• Title/Summary/Keyword: Species Comparison

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Comparison of Virulence between Five Strains of Cryptococcus Species Complex in a Rat Model

  • Park, Gyu-Nam;Kim, Sun-Young;Kim, Hye-Ran;Jung, Bo-Kyung;An, Dong-Jun;Hong, Seung-Bok;Chang, Kyung-Soo
    • Biomedical Science Letters
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    • v.24 no.3
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    • pp.183-195
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    • 2018
  • Cryptococcosis, which is caused by the Cryptococcus species complex (including Cryptococcus neoformans and Cryptococcus gattii), is well known as one of the most important medical problems. However, the of the Cryptococcus species complex is still limited to pneumonia and meningitis. In particular, the differences in virulence among the five major serotypes of the Cryptococcus species complex are not fully understood. To elucidate the virulence of the Cryptococcus species complex when it is disseminated hematogenously, rats were infected by different strains of the Cryptococcus species serotype, and their histopathological characteristics were compared after infection. The cumulative mortality ratio of rats infected with serotype B strain was slightly higher than in the other experimental groups. In addition, the average recovery of the Cryptococcus species complex from rats infected with serotype B strain was significantly higher than in the other groups in almost all organ samples except spleen. The recovery of the Cryptococcus species complex was associated with the severity of histopathological lesions, including bleeding, inflammation, and tissue damage in all organs. In rats infected with serotype B strain, the virulence was the most severe, especially in the lungs and liver. These results indicate that the pathophysiology of the Cryptococcus species complex infection differs according to serotype.

Molecular Authentication of Scrophularia herbs by PCR-RFLP Based on rpl-5 Region of Mitochondrial DNA (현삼속 식물의 종판별을 위한 Mitochondrial DNA의 염기서열 및 PCR-RFLP 분석)

  • Lee, Jeong-Hoon;Jo, Ick-Hyun;Lee, Jei-Wan;Park, Chun-Geun;Bang, Kyong-Hwan;Kim, Hong-Sig;Park, Chung-Berm
    • Korean Journal of Medicinal Crop Science
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    • v.18 no.3
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    • pp.173-179
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    • 2010
  • This study describes an efficient approach to the development of DNA markers for use in distinguishing the Scrophularia species that have been used as useful medicinal crops. In order to distinguish Scrophularia species, DNA sequences of rpl-5 region in mitochondrial DNA of Scrophularia species were analysed for detecting sequence variations, and the PCR-RFLP method was applied for developing practicable DNA marker patterns. Several DNA variations were detected by the sequence comparison of rpl-5 region among Scrophularia species. Genetic relationship analysis of Scrophularia species was carried out based on these DNA variations. DNA variations of rpl-5 region were revealed that it was significantly efficient in genetic relationship analysis of Scrophularia species. In addition, Scrophularia species tested in this study were completely discriminated by four polymorphic genotypes by PCR-RFLP combined with Tsp509 I (^AATT) restriction enzyme. Our results suggested that DNA sequence variations of rpl-5 region were sufficiently useful for genetic relationship analysis of Scrophularia species. Polymorphic genotypes by PCR-RFLP using the Tsp509 I enzyme will be useful for discrimination of Scrophularia species as a practicable DNA markers.

Pattern of Change of the Local Butterfly Community in a Rural Area of Southwestern Part of Korea (전남 서남부 농촌지역에 분포하는 나비군집의 변화 양상에 관한 연구)

  • Choi, Sei-Woong;An, Jeong-Seop
    • Korean Journal of Environmental Biology
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    • v.33 no.1
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    • pp.53-62
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    • 2015
  • We surveyed butterfly community in a rural area of the southwestern part of Korea to investigate the changes of species composition and their abundances between 2001~2002 and 2014. The butterfly survey was conducted at the same site using a line transect method. There was a significant decrease of the numbers of species and individuals between 2001~2002 and 2014. We categorized each species based on six ecological traits: habitat type, habitat breadth, food plant type, food plant breadth, number of generation per year and overwintering stage. The comparison of number of species using these ecological traits showed no difference during the 10-yr time intervals. However, the comparison of number of individuals for the ecological traits showed the significant differences except for one trait, overwintering stage. We could suspect that the decrease of butterflies in the study area was resulted from the habitat change. To investigate the causal factors and the changes of butterfly fauna, we need a long-term monitoring of the local butterfly community.

