권7호
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    • pp.729-735
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    • 2005
  • This paper has dealt with the characteristics of mass and heat transfer of vertical flat plate with free convection. The theory of similarity transformations applied to the momentum and energy equations for free convection. To derive the similarity equation of mass transfer. the equation for conservation of species was added to the continuity. momentum and energy equations. The momentum, energy and species equations set numerically to obtain the velocity, temperature and mass fraction of species as dimensionless. For cases where momentum transport dominates, the thermal boundary layers are shorter than the momentum boundary layer. The relationships between momentum, energy and species were clarified from this study.

Phylogenic Relationship of Allium Species in Subgenus Rhizirideum by PCR DNA Fingerprint

  • Kim, Haeng-Hoon;Kang, Hee-Wan;Park, Yong-Jin;Baek, Hyung-Jin;Gwag, Jae-Kyun
    • 한국작물학회지
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    • 제46권4호
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    • pp.328-333
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    • 2001
  • Allium is one of the largest genera, which has more than 700 species. PCR by URP (universal rice primer) primers was carried out to get phylogenetic information on 26 species, 62 accessions of subgenus Rhizirideum. The accessions were divided into seven groups at 0.76 similarity level. A. tuberosum (Chinese chives) and A. ramosum represented high similarity of 0.91. A. montanum, A. nutans, A. senescens, A. libani, A. odorum, A. austrosibiricum, and A. narcissiflorium grouped at 0.80 similarity. Some of the wild species, such as A. prostratum, A. polyrhizum, A. odorum, and A. mongolicum, showed different band patterns according to polyploidy, occurrence of B-chromosome, collection site, and origin.

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천연활엽수림의 지형적 위치와 사면방위에 따른 군집 구조적 속성 분석 및 비교 (Analysis and Comparison of Community Structural Attributes by Topographic Positions and Aspects in the Natural Deciduous Forest)

  • 양희문;김지홍
    • Journal of Forest and Environmental Science
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    • 제18권1호
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    • pp.73-86
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    • 2001
  • 강원도 가리산 일대 천연활엽수림을 대상으로 산림의 구조적 변화에 영향을 미칠 것으로 고려되는 지형적 위치와 사면방위에 따라 군집을 분류하고, 표본구 조사법에 의하여 군집 구조적 속성을 분석, 비교한 결과는 다음과 같다. 1. 계곡지역을 제외한 산복과 능선지역의 상층임관에서는 신갈나무의 세력이 가장 높게 나타났으나, 계곡지역에서 가장 높은 상대우점도를 보이는 가래나무, 능선지역에서만 높은 세력을 보이는 소나무 등에 의해 지형적 위치별 산림군집간 수종구성의 차이가 큰 것으로 파악되었다. 모든 사면방위 산림군집에서는 신갈나무가 가장 높은 상대우점도를 보이고 있으며, 공통적인 우점종들이 많이 나타나고 있어 지형적 위치별 산림군집들에 비해 수종구성의 변이가 크지 않은 것으로 파악되었다. 2. 상층임관에서는 산복지역의 종다양도가 1.96으로 가장 높았으나, 중층과 하층임관에서는 계곡지역의 종다양도가 각각 2.66, 2.77로 가장 높게 나타났다. 능선지역은 낮은 종풍부성과 균재성에 의해 모든 수관층에서 종다양도가 낮은 것으로 파악되었다. 사면방위에 따라서는 북동지역이 모든 수관층에서 가장 높은 것으로 파악되었으며, 군집간 종다양도의 변이 역시 지형적 위치별 산림군집이 사면방위 군집에 비해 큰 것으로 나타났다 3. 지형적 위치별 산림군집간 유사도는 산복과 능선지역이 가장 높게, 계독과 능선지역이 가장 낮게 산출되었으나, 전반적으로 유사도 수치가 낮아 산림군집간에는 구조적 차이가 큰 것으로 파악되었다. 반면에, 사면방위별 산림군집들은 전체 산림지역과의 유사도 뿐만 아니라 상호간의 군집간 유사도가 높은 것으로 파악되었다.

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Comparison of Plant Diversity of Natural Forest and Plantations of Rema-Kalenga Wildlife Sanctuary of Bangladesh

  • Sobuj, Norul-Alam;Rahman, Mizanur
    • Journal of Forest and Environmental Science
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    • 제27권3호
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    • pp.127-134
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    • 2011
  • The purpose of the study was to assess and compare the diversity of plant species (trees, shrubs, herbs) of natural forest and plantations. A total of 52 plant species were recorded in the natural forest, of which 16 were trees, 15 were shrubs and 21 were herbs. On the contrary, 31 species of plants including 11 trees, 8 shrubs and 12 herbs were identified in plantation forest. Shannon-Wiener diversity index were 2.70, 2.72 and 3.12 for trees, shrubs and herbs respectively in the natural forest. However, it was 2.35 for tree species, 2.31 for shrub species and 2.81 for herb species in the plantation forest. Jaccard's similarity index showed that 71% species of trees, 44% species of shrubs and 43% species of herbs were same in plantations and natural forest.