• Title/Summary/Keyword: Species distribution model (SDM)

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Trends identification of species distribution modeling study in Korea using text-mining technique (텍스트마이닝을 활용한 종분포모형의 국내 연구 동향 파악)

  • Dong-Joo Kim;Yong Sung Kwon;Na-Yeon Han;Do-Hun Lee
    • Korean Journal of Environmental Biology
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    • v.41 no.4
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    • pp.413-426
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    • 2023
  • Species distribution model (SDM) is used to preserve biodiversity and climate change impact. To evaluate biodiversity, various studies are being conducted to utilize and apply SDM. However, there is insufficient research to provide useful information by identifying the current status and recent trends of SDM research and discussing implications for future research. This study analyzed the trends and flow of academic papers, in the use of SDM, published in academic journals in South Korea and provides basic information that can be used for related research in the future. The current state and trends of SDM research were presented using philological methods and text-mining. The papers on SDM have been published 148 times between 1998 and 2023 with 115 (77.7%) papers published since 2015. MaxEnt model was the most widely used, and plant was the main target species. Most of the publications were related to species distribution and evaluation, and climate change. In text mining, the term 'Climate change' emerged as the most frequent keyword and most studies seem to consider biodiversity changes caused by climate change as a topic. In the future, the use of SDM requires several considerations such as selecting the models that are most suitable for various conditions, ensemble models, development of quantitative input variables, and improving the collection system of field survey data. Promoting these methods could help SDM serve as valuable scientific tools for addressing national policy issues like biodiversity conservation and climate change.

Potential Impact of Climate Change on Distribution of Hedera rhombea in the Korean Peninsula (기후변화에 따른 송악의 잠재서식지 분포 변화 예측)

  • Park, Seon Uk;Koo, Kyung Ah;Seo, Changwan;Kong, Woo-Seok
    • Journal of Climate Change Research
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    • v.7 no.3
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    • pp.325-334
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    • 2016
  • We projected the distribution of Hedera rhombea, an evergreen broad-leaved climbing plant, under current climate conditions and predicted its future distributions under global warming. Inaddition, weexplained model uncertainty by employing 9 single Species Distribution model (SDM)s to model the distribution of Hedera rhombea. 9 single SDMs were constructed with 736 presence/absence data and 3 temperature and 3 precipitation data. Uncertainty of each SDM was assessed with TSS (Ture Skill Statistics) and AUC (the Area under the curve) value of ROC (receiver operating characteristic) analyses. To reduce model uncertainty, we combined 9 single SDMs weighted by TSS and resulted in an ensemble forecast, a TSS weighted ensemble. We predicted future distributions of Hedera rhombea under future climate conditions for the period of 2050 (2040~2060), which were estimated with HadGEM2-AO. RF (Random Forest), GBM (Generalized Boosted Model) and TSS weighted ensemble model showed higher prediction accuracies (AUC > 0.95, TSS > 0.80) than other SDMs. Based on the projections of TSS weighted ensemble, potential habitats under current climate conditions showed a discrepancy with actual habitats, especially in the northern distribution limit. The observed northern boundary of Hedera rhombea is Ulsan in the eastern Korean Peninsula, but the projected limit was eastern coast of Gangwon province. Geomorphological conditions and the dispersal limitations mediated by birds, the lack of bird habitats at eastern coast of Gangwon Province, account for such discrepancy. In general, potential habitats of Hedera rhombea expanded under future climate conditions, but the extent of expansions depend on RCP scenarios. Potential Habitat of Hedera rhombea expanded into Jeolla-inland area under RCP 4.5, and into Chungnam and Wonsan under RCP 8.5. Our results would be fundamental information for understanding the potential effects of climate change on the distribution of Hedera rhombea.