A Taxonomic Review and Nomenclature of the Opuntia ficus-indica (L). Mill. in Jeju Island (제주도 민속식물인 선인장(Opuntia ficus-indica (L.) Mill.)의 분류학적 검토 후 명명)

  • Yang, Young-Soo;Choi, Byoung-Ki;Oh, Hong-Shik
    • Journal of the Korean Institute of Traditional Landscape Architecture
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    • v.38 no.4
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    • pp.68-73
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    • 2020
  • The purpose of this study is to classify species and correct misidentification of cacti (Opuntia) in Jeju area through morphological characteristics comparison. As a result of the study, it was found that Opuntia ficus-indica and O. ficus-indica var. saboten, which has been reported to grow naturally in Jeju Island, is Opuntia stricta. In the morphological comparison of species, it was confirmed that O. stricta showed clear differences in plant size, cladode shape, color of flowers and fruits, and characteristics of areole compared to the existing reported species. Based on the research results, the scientific name of Jeju cactus was corrected as Opuntia stricta, and the Korean name 'Hae-an-sun-in-jang' was newly named. Furthermore, it was suggested that various research literatures and national biodiversity management organizations need to confirm and correct the misidentification of species.

Morphology and phylogenetic relationships of two Antarctic strains within the genera Carolibrandtia and Chlorella (Chlorellaceae, Trebouxiophyceae)

  • Hyunsik Chae;Eun Jae Kim;Han Soon Kim;Han-Gu Choi;Sanghee Kim;Ji Hee Kim
    • ALGAE
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    • v.38 no.4
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    • pp.241-252
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    • 2023
  • The genera Carolibrandtia and Chlorella have been described as small green algae with spherical cell shapes that inhabit various environments. Species of these genera are often difficult to identify because of their simple morphology and high phenotypic plasticity. We investigated two small coccoid strains from Antarctica based on morphology, molecular phylogeny by two alignment methods which have been applied to previous phylogenetic studies of the genus Chlorella, and comparison of the secondary structures of nuclear small subunit (SSU) and internal transcribed spacer (ITS) rDNA sequences. Light microscopy of two strains revealed spherical cells containing chloroplasts with pyrenoids, and the morphological characteristics of the strains were nearly identical to those of other Chlorella species. However, based on the phylogenetic analyses of nuclear SSU and ITS rDNA sequences, it was determined that the Antarctic microalgal strains belonged to two genera, as the Chlorella and Carolibrandtia. In addition, the secondary structures of the SSU and ITS2 sequences were analyzed to detect compensatory base changes (CBCs) that were used to identify and describe the two strains. A unique CBC in the SSU rDNA gene was decisive for distinguishing strain CCAP 211/45. The ITS2 rDNA sequences for each strain were compared to those obtained previously from other closely related species. Following the comparison of morphological and molecular characteristics, we propose KSF0092 as a new species, Chlorella terrestris sp. nov., and the reassignment of the strain Chlorella antarctica CCAP 211/45 into Carolibrandtia antarctica comb. nov.

Comparison of Characteristics of Ganoderma lucidum According to Geographical Origins : Consideration of Morphological Characteristics(II)

  • Kim, Hong-Kyu;Seo, Geon-Sik;Kim, Hong-Gi
    • Mycobiology
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    • v.29 no.2
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    • pp.80-84
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    • 2001
  • Nine species of genus Ganoderma different in cultural characteristics each other were separated by histo-anatomical differences. Differences among the species and geographic distribution of G. lucidum were also analyzed to provide the criteria for the classification of Korean cultivation or wild type strains. Korean cultivation and wild type strains were quiet different from other species as well as Taiwan and North American G. lucidum strains in histo-anatomical traits of Ganoderma. Pore color of Korean G. lucidum strains was less brown than those of Taiwan and North American strains. Shapes of pores were round or circular in Korean strains but ellipsoidal or angular in Taiwan or North American strains. Pore numbers of Korean strains were more than those($4{\sim}6/mm$) of Taiwan or North American strains. Hardness of the pileus of Korean strains was much more than that of Taiwan or North American strains. Such characteristics of Korean strains were different from those of other species of Ganoderma. Korean G. lucidum strains could be classified into the other group because they had many different traits in growth characteristics of fruiting bodies and histo-anatomical characteristics from those of Taiwan or North American G. lucidum and other species of G. lucidum complex.

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The Comparison of Phytochemical Components from the Berry of Acanthopanax Species (오가피속 식물 열매의 식물화학 성분 비교)

