• Title/Summary/Keyword: Software tool

Search Result 2,132, Processing Time 0.03 seconds

Identification of Hub Genes in the Pathogenesis of Ischemic Stroke Based on Bioinformatics Analysis

  • Yang, Xitong;Yan, Shanquan;Wang, Pengyu;Wang, Guangming
    • Journal of Korean Neurosurgical Society
    • /
    • v.65 no.5
    • /
    • pp.697-709
    • /
    • 2022
  • Objective : The present study aimed to identify the function of ischemic stroke (IS) patients' peripheral blood and its role in IS, explore the pathogenesis, and provide direction for clinical research progress by comprehensive bioinformatics analysis. Methods : Two datasets, including GSE58294 and GSE22255, were downloaded from Gene Expression Omnibus database. GEO2R was utilized to obtain differentially expressed genes (DEGs). Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis of DEGs were performed using the database annotation, visualization and integrated discovery database. The protein-protein interaction (PPI) network of DEGs was constructed by search tool of searching interactive gene and visualized by Cytoscape software, and then the Hub gene was identified by degree analysis. The microRNA (miRNA) and miRNA target genes closely related to the onset of stroke were obtained through the miRNA gene regulatory network. Results : In total, 36 DEGs, containing 27 up-regulated and nine down-regulated DEGs, were identified. GO functional analysis showed that these DEGs were involved in regulation of apoptotic process, cytoplasm, protein binding and other biological processes. KEGG enrichment analysis showed that these DEGs mediated signaling pathways, including human T-cell lymphotropic virus (HTLV)-I infection and microRNAs in cancer. The results of PPI network and cytohubba showed that there was a relationship between DEGs, and five hub genes related to stroke were obtained : SOCS3, KRAS, PTGS2, EGR1, and DUSP1. Combined with the visualization of DEG-miRNAs, hsa-mir-16-5p, hsa-mir-181a-5p and hsa-mir-124-3p were predicted to be the key miRNAs in stroke, and three miRNAs were related to hub gene. Conclusion : Thirty-six DEGs, five Hub genes, and three miRNA were obtained from bioinformatics analysis of IS microarray data, which might provide potential targets for diagnosis and treatment of IS.

A Comparative Bibliometric Analysis and Visualization of Indian and South Korean Library and Information Science Research Publications During 2001-2020

  • Kappi, Mallikarjun;Biradar, B.S.
    • International Journal of Knowledge Content Development & Technology
    • /
    • v.12 no.4
    • /
    • pp.67-94
    • /
    • 2022
  • The paper aims to present a comparative analysis of scholarly research output in the fields of Library and Information Science (LIS) in India and South Korea. The Web of Science database was used to retrieve the bibliographic data of the Indian and South Korean LIS published documents during 2001-2020 and the indicators were included in the analysis: research productivity, publication-quality, most prolific authors, institutions and journals, "Annual Growth Rate (AGR)", "Compound Annual Growth Rate (CAGR)", "Relative Growth Rate (RGR)", and "Doubling Time (DT)". All types of documents such as articles, conference papers, book reviews, corrections, editorial materials, so on were included in the study. MS Excel, VOS viewer, and bibliometrix (R-tool) software were used for tabulation and mapping. The results show that South Korea placed the top in the overall output of LIS research publications during the last two decades. The Indian LIS research output, Annual Growth Rate (AGR), and Compound Annual Growth Rate (CAGR) were good compared to South Korean LIS publications. In addition, the South Korean LIS researchers' output has increased rapidly in terms of publications, citations, average citations. Gangan Prathap (India), Seyoung Lee, and Heejin Lee (SK) are the most prolific authors; Indian Institute Technology, Delhi and Yonsei University, Seoul are the most prolific institutions; and the Scientometrics journal was the most preferred journal by the Indian and South Korean LIS researchers during the study period. The results of this study are useful to administrators, policymakers, and academics. In addition, the scope of this study might include looking at research published by LIS scholars in India and South Korea, as well as examining all types of academic publications.

Proposal of Public Data Quality Management Level Evaluation Domain Rule Mapping Model

  • Jeong, Ha-Na;Kim, Jae-Woong;Chung, Young-Suk
    • Journal of the Korea Society of Computer and Information
    • /
    • v.27 no.12
    • /
    • pp.189-195
    • /
    • 2022
  • The Korean government has made it a major national task to contribute to the revitalization of the creative economy, such as creating new industries and jobs, by encouraging the private opening and utilization of public data. The Korean government is promoting public data quality improvement through activities such as conducting public data quality management level evaluation for high-quality public data retention. However, there is a difference in diagnosis results depending on the understanding and data expertise of users of the public data quality diagnosis tool. Therefore, it is difficult to ensure the accuracy of the diagnosis results. This paper proposes a public data quality management level evaluation domain rule mapping model applicable to validation diagnosis among the data quality diagnosis standards. This increases the stability and accuracy of public data quality diagnosis.

