• Title/Summary/Keyword: Species distribution models

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Selection and Management Strategies for Restoration and Conservation Target Sites of Mankyua chejuense using Species Distribution Models (종 분포 모형을 활용한 제주고사리삼의 복원 및 보전 대상지 선정과 관리방안)

  • Lee, Sang-Wook;Jang, Rae-Ik;Oh, Hong-Shik;Jeon, Seong-Woo
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.26 no.3
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    • pp.29-42
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    • 2023
  • As the destruction of habitats due to recent development continues, there is also increasing interest in endangered species. Mankyua chejuense is a vulnerable species that is sensitive to changes in population and habitat, and it has recently been upgraded from Endangered Species II to Endangered Species I, requiring significant management efforts. So in this study, we analyzed the potential habitats of Mankyua chejuense using MaxEnt(Maximum Entropy) modeling. We developed three models: one that considered only environmental characteristics, one that considered artificial factors, and one that reflected the habitat of dominant tree species in the overstory. Based on previous studies, we incorporated environmental and human influence factors for the habitats of Mankyua chejuense into spatial information, and we also used the habitat distribution models of dominant tree species, including Ulmus parvifolia, Maclura tricuspidata, and Ligustrum obtusifolium, that have been previously identified as major overstory species of Mankyua chejuense. Our analysis revealed that rock exposure, elevation, slope, forest type, building density, and soil type were the main factors determining the potential habitat of Mankyua chejuense. Differences among the three models were observed in the edges of the habitats due to human influence factors, and results varied depending on the similarity of the habitats of Mankyua chejuense and the dominant tree species in the overstory. The potential habitats of Mankyua chejuense presented in this study include areas where the species could potentially inhabit in addition to existing habitats. Therefore, these results can be used for the conservation and management planning of Mankyua chejuense.

A Comparative Study on Species Richness and Land Suitability Assessment - Focused on city in Boryeong - (종풍부도와 세분화된 관리지역 비교 연구 - 보령시를 대상으로 -)

  • Shin, Manseok;Jang, Raeik;Seo, Changwan;Lee, Myungwoo
    • Journal of Environmental Impact Assessment
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    • v.24 no.1
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    • pp.35-50
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    • 2015
  • The purposes of this study are to apply species distribution modeling in urban management planning for habitat conservation in non-urban area and to provide a detailed classification method for management zone. To achieve these objectives, Species Distribution Model was used to generate species richness and then to compare with the results from land suitability assessment. 59 species distribution models were developed by Maxent. This study used 15 model variables (5 topographical variables, 4 vegetation variables, and 6 distance variables) for Maxent models. Then species richness was created by sum of predicted species distributions. Land suitability assessment was conducted with criteria from type I of "Guidelines for land suitability assessment". After acquiring evaluation values from species richness and land suitability assessment, the results from these two models were compared according to the five grades of classification. The areas with the identical grade in Species richness and land suitability assessment are categorized and then compared each other. The comparison results are Grade1 10.92%, Grade2 37.10%, Grade3 34.56%, Grade4 20.89% and Grade5 1.73%. Grade1 and Grade5 showed the lowest agreement rate. Namely, development or conservation grade showed high disagreement between two assessment system. Therefore, the areas located between urban, agriculture, forest, and reserve have a tendency to change easily by development plans. Even though management areas are not the core area of reserve, it is important to provide a venue for species habitat and eco-corridor to protect and improve biodiversity in terms of landscape ecology. Consequently, adoption of species richness in three levels of management area classification such as conservation, production, planning should be considered in urban management plan.

Residual spatial autocorrelation in macroecological and biogeographical modeling: a review