  • An, Hye Jung;Nam, Yun Min;Yang, Byung Wook;Park, Jong Dae;Yook, Chang Soo;Kim, Hyoung Chun;Ko, Sung Kwon
    • Korean Journal of Pharmacognosy
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    • v.48 no.1
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    • pp.5-9
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    • 2017
  • This study was carried out to obtain the basic information that can be used to index Acanthopanax in eleven species of China and Korea. The phytochemical components from the berry of Acanthopanax species, were measured by the HPLC analysis. Protocatechuic acid, eleutheroside B, eleutheroside E, scopolin, rutin, hyperoside, chiisanoside, oleanolic acid were found in ethanol extracts from the berry of Acanthopanax species. Total phenolic compound of Acanthopanax sessiliflorum f. chungbuensis berry (0.682%) was about seven times higher than those of Acanthopanax divaricatus f. distigmatis berry (0.091%). As a result, the order of the eleutheroside E content was 1) Acanthopanax sessiliflorum f. chungbuensis (0.554%), 2) A. divaricatus var. albeofructus (0.501%), 3) A. divaricatus f. flavi-flos (0.452%). And also, the order of the chiisanoside content was 1) Acanthopanax senticosus var. subinermis (8.434%), 2) A. seoulense (0.94%), 3) A. divaricatus f. flavi-flos (0.798%).

First Record of Monstrilloid Copepods in Korea: Description of a New Species of the Genus Cymbasoma (Monstrilloida, Monstrillidae)

  • Chang, Cheon-Young
    • Animal Systematics, Evolution and Diversity
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    • v.28 no.2
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    • pp.126-132
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    • 2012
  • A new monstrilloid species belonging to the genus $Cymbasoma$ is described as a preliminary result from nocturnal surveys using a light trap on the east and south coasts of South Korea. Monstrilloid copepods are first recorded in South Korea. $Cymbasoma$ $striifrons$ n. sp. resembles $C.$ $striatum$ (Isaac, 1974) and $C.$ $tumorifrons$ Isaac, 1975 in sharing the character combination of transverse striations on forehead, somewhat small body (generally slightly less or longer than 1 mm), single lobed leg 5 bearing a short medial seta in female, and smooth lateral margin of anal somite without notch and wrinkles. However, $C.$ $striifrons$ n. sp. differs from $C.$ $striatum$ by relatively short and swollen cephalothorax, and rather strongly wrinkled genital somite. $Cymbasoma$ $striifrons$ n. sp. is also distinguished from $C.$ $tumorifrons$ in lacking a rounded protuberance on anterior margin of ventral surface and by relatively short cephalothorax and the number of ventral nipple-like processes on cephalothorax. Herein the new species is described and illustrated, with some comments on the morphological comparison with its allied species.

Analytical Solution of Multi-species Transport Equations Coupled with a First-order Reaction Network Under Various Boundary Conditions (다양한 경계조건을 가진 일차 반응 네트워크로 결합된 다종 오염물 거동 해석해)

  • Suk, Hee-Jun;Chae, Byung-Gon
    • Journal of Soil and Groundwater Environment
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    • v.16 no.6
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    • pp.46-57
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    • 2011
  • In this study, analytical solution of multip-species transport equations coupled with a first-order reaction network under constant concentration boundary condition or total flux boundary condition is obtained using similarity transformation approach of Clement et al. (2000). The study shows the schematic process about how multi-species transport equations with first-order sequential reaction network is transformed through the similarity transformation approach into independent and uncoupled single species transport equations with first-order reaction. The analytical solution was verified through the comparison with popular commercial programs such as 2DFATMIC and RT3D. The analytical solution can be utilized in nuclear waste sites where radioactive contaminants and their daughter products occur and in industrial complex cities where chlorinated solvent such as PCE, TCE, and its biodegradation products produces. In addition, it can help the verification of the developed numerical code.

Comparison of Genetic Diversity and Population Structure of Kalopanax pictus (Araliaceae) and its Thornless Variant Using RAPD

  • Huh, Man-Kyu;Jung, Sang-Duk;Moon, Heung-Kyu;Kim, Sea-Hyun;Sung, Jung-Sook
    • Korean Journal of Medicinal Crop Science
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    • v.13 no.2
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    • pp.69-74
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    • 2005
  • Kalopanax pictus is a long-lived woody species mostly distributed in East Asia. K. pictus has been regarded as medically and ecologically important species in Korea. Thornless castor aralia variant, local name 'Cheongsong' is an endemic to Cheongsong province in Korea. Random amplified polymorphic DNA (RAPD) was used to investigate the genetic variation and structure of Korean populations of two species. A high level of genetic variation was found in six K. pictus populations. Twelve primers revealed 49 loci, of which 29 were polymorphic (59.2%). Nei's gene diversity for K.pictus and K. pictus variant were 0.119 and 0.098, respectively. Mean of genetic diversity in K. pictus was higher than average values for species with similar life history traits. The asexual and sexual reproduction, perennial habitat, and longevity are proposed as possible factors contributing to high genetic diversity. An indirect estimate of the number of migrants per generation (Nm=0.857) indicated that gene flow was not extensive among Korean populations of K.pictus. It is suggested that the isolation of geographical distance and reproductive isolation between K.pictus and K.pictus variant populations may have played roles in shaping the population structure of this species.