Correlation between the Korean pork grade system and the amount of pork primal cut estimated with AutoFom III

  • Park, Yunhwan;Ko, Eunyoung;Park, Kwangwook;Woo, Changhyun;Kim, Jaeyoung;Lee, Sanghun;Park, Sanghun;Kim, Yun-a;Park, Gyutae;Choi, Jungseok
    • Journal of Animal Science and Technology
    • /
    • v.64 no.1
    • /
    • pp.135-142
    • /
    • 2022
  • It is impossible to know the amount of pork primal cut by pig carcass grade which is determined only by carcass weight and backfat thickness in the Korean Pig Carcass System. The aim of this study was to investigate the correlation between the pig carcass grade and the amount of pork primal cut estimated with AutoFom III. A total of 419,321 Landrace, Yorkshire, and Duroc (LYD) pigs were graded with the Korean Pig Carcass Grade System. Amounts of belly, neck, loin, tenderloin, spare ribs, shoulder, and ham were estimated with AutoFom III. Regression equations for seven primal cuts according to each grade were derived. There were significant differences among the three carcass grades due to heteroscedasticity variance (p < 0.0001). Three regression equations were derived from AutoFom III estimation of primal cuts according to carcass grades. The coefficient of determination of the regression equation was 0.941 for grade 1+, 0.982 for grade 1, and 0.993 for grade 2. Regression equations obtained from this study are suitable for AutoFom III software, a useful tool for the analysis of each pig carcass grade in the Korean Pig Carcass Grade System. The high reliability of predicting the amount of primal cut with AutoFom III is advantageous for the management of slaughterhouses to optimize their product sorting in Korea.

The Effectiveness of Collaborative Learning in SW Education based on Metaverse Platform (메타버스 기반 협력적 소통 SW 교육 프로그램의 효과)

  • Son, Jungmyoung;Lee, Sihoon;Han, Jeonghye
    • Journal of The Korean Association of Information Education
    • /
    • v.26 no.1
    • /
    • pp.11-22
    • /
    • 2022
  • The educational environment, where the change to blended learning and AI convergence education through non-face-to-face is accelerating, is based on the cultivation of digital literacy. This study attempted to verify the effectiveness of future competencies by creating a collaborative SW education program on the metaverse platform that emerged by supplementing the problems through non-face-to-face. Twenty programs on how to design and create software were organized for small-scale elementary classes in the metaverse. In order to verify the effectiveness 4C competency tool presented as future educational competency was selected, and homogeneity test for the experimental group and t-test were conducted. The results showed the SW education programs based on metaverse was effective in improving collaborative communication skills, confirming the possibility of SW education through blended learning.

Automatic Adaptation Based Metaverse Virtual Human Interaction (자동 적응 기반 메타버스 가상 휴먼 상호작용 기법)

  • Chung, Jin-Ho;Jo, Dongsik
    • KIPS Transactions on Software and Data Engineering
    • /
    • v.11 no.2
    • /
    • pp.101-106
    • /
    • 2022
  • Recently, virtual human has been widely used in various fields such as education, training, information guide. In addition, it is expected to be applied to services that interact with remote users in metaverse. In this paper, we propose a novel method to make a virtual human' interaction to perceive the user's surroundings. We use the editing authoring tool to apply user's interaction for providing the virtual human's response. The virtual human can recognize users' situations based on fuzzy, present optimal response to users. With our interaction method by context awareness to address our paper, the virtual human can provide interaction suitable for the surrounding environment based on automatic adaptation.

Purchase and Acquisition Order System for sharing on factory (공유 온 팩토리 서비스를 위한 수발주 시스템)

  • Youn-Kyoung Seo
    • Journal of Advanced Navigation Technology
    • /
    • v.27 no.1
    • /
    • pp.146-153
    • /
    • 2023
  • In accordance with the industrial convergence regulation sandbox decision promoted by the Ministry of Trade, Industry and Energy, the "machine tool sharing service in the factory" applied for by MyMaker Co., Ltd., an industry-academia cooperation company, was granted a demonstration exception. While implementing this, in a situation where the ordering service part had to be developed as software, the company's domain problems were identified and analyzed, procedures were established, and a system was designed that met the related requirements. As a joint research and development project to solve the difficulties of the LINC+ industry, the order-to-order system was finally developed for shared factory services. In accordance with the procedure and requirements analysis, the planning, design, prototyping, and implementation production stages were carried out. Finally, it was confirmed that the final development contents were well implemented according to the requirements, and the resolution of the difficulties was confirmed through functional verification demonstrations.