Comparison of Species Distribution Models According to Location Data (위치자료의 종류에 따른 생물종 분포모형 비교 연구)

  • Seo, Chang-Wan;Park, Yu-Ri;Choi, Yun-Soo
    • Journal of Korean Society for Geospatial Information Science
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    • v.16 no.4
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    • pp.59-64
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    • 2008
  • We need to use the strength of each Species Distribution Model(SDM) because presence location data were only collected due to time and economic limitations in Korea. This study investigated and compared GAM(Generalized Additive Model) which is one of presence-absence models with Maxent(Maximum Entropy Model) which is one of presence only models according to location data(presence/absence data). The target species was Fisher(Martes pennanti) which is an endangered species in California, USA. We implemented environmental data such as topography, climate and vegetation, and applied models to sub-regions and study area. The results of this study were as follows. Firstly, GAM which used real presence and absence data was better than GAM which used pseudo-absence data and Maxent which used presence-only data. Secondly, Maxent was better than GAM when presence-only data were used. Lastly, each model which applied to different regions didn't predict other area well due to the difference of habitat environment and over-predicted outside of study area. We need to select an optimal model to predict a suitable habitat according to the type and distribution of location data.

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Analysis and estimation of species distribution of Mythimna seperata and Cnaphalocrocis medinalis with land-cover data under climate change scenario using MaxEnt (MaxEnt를 활용한 기후변화와 토지 피복 변화에 따른 멸강나방 및 혹명나방의 한국 내 분포 변화 분석과 예측)

  • Taechul Park;Hojung Jang;SoEun Eom;Kimoon Son;Jung-Joon Park
    • Korean Journal of Environmental Biology
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    • v.40 no.2
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    • pp.214-223
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    • 2022
  • Among migratory insect pests, Mythimna seperata and Cnaphalocrocis medinalis are invasive pests introduced into South Korea through westerlies from southern China. M. seperata and C. medinalis are insect pests that use rice as a host. They injure rice leaves and inhibit rice growth. To understand the distribution of M. seperata and C. medinalis, it is important to understand environmental factors such as temperature and humidity of their habitat. This study predicted current and future habitat suitability models for understanding the distribution of M. seperata and C. medinalis. Occurrence data, SSPs (Shared Socio-economic Pathways) scenario, and RCP (Representative Concentration Pathway) were applied to MaxEnt (Maximum Entropy), a machine learning model among SDM (Species Distribution Model). As a result, M. seperata and C. medinalis are aggregated on the west and south coasts where they have a host after migration from China. As a result of MaxEnt analysis, the contribution was high in the order of Land-cover data and DEM (Digital Elevation Model). In bioclimatic variables, BIO_4 (Temperature seasonality) was high in M. seperata and BIO_2 (Mean Diurnal Range) was found in C. medinalis. The habitat suitability model predicted that M. seperata and C. medinalis could inhabit most rice paddies.

A Study on Distribution Characteristics of Corylopsis coreana Using SDM (종분포모형을 이용한 히어리 서식지의 분포 특성 연구)

  • Kwon, Hyuksoo;Ryu, Ji-Eun;Seo, Changwan;Kim, Jiyeon;Lim, Dong-Ok;Suh, Min-Hwan
    • Journal of Environmental Impact Assessment
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    • v.21 no.5
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    • pp.735-743
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    • 2012
  • Since the CBD(Conservation on Biological Diversity)'s 10th Conference of the Parties adopted the protocol on access to genetic resources and benefit sharing in Nagoya 2010, the importance of endangered species studies such as habitat distribution, protection and management have been more emerged. Corylopsis coreana, an endangered species in Korea, was isolated nationally and has been damaged by anthropogenic factors. In this paper, we identified the factors affecting C. coreana habitat at the national scale and regional scale using National Survey of Natural Environment and predicted the distribution of C. coreana. Annual precipitation, precipitation of wettest quarter, temperature seasonality and Digital Elevation Model(DEM) were derived as important factors at the national scale, and precipitation of wettest quarter, DEM and solar radiation on spring were identified as important factors at regional scale. Colylopsis distribution was affected by an effect of climate significantly at the national scale, and by additionally the microclimate and topography at regional scale. These findings will be used as the basis on habitat conservation and restoration plan and climate change.

Prediction of Potential Habitat of Japanese evergreen oak (Quercus acuta Thunb.) Considering Dispersal Ability Under Climate Change (분산 능력을 고려한 기후변화에 따른 붉가시나무의 잠재서식지 분포변화 예측연구)

  • Shin, Man-Seok;Seo, Changwan;Park, Seon-Uk;Hong, Seung-Bum;Kim, Jin-Yong;Jeon, Ja-Young;Lee, Myungwoo
    • Journal of Environmental Impact Assessment
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    • v.27 no.3
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    • pp.291-306
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    • 2018
  • This study was designed to predict potential habitat of Japanese evergreen oak (Quercus acuta Thunb.) in Korean Peninsula considering its dispersal ability under climate change. We used a species distribution model (SDM) based on the current species distribution and climatic variables. To reduce the uncertainty of the SDM, we applied nine single-model algorithms and the pre-evaluation weighted ensemble method. Two representative concentration pathways (RCP 4.5 and 8.5) were used to simulate the distribution of Japanese evergreen oak in 2050 and 2070. The final future potential habitat was determined by considering whether it will be dispersed from the current habitat. The dispersal ability was determined using the Migclim by applying three coefficient values (${\theta}=-0.005$, ${\theta}=-0.001$ and ${\theta}=-0.0005$) to the dispersal-limited function and unlimited case. All the projections revealed potential habitat of Japanese evergreen oak will be increased in Korean Peninsula except the RCP 4.5 in 2050. However, the future potential habitat of Japanese evergreen oak was found to be limited considering the dispersal ability of this species. Therefore, estimation of dispersal ability is required to understand the effect of climate change and habitat distribution of the species.

Projecting the Potential Distribution of Abies koreana in Korea Under the Climate Change Based on RCP Scenarios (RCP 기후변화 시나리오에 따른 우리나라 구상나무 잠재 분포 변화 예측)

  • Koo, Kyung Ah;Kim, Jaeuk;Kong, Woo-seok;Jung, Huicheul;Kim, Geunhan
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.19 no.6
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    • pp.19-30
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    • 2016
  • The projection of climate-related range shift is critical information for conservation planning of Korean fir (Abies koreana E. H. Wilson). We first modeled the distribution of Korean fir under current climate condition using five single-model species distribution models (SDMs) and the pre-evaluation weighted ensemble method and then predicted the distributions under future climate conditions projected with HadGEM2-AO under four $CO_2$ emission scenarios, the Representative Concentration Pathways (RCP) 2.6, 4.5, 6.0 and 8.5. We also investigated the predictive uncertainty stemming from five individual algorithms and four $CO_2$ emission scenarios for better interpretation of SDM projections. Five individual algorithms were Generalized linear model (GLM), Generalized additive model (GAM), Multivariate adaptive regression splines (MARS), Generalized boosted model (GBM) and Random forest (RF). The results showed high variations of model performances among individual SDMs and the wide range of diverging predictions of future distributions of Korean fir in response to RCPs. The ensemble model presented the highest predictive accuracy (TSS = 0.97, AUC = 0.99) and predicted that the climate habitat suitability of Korean fir would increase under climate changes. Accordingly, the fir distribution could expand under future climate conditions. Increasing precipitation may account for increases in the distribution of Korean fir. Increasing precipitation compensates the negative effects of increasing temperature. However, the future distribution of Korean fir is also affected by other ecological processes, such as interactions with co-existing species, adaptation and dispersal limitation, and other environmental factors, such as extreme weather events and land-use changes. Therefore, we need further ecological research and to develop mechanistic and process-based distribution models for improving the predictive accuracy.

Prediction of potential habitats and distribution of the marine invasive sea squirt, Herdmania momus

  • Park, Ju-Un;Lee, Taekjun;Kim, Dong Gun;Shin, Sook
    • Korean Journal of Environmental Biology
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    • v.38 no.1
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    • pp.179-188
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    • 2020
  • The influx of marine exotic and alien species is disrupting marine ecosystems and aquaculture. Herdmania momus, reported as an invasive species, is distributed all along the coast of Jeju Island and has been confirmed to be distributed and spread to Busan. The potential habitats and distribution of H. momus were estimated using the maximum entropy (MaxEnt) model, quantum geographic information system (QGIS), and Bio-ocean rasters for analysis of climate and environment(Bio-ORACLE), which can predict the distribution and spread based only on species occurrence data using species distribution model (SDM). Temperature and salinity were selected as environmental variables based on previous literature. Additionally, two different representative concentration pathway (RCP) scenarios (RCP 4.5 and RCP 8.5) were set up to estimate future and potential habitats owing to climate change. The prediction of potential habitats and distribution for H. momus using MaxEnt confirmed maximum temperature as the highest contributor(77.1%), and mean salinity, the lowest (0%). And the potential habitats and distribution of H. momus were the highest on Jeju Island, and no potential habitat or distribution was seen in the Yellow Sea. Different RCP scenarios showed that at RCP 4.5, H. momus would be distributed along the coast of Jeju Island in the year 2050 and that the distribution would expand to parts of the Korea Strait by the year 2100. RCP 8.5, the distribution in 2050 is predicted to be similar to that at RCP 4.5; however, by 2100, the distribution is predicted to expand to parts of the Korea Strait and the East Sea. This study can be utilized as basic data to effectively control the ecological injuries by H. momus by predicting its spread and distribution both at present and in the future.

Prediction of the Suitable Habitats of Marine Invasive Species, Ciona robusta based on RCP Scenarios (RCP 시나리오에 따른 해양교란생물 유령멍게(Ciona robusta)의 서식지 분포 예측)

  • Park, Ju-Un;Hong, Jinsol;Kim, Dong Gun;Yoon, Tae Joong;Shin, Sook
    • Korean Journal of Environmental Biology
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    • v.36 no.4
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    • pp.687-693
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    • 2018
  • The active development of the global marine trade industries has been known to increase the inflows of marine invasive species and harmful organisms into the ecosystem, and the marine ecological disturbances. One of these invasive species, Ciona robusta, has now spread to the Korea Strait, the East Sea, and Jeju Island in connection with the climate change but not the Yellow Sea in Korea. Currently, the spread and distribution of C. robusta is increasingly damaging aquaculture and related facilities. Therefore, this study aims to identify the spread of C. robusta and potential habitats and to secure a data for the prevention of effective management measures due to climate change as well as damage the reduction in future through the prediction of spread. We used environmental variables in BioOracle. Also, the potential habitat and distribution of C. robusta was predicted using MaxEnt, a species distribution model. Two different RCP scenarios(4.5 and 8.5) were specified to predict the future distributions of C. robusta. The results showed that the biggest environmental factor affecting the distribution of C. robusta was the salinity as well as the highest distribution and potential habitats existent in the East Sea and around Jeju Island.

Potential Impact of Climate Change on Distribution of Warm Temperate Evergreen Broad-leaved Trees in the Korean Peninsula (기후변화에 따른 한반도 난대성 상록활엽수 잠재서식지 분포 변화)

  • Park, Seon Uk;Koo, Kyung Ah;Kong, Woo-Seok
    • Journal of the Korean Geographical Society
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    • v.51 no.2
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    • pp.201-217
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    • 2016
  • We accessed the climate change effects on the distributions of warm-evergreen broad-leaved trees (shorten to warm-evergreens below) in the Korean Peninsula (KP). For this, we first selected nine warm-evergreens with the northern distribution limits at mid-coastal areas of KP and climate variables, coldest month mean temperature and coldest quarter precipitation, known to be important for warm-evergreens growth and survival. Next, species distribution models (SDMs) were constructed with generalized additive model (GAM) algorithm for each warm-evergreen. SDMs projected the potential geographical distributions of warm evergreens under current and future climate conditions in associations with land uses. The nine species were categorized into three groups (mid-coastal, southwest-coastal, and southeast-inland) based on their current spatial patterns. The effects of climate change and land uses on the distributions depend on the current spatial patterns. As considering land uses, the potential current habitats of all warm-evergreens decrease over 60%, showing the highest reduction rate for the Kyungsang-inland group. SDMs forecasted the expansion of potential habitats for all warm-evergreens under climate changes projected for 2050 and 2070. However, the expansion patterns were different among three groups. The spatial patterns of projected coldest quarter precipitation in 2050 and 2070 could account for such differences.

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