  • Gaspard, Guetchine;Kim, Daehyun;Chun, Yongwan
    • Journal of Ecology and Environment
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    • v.43 no.2
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    • pp.191-201
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    • 2019
  • Macroecologists and biogeographers continue to predict the distribution of species across space based on the relationship between biotic processes and environmental variables. This approach uses data related to, for example, species abundance or presence/absence, climate, geomorphology, and soils. Researchers have acknowledged in their statistical analyses the importance of accounting for the effects of spatial autocorrelation (SAC), which indicates a degree of dependence between pairs of nearby observations. It has been agreed that residual spatial autocorrelation (rSAC) can have a substantial impact on modeling processes and inferences. However, more attention should be paid to the sources of rSAC and the degree to which rSAC becomes problematic. Here, we review previous studies to identify diverse factors that potentially induce the presence of rSAC in macroecological and biogeographical models. Furthermore, an emphasis is put on the quantification of rSAC by seeking to unveil the magnitude to which the presence of SAC in model residuals becomes detrimental to the modeling process. It turned out that five categories of factors can drive the presence of SAC in model residuals: ecological data and processes, scale and distance, missing variables, sampling design, and assumptions and methodological approaches. Additionally, we noted that more explicit and elaborated discussion of rSAC should be presented in species distribution modeling. Future investigations involving the quantification of rSAC are recommended in order to understand when rSAC can have an adverse effect on the modeling process.

Inverse Relationship of Hemiptera Richness with Temperature in South Korea

  • Kwon, Tae-Sung;Jung, Sungcheol;Park, Young-Seuk
    • Korean Journal of Ecology and Environment
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    • v.54 no.2
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    • pp.102-107
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    • 2021
  • The distribution pattern of species richness was determined by temperature. To examine the relationship between hemipteran richness and temperature, hemipteran species were collected using pitfall traps at six different oak forest sites with different annual mean temperatures in South Korea. Multiple linear regression analyses were conducted with mean annual temperature (MAT) and plant richness to evaluate differences in hemipteran richness. The influences of MAT and plant richness of study sites on hemipteran richness were examined by comparing three models (plant richness+MAT+MAT2, plant richness+MAT, and MAT) or two models (plant richness+MAT and MAT). Hemipteran richness showed an inverse diversity pattern as a function of temperature, with higher species richness at lower temperature sites. Meanwhile, Aphididae showed a bell-shaped diversity pattern with the highest value at low medium temperatures. The regression analysis showed that hemipteran richness was affected by temperature and plant richness in their habitats.

A Study on the Species Distribution Modeling using National Ecosystem Survey Data (전국자연환경조사 자료를 이용한 종분포모형 연구)

  • Kim, Jiyeon;Seo, Changwan;Kwon, Hyuksoo;Ryu, Jieun;Kim, Myungjin
    • Journal of Environmental Impact Assessment
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    • v.21 no.4
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    • pp.593-607
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    • 2012
  • The Ministry of Environment have started the 'National Ecosystem Survey' since 1986. It has been carried out nationwide every ten years as the largest survey project in Korea. The second one and the third one produced the GIS-based inventory of species. Three survey methods were different from each other. There were few studies for species distribution using national survey data in Korea. The purposes of this study are to test species distribution models for finding the most suitable modeling methods for the National Ecosystem Survey data and to investigate the modeling results according to survey methods and taxonominal group. Occurrence data of nine species were extracted from the National Ecosystem Survey by taxonomical group (plant, mammal, and bird). Plants are Korean winter hazel (Corylopsis coreana), Iris odaesanensis (Iris odaesanensis), and Berchemia (Berchemia berchemiaefolia). Mammals are Korean Goral (Nemorhaedus goral), Marten (Martes flavigula koreana), and Leopard cat (Felis bengalensis). Birds are Black Woodpecker (Dryocopus martius), Eagle Owl (Bubo Bubo), and Common Buzzard (Buteo buteo). Environmental variables consisted of climate, topography, soil and vegetation structure. Two modeling methods (GAM, Maxent) were tested across nine species, and predictive species maps of target species were produced. The results of this study were as follows. Firstly, Maxent showed similar 5 cross-validated AUC with GAM. Maxent is more useful model to develop than GAM because National Ecosystem Survey data has presence-only data. Therefore, Maxent is more useful species distribution model for National Ecosystem Survey data. Secondly, the modeling results between the second and third survey methods showed sometimes different because of each different surveying methods. Therefore, we need to combine two data for producing a reasonable result. Lastly, modeling result showed different predicted distribution pattern by taxonominal group. These results should be considered if we want to develop a species distribution model using the National Ecosystem Survey and apply it to a nationwide biodiversity research.