Effectiveness of the Shugan Jieyu Capsule against Psychiatric Symptoms in Epilepsy: a protocol for systematic review and meta-analysis

  • Sejin Kim;Yunna Kim;Seung-Hun Cho
    • Journal of Pharmacopuncture
    • /
    • v.26 no.1
    • /
    • pp.38-43
    • /
    • 2023
  • Objectives: Psychiatric symptoms in epilepsy are very common, and the most common symptoms are depression, insomnia, and anxiety. These symptoms not only lower the quality of life of epilepsy patients, but also elevate the risk of epileptic seizures. There are no specific criteria for the available antiepileptic drugs to ameliorate these symptoms in patients with epilepsy, and there is a lack of evidence to support the efficacy and safety of existing drugs. The Shugan Jieyu capsule (SJC) is a traditional herbal medicine composed of Acanthopanax senticosus and Hypericum perforatum and is reported to be effective in relieving psychiatric symptoms. The purpose of this study was to assess the efficacy of SJC as a treatment for psychiatric symptoms in epilepsy patients. Methods: Electronic databases will be investigated for publications in English, Korean, Japanese, and Chinese. The participants of the study are epilepsy patients with psychiatric symptoms diagnosed using any validated criteria. All types of controls will be compared-placebo, conventional treatments, and no treatment-to groups treated with SJC or modified SJC. We will measure the degree of improvement in psychiatric symptoms and check epileptic symptoms, such as the frequency of seizures. The study selection and data extraction will be performed by two independent reviewers, who will also assess methodological quality using the risk-of-bias tool by Cochrane. We will use Review Manager software (RevMan) to carry out all statistical analyses. Results: This systematic review and meta-analysis will be performed in accordance with the PRISMA-P statement. Conclusion: This systematic review is the first study to assess the efficacy and safety of SJC for the treatment of psychiatric symptoms in epilepsy. We expect that this study will provide clinically applicable evidence for patients with epilepsy when selecting drug treatments.

Healthy lifestyle interventions for childhood and adolescent cancer survivors: a systematic review and meta-analysis

  • Kyung-Ah Kang;Suk Jung Han;Jiyoung Chun;Hyun-Yong Kim;Yerin Oh;Heejin Yoon
    • Child Health Nursing Research
    • /
    • v.29 no.2
    • /
    • pp.111-127
    • /
    • 2023
  • Purpose: This study investigated the effects of healthy lifestyle interventions (HLSIs) on health-related quality of life (HR-QoL) in childhood and adolescent cancer survivors (CACS). Methods: Major databases were searched for English-language original articles published between January 1, 2000 and May 2, 2021. Randomized controlled trials (RCTs) and non-RCTs were included. Quality was assessed using the revised Cochrane risk-of-bias tool, and a meta-analysis was conducted using RevMan 5.3 software. Results: Nineteen studies were included. Significant effects on HR-QoL were found for interventions using a multi-modal approach (exercise and education) (d=-0.46; 95% confidence interval [CI]=-0.84 to -0.07, p=.02), lasting not less than 6 months (d=-0.72; 95% CI=-1.15 to -0.29, p=.0010), and using a group approach (d=-0.46; 95% CI=-0.85 to -0.06, p=.02). Self-efficacy showed significant effects when HLSIs provided health education only (d=-0.55; 95% CI=-0.92 to -0.18; p=.003), lasted for less than 6 months (d=-0.40; 95% CI=-0.69 to -0.11, p=.006), and were conducted individually (d=-0.55; 95% CI=-0.92 to -0.18, p=.003). The physical outcomes (physical activity, fatigue, exercise capacity-VO2, exercise capacity-upper body, body mass index) revealed no statistical significance. Conclusion: Areas of HLSIs for CACS requiring further study were identified, and needs and directions of research for holistic health management were suggested.

Global Ocean Data Assimilation and Prediction System 2 in KMA: Operational System and Improvements (기상청 전지구 해양자료동화시스템 2(GODAPS2): 운영체계 및 개선사항)

  • Hyeong-Sik Park;Johan Lee;Sang-Min Lee;Seung-On Hwang;Kyung-On Boo
    • Atmosphere
    • /
    • v.33 no.4
    • /
    • pp.423-440
    • /
    • 2023
  • The updated version of Global Ocean Data Assimilation and Prediction System (GODAPS) in the NIMS/KMA (National Institute of Meteorological Sciences/Korea Meