• Title/Summary/Keyword: Speciation analysis

Search Result 92, Processing Time 0.028 seconds

Discrepancies between Mitochondrial DNA and AFLP Genetic Variation among Lineages of Sea Slaters Ligia in the East Asian Region

  • Kang, Seunghyun;Jung, Jongwoo
    • Animal Systematics, Evolution and Diversity
    • /
    • v.36 no.4
    • /
    • pp.347-353
    • /
    • 2020
  • Although sea slaters Ligia have a significant role in rocky shore habitats, their taxonomic entities have not been clearly understood. In this study, we investigated whether genetic variation inferred from a nuclear genetic marker, namely amplified fragment length polymorphism (AFLP), would conform to that of a mitochondrial DNA marker. Using both the mitochondrial DNA marker and the AFLP marker amplified by the six selective primer sets, we analyzed 95 Ligia individuals from eight locations from East Asia. The direct sequencing of mitochondrial 16S rRNA gene revealed three distinct genetic lineages, with 9.8-11.7 Kimura 2-parameter genetic distance. However, the results of AFLP genotyping analysis with 691 loci did not support those of mitochondrial DNA, and revealed an unexpectedly high proportion of shared polymorphisms among lineages. The inconsistency between the two different genetic markers may be explained by difference in DNA evolutionary history, for example inheritance patterns, effective population size, and mutation rate. The other factor is a possible genomic island of speciation, in that most of the genomic parts are shared among lineages, and only a few genomic regions have diverged.

Study on Particulate Pollutant Reduction Characteristics of Vegetation Biofilters in Underground Subway Stations (지하역사내 식생바이오필터의 입자상 오염물질 저감특성 연구)

  • Kim, Tae Han;Oh, Ji Eun;Kim, Mi Ju
    • Journal of the Semiconductor & Display Technology
    • /
    • v.21 no.4
    • /
    • pp.99-105
    • /
    • 2022
  • Public attention to the indoor environment of underground subway stations, which is a representative multi-use facility, has been increasing along with the increase in indoor activities. In underground stations, fine iron oxide, which affects the health of users, is generated because of the friction between wheels and rails. Among particulate pollutant reduction technologies, plants have been considered as a non-chemical air purification method, and their effects in reducing certain chemical species have been identified in previous studies. The present study aimed to derive the total quantitative and qualitative reduction effects of a bio-filter system comprising air purifying plants, installed in an underground subway station. The experiment proceeded in two ways. First, PM(particulate matter) reduction effect by vegetation biofilter was monitored with the IAQ(indoor air quality) station. In addition, chemical speciation analysis conducted on the samples collected from the experimental and control areas where plants and irrigation using SEM-EDS(scanning electron microscopy-energy dispersive X-ray spectroscopy). This study confirmed the effect of the vegetation bio-filter system in reducing the accumulation of particulate pollutants and transition and other metals that are harmful to the human body.

Determination of Dibutyltin in Sediments Using Isotope Dilution Liquid Chromatography-Inductively Coupled Plasma Mass Spectrometry

  • Yim, Yong-Hyeon;Park, Ji-Youn;Han, Myung-Sub;Park, Mi-Kyung;Kim, Byung-Joo;Lim, Young-Ran;Hwang, Eui-Jin;So, Hun-Young
    • Bulletin of the Korean Chemical Society
    • /
    • v.26 no.3
    • /
    • pp.440-446
    • /
    • 2005
  • A method is described for the determination of dibutyltin (DBT) in sediment by isotope dilution using liquid chromatography inductively-coupled plasma/mass spectrometry (LC-ICP/MS). To achieve the highest accuracy and precision, special attentions are paid in optimization and evaluation of overall processes of the analysis including extraction of analytes, characterization of the standards used for calibration and LC-ICP/MS conditions. An approach for characterization of natural abundance DBT standard has been developed by combining inductively-coupled plasma/optical emission spectrometry (ICP/OES) and LC-ICP/MS for the total Sn assay and the analysis of Sn species present as impurities, respectively. An excellent LC condition for separation of organotin species was found, which is suitable for simultaneous DBT and tributyltin (TBT) analysis as well as impurity analysis of DBT standards. Microwave extraction condition was also optimized for high efficiency while preventing species transformation. The present method determines the amount contents of DBT in sediments with expanded uncertainty of less than 5% and its result shows high degree of equivalence with reference values of an international inter-comparison and a certified reference material (CRM) within stated uncertainties.