Individual-Based Models Applied to Species Abundance Patterns in Benthic Macroinvertebrate Communities in Streams in Response to Pollution

  • Cho, Woon-Seok;Nguyen, Tuyen Van;Chon, Tae-Soo
    • Korean Journal of Ecology and Environment
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    • v.45 no.4
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    • pp.420-443
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    • 2012
  • An Individual-Based Model (IBM) was developed by employing natural and toxic survival rates of individuals to elucidate the community responses of benthic macroin-vertebrates to anthropogenic disturbance in the streams. Experimental models (dose-response and relative sensitivity) and mathematical models (power law and negative exponential distribution) were applied to determinate the individual survival rates due to acute toxicity in stressful conditions. A power law was additionally used to present the natural survival rate. Life events, covering movement, exposure to contaminants, death and reproduction, were simulated in the IBM at the individual level in small (1 m) and short (1 week) scales to produce species abundance distributions (SADs) at the community level in large (5 km) and long (1~2 years) scales. Consequently, the SADs, such as geometric series, log-series, and log-normal distribution, were accordingly observed at severely (Biological Monitoring Working Party (BMWP<10), intermediately (BMWP<40) and weakly (BMWP${\geq}50$) polluted sites. The results from a power law and negative exponential distribution were suitably fitted to the field data across the different levels of pollution, according to the Kolmogorov-Smirnov test. The IBMs incorporating natural and toxic survival rates in individuals were useful for presenting community responses to disturbances and could be utilized as an integrative tool to elucidate community establishment processes in benthic macroin-vertebrates in the streams.

Climatic and Environmental Effects on Distribution of Narrow Range Plants (국지적으로 분포하는 식물에 대한 기후 및 환경변수 영향)

  • Kwon, Hyuksoo;Ryu, Jieun;Seo, Changwan;Kim, Jiyeon;Tho, Jaehwa;Suh, Minhwan;Park, Chonghwa
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.15 no.6
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    • pp.17-27
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    • 2012
  • Climate is generally accepted as one of the major determinants of plants distribution. Plants are sensitive to bioclimates, and local variations of climate determine habitats of plants. The purpose of this paper is to identify the factors affecting the distribution of narrow-range plants in South Korea using National Survey of Natural Environment data. We developed species distribution models for 6 plant species using climate, topographic and soil factors. All 6 plants were most sensitive to climatic factors but less other factors at national scale. Meliosma myriantha, Stewartia koreana and Eurya japonica, distributed at southern and coast region in Korea, were most sensitive to precipitation and temperature. Meliosma myriantha was mostly effected by annual precipitation and precipitation of driest quarter, Stewartia koreana was effected by annual precipitation and elevation, and Eurya japonica was affected by temperature seasonality and precipitation of driest quarter. On the other hand, Spiraea salicifolia, Rhododendron micranthum and Acer tegmentosum, distributed at central and northern inland in Korea, were most sensitive to temperature and elevation. Spiraea salicifolia was affected by mean temperature of coldest quarter and annual mean temperature, Rhododendron micranthum and Acer tegmentosum were affected by mean temperature of warmest quarter and elevation. We can apply this result to future plant habitat distribution under climate change.

Selection of Optimal Models for Predicting the Distribution of Invasive Alien Plants Species (IAPS) in Forest Genetic Resource Reserves (산림생태계 보호구역에서 외래식물 분포 예측을 위한 최적 모형의 선발)

  • Lim, Chi-hong;Jung, Song-hie;Jung, Su-young;Kim, Nam-shin;Cho, Yong-chan
    • Korean Journal of Environment and Ecology
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    • v.34 no.6
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    • pp.589-600
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    • 2020
  • Effective conservation and management of protected areas require monitoring the settlement of invasive alien species and reducing their dispersion capacity. We simulated the potential distribution of invasive alien plant species (IAPS) using three representative species distribution models (Bioclim, GLM, and MaxEnt) based on the IAPS distribution in the forest genetic resource reserve (2,274ha) in Uljin-gun, Korea. We then selected the realistic and suitable species distribution model that reflects the local region and ecological management characteristics based on the simulation results. The simulation predicted the tendency of the IAPS distributed along the linear landscape elements, such as roads, and including some forest harvested area. The statistical comparison of the prediction and accuracy of each model tested in this study showed that the GLM and MaxEnt models generally had high performance and accuracy compared to the Bioclim model. The Bioclim model calculated the largest potential distribution area, followed by GLM and MaxEnt in that order. The Phenomenological review of the simulation results showed that the sample size more significantly affected the GLM and Bioclim models, while the MaxEnt model was the most consistent regardless of the sample size. The optimal model overall for predicting the distribution of IAPS among the three models was the MaxEnt model. The model selection approach based on detailed flora distribution data presented in this study is expected to be useful for efficiently managing the conservation areas and identifying the realistic and precise species distribution model reflecting local characteristics.

Selecting Protected Area Using Species Richness

  • Kwon, Hyuksoo;Kim, Jiyoen;Seo, Changwan
    • Korean Journal of Environment and Ecology
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    • v.29 no.1
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    • pp.14-20
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    • 2015
  • We created species richness maps of mammals, birds and plants using "Nnational Ecosystem Survey" data and identified correlations between species richness maps of each taxa. We examine the distribution of species richness of each taxa and calculated conservation priority rank through plotting species-area curves using an additive benefit function in Zonation. The conclusions of this study are as follows. First, plant showed high species richness in Gangwon province and Baekdudaegan, and mammals showed high species richness at eastern slope of Baekdudaegan in Gangwon province unusually and the species richness of mammals distributed equally except Gyeonggi and Chungnam province. However, birds showed high species richness in the west costal because the area is the major route of winter migratory birds. Second, correlation of each taxa's distribution is not significant. Correlation between mammals and birds is positive but correlations between birds and others are negative. Because mammals inhabit in forest but birds mostly live in coastal wetlands and rivers. Therefore, bird's habitats are not shared with other habitats. Third, the probability of mammals occurrence is very low under 25% in species-area curve, others increase proportionally to area. Birds increase dramatically richness at 10% because bird's habitat is concentrated in coastal wetlands and rivers. Plants increased gently species richness due to large forest in Gangwon province. We can calculate the predicted number of species in curves and plan various conservation strategies using the marginal number of species. Finally, high priority ranks for conservation distributed mainly in Gangwon province and Baekdudaegan. When we compared with priority map and terrestrial national parks, the parks were evaluated as high priority ranks. However, the rank of parks away from Baekdudaegan was low. This study has the meaning of selecting conservation priority area using National Ecosystem Survey. In spite of the omission of survey data in national parks and Baekdudaegan, the results were good. Therefore, the priority rank method using species distribution models is useful to selecting protected areas and improving conservation plans. However, it is needed to select protected areas considering various evaluation factors, such as rarity, connectivity, representativeness, focal species and so on because there is a limit to select protected area only using species richness.

Conservation Biology of Endangered Plant Species in the National Parks of Korea with Special Reference to Iris dichotoma Pall. (Iridaceae)

  • So, Soonku;Myeong, Hyeon-Ho;Kim, Tae Geun;Oh, Jang-Geun;Kim, Ji-young;Choi, Dae-hoon;Yun, Ju-Ung;Kim, Byung-Bu
    • Proceedings of the Plant Resources Society of Korea Conference
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    • 2019.10a
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    • pp.32-32
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    • 2019
  • The aim of this study was to provide basic guidelines for conservation and management of endangered plants in the national parks of Korea. Iris dichotoma Pall. (Iridaceae), which is a popular garden plant, is considered a second-class endangered species by Korean government and it is listed as a EN (Endangered) species in Red Data Book of Korea. We analyzed ecological conditions of I. dichotoma habitats based on vegetation properties and soil characteristics. This species which is known to inhabit in grassland adjacent to the ocean of lowlands slope and its population was located at an elevation of 8 m to 11 m. In the study sites, the mean of soil organic matter, total nitrogen and soil pH were 6.16%, 0.234% and 5.39 respectively. Additionally, the genetic variation and structure of three populations were assessed using ISSR (Inter Simple Sequence Repeat) markers. The genetic diversity of I. dichotoma (P = 59.46%, H = 0.206, S = 0.310) at the species level was relatively high. Analysis of molecular variance (AMOVA) showed 82.1% of the total genetic diversity was occurred in within populations and 17.9% variation among populations. Lastly, we developed predicted distribution model based on climate and topographic factors by applying SDMs (Species Distribution Models). Consequently, current status of I. dichotoma habitats is limited with natural factors such as the increase of the coverage rate of the herbs due to ecological succession. Therefore, it is essential to establish in situ and ex situ conservation strategies for protecting natural habitats and to require exploring potential and alternative habitats for reintroduction.

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