Genetic Relationships among the Poplars of Section Leuce (Genus Populus) revealed by RAPD Marker Analysis (RAPD 표식자(標識者) 분석(分析)에 의한 사시나무속(屬) Leuce절(節) 포플러의 유연관계(類緣關係))

  • Hong, Kyung-Nak;Hyun, Jung Oh;Hong, Yong Pyo
    • Journal of Korean Society of Forest Science
    • /
    • v.87 no.2
    • /
    • pp.153-163
    • /
    • 1998
  • Genetic relationships of some poplars in the section Leuce, including 5 species and 11 clones of Populus alba${\times}$glandulosa, were investigated on the basis of RAPD marker analysis. Twenty-two of the 88 arbitrary 10-mer primers, showed reproducible amplification in the preliminary experiment with 6 samples, were used for PCR and generated a total of 181 RAPD markers. Genetic relationships among the analyzed samples were tested by two phenetic methods of the UPGMA and the neighbor-joining, which revealed the close genetic relationship between P. glandulosa and P. alba. And the close genetic relationship between P. glandulosa and P. davidiana was ascertained by the principal component analysis. Based on the observation of the close genetic relationship between them, it was deduced that P. glandulosa might be originated by the saltational speciation caused by the hybridization between P. alba and P. davidiana in nature.

  • PDF

Simultaneuous Determination of As(III) and As(V) in Disused Mine Tailing Samples by Hydride Generation-Inductively Coupled Plasma-Atomic Emission Spectrometry (수소화물 발생-유도결합 플라스마 원자 방출 분광법을 이용한 폐광산 광미 시료 중의 As(III)와 As(V)의 동시 정량)

  • Kim, Sun-Tae;Lim, Yoo-Ree;Park, Kyung-Su;Chung, Jin-Ho
    • Analytical Science and Technology
    • /
    • v.13 no.2
    • /
    • pp.189-193
    • /
    • 2000
  • Arsenic (III) and arsenic (V) in disused mine tailing samples have been determined simutaneuously by hydride generation inductively coupled plasma atomic emission spectrometry (HG-ICP-AES). Total arsenic was determined using 2% $NaBH_4$ and 6 M HCl after prereduction of As(V) to As(III) with) 1M KI. Arsenic (III) was determined selectively using citrate/citric acid buffer with range of pH 5-6, it was determined by HG-ICP-AES. Arsenic (V) can be evaluated by the differences. According to the results, arsenic (V) was over 90% among the total arsenic extracted from disused mine tailing samples.

  • PDF

Chemical Speciation of Arsenic in the Water System from Some Abandoned Au-Ag Mines in Korea (국내 폐금은광산 주변 수계내의 As의 화학적 특성)

  • 이지민;이진수;전효택
    • Economic and Environmental Geology
    • /
    • v.36 no.6
    • /
    • pp.481-490
    • /
    • 2003
  • The objectives of this study are (1) to determine the extent and degree of As contamination of the water and sediments influenced by mining activity of the abandoned Au-Ag mines, (2) to examine As speciation In contaminated water, (3) to monitor variation of As contamination in water system throughout the dry and wet seasons, and (4) to investigate the As chemical form in the sediments through the sequential extraction analyses. Natural water(mine water, surface water and groundwater) and sediments were collected in six abandoned Au-Ag mine(Au-bearing quartz veins) areas. The contamination level of As in mine water of the Dongil(524${\mu}m$/L) is more higher than the tolerance level(500 ${\mu}m$/L) for waste water of mine area in Korea. Elevated levels of As in stream water were also found in the Dongil(range of 63.7∼117.6 ${\mu}m$/L.) and Gubong(range of 56.1∼62.9 ${\mu}m$/L) mine areas. Arsenic contamination levels in groundwater used by drinking water were more significant in the Dongil(11.3∼63.5 ${\mu}m$/L), Okdong(0.2∼68.9 ${\mu}m$/L) and Gubong(2.0∼101.0${\mu}m$/L) mine areas. Arsenate[As(V), $H_2AsO_4^-$] is more dominant than arsenite[As(III), $H_3AsO_3$] in water system of the most mine areas. The concentration ratios of As(III) to As(total), however, extend to the 95% in stream water of the Okdong mine area and 70∼82% in groundwater of the Okdong and Dongjung mine areas. As a study of seasonal variation in the water system, relatively high levels of As from the dongil mine area were found in April rather than in September. Sequential extraction analysis showed that As was predominantly present as coprecipitated with Fe hydroxides from sediment samples of the Dongjung and Gubong mine(35.9∼40.5%), which indicates its possibility of re-extraction and inducing elevated contamination of As in the reductive condition. In sediments from the Dongil, Okdong and Hwachon mine area, high percentage(55.2∼83.4%) of As sulfide form was found.

Relationship of diploid East Aisan Taraxacum Wiggers using the capitulum morphological character (형태형질에 의한 동아시아산 민들레속 2배체 식물의 유연관계)

  • Lee, Kyung Hwa;Yang, Ji Young;Morita, Tatsuyoshi;Ito, Motomi;Pak, Jae-Hong
    • Korean Journal of Plant Taxonomy
    • /
    • v.34 no.2
    • /
    • pp.153-166
    • /
    • 2004
  • Genus Taraxacum propagated through diploid sexual reproduction and polyploid agamospermy. The cluster analysis of Korean(2 species, 4 population), Japanese (2 species 4 taxa 6 population) and Taiwanese (1 species, 3 population) Taraxacum species using 15 measured capitulum morphological characters was conducted to study the speciation of diploid Taraxacum in East Asia. We measured 15 capitulum morphological characters including length of capitulum, length and shape of outer-involucre, corniculate appandage. Within one population, these characters were very various and were overlapped. The result of cluster analysis using morphological character showed that all species were clustered into four groups (Korean species & T. japonicum group, T. platycarpum subspecies group, T. platycarpum subsp. hodense group, T. formosanum group). Korean species, T. hallaisanense (diploid) and T. ohiwanum (diploid, triploid) were clustered into T. japonicum that was occurred in Kansai provinces of Japan. Therefore, we could infer that Korean species was closely related to Japanese T. japonicum of Japanese species.

Dispersion, Speciation and Adsorption Treatment of Heavy Metals in the Vicinity of the Shi-Heung Cu-Pb-Zn Mine (시흥 Cu-Pb-Zn 광산 주변에서의 중금속원소들의 분산 및 존재형태와 흡착처리)

  • Hwang, Ho Song;Chon, Hyo Taek
    • Economic and Environmental Geology
    • /
    • v.28 no.5
    • /
    • pp.455-467
    • /
    • 1995
  • In order to investigate the dispersion patterns and speciations of Cu, Pb, Zn and Cd in soils, stream sediments and stream waters, geochemical studies of soil, stream sediment and stream water samples collected in the vicinity of the Shi-Heung Cu-Pb-Zn mine was carried out Cation exchange capacity measurement, size analysis, X-ray diffraction analysis and batch test were performed to select applicable soil for adsorption treatment The average content of Cu, Pb, Zn and Cd in soils collected from tailings and ore dressing plant is 1084 ppm, 2292 ppm, 3512 ppm and 29.2 ppm, respectively, and therefore, tailings and ore dressing plant site may be the major contamination sources in this study area. The mean content of Cu, Pb, Zn and Cd in stream sediments is extremely high up to 794 ppm, 1633 ppm, 2946 ppm and 25.2 ppm, respectively. Tailing particles and heavy metal ions are dispersed along the tributary system. Results from the sequential extraction analysis indicate; (1) most of Cu is bound to organic matters and sulphides, (2) fraction of Pb is mainly bound to Fe and Mn oxides. Most of Zn is largely bound to Fe and Mn oxides and residual fraction. Ion exchangeable fraction of Cd is relatively higher than those of Cu, Pb and Zn. Batch test on soils collected from the kaolinite and/or pyrophyllite mines and from the control areas was carried out to select an applicable soil samples for adsorption treatment The sample, S10, collected from the control area 2 (clay content 33.2%) shows the highest $K_d$ (distribution coefficient). Organic content in soils and several clay minerals shows relatively good correlation with $K_d$. It means that applicable soils for adsorption treatment of heavy metals show high organic and clay content.

  • PDF

Phylogeny and Speciation of Entomobryoidea (Collembola, Insecta) from Korea (한국산 털보톡토기상과 (톡토기목, 곤충강)의 계통과 종분화)

  • 박경화;김진태;이병훈
    • Animal Systematics, Evolution and Diversity
    • /
    • v.12 no.2
    • /
    • pp.121-136
    • /
    • 1996
  • In order to understand affinities and phylogeny of three families of the Superfamily Entomobryoidea allozyme analysis was performed with three species presumably representing each family, in addition to four species belonging to the neighboring Superfamily Poduroidea together. Electrophoresis for this purpose produced data for calculating allele frequency and enabled to obtain genetic distance and to depict dendrograms as well. The species of Isotomidae, Entomobryidae and Tomoceridae were clustered together whereas those of Hypogastruridae, Onychiuridae and Neanuridae were grouped as monophylies, respectively. Even though Tomoceridae and Entomobryidae were brought together they are considered complete families by showing high genetic distance value between them, thus supporting the hypothesis on their affinity among others. Gulgastrura reticulosa has been revealed to be separated from Hypogastruridae by being clustered rather with Onychiuridae. However, its high genetic distance value suggests the status as an independent family. The present result agreed with the phylogeny of Suborder Arthropleona divided into two Superfamilies mentioned above as in conventional systematics and also when compared with analysis of data of their morphological characters as well as 18S rDNA performed and published elsewhere by the present writers.

  • PDF

Introducing SPARTAN Instrument System for PM Analysis (PM 관측을 위한 스파르탄 시스템)

  • Sujin Eom;Sang Seo Park;Jhoon Kim;Seoyoung Lee;Yeseul Cho;Seungjae Lee;Ehsan Parsa Javid
    • Atmosphere
    • /
    • v.33 no.3
    • /
    • pp.319-330
    • /
    • 2023
  • As the need for PM type observation increases, Surface Particulate Matter Network (SPARTAN), PM samplers analyzes aerosol samples for PM mass concentration and chemical composition, were recently installed at two sites: Yonsei University at Seoul and Ulsan Institute of Science and Technology (UNIST) at Ulsan. These SPARTAN filter samplers and nephelometers provide the PM2.5 mass concentration and chemical speciation data with aerosol type information. We introduced the overall information and installation of SPARTAN at the field site in this study. After installation and observation, both Seoul and Ulsan sites showed a similar time series pattern with the daily PM2.5 mass concentration of SPARTAN and the data of Airkorea. In particular, in the case of high concentrations of fine particles, daily average value of PM2.5 was relatively well-matched. During the Yonsei University observation period, high concentrations were displayed in the order of sulfate, black carbon (BC), ammonium, and calcium ions on most measurement days. The case in which the concentration of nitrate ions showed significant value was confirmed as the period during which the fine dust alert was issued. From the data analysis, SPARTAN data can be analyzed in conjunction with the existing urban monitoring network, and it is expected to have a synergetic effect in the research field. Additionally, the possibility of being analyzed with optical data such as AERONET is presented. In addition, the method of installing and operating SPARTAN has been described in detail, which is expected to help set the stage for the observation system in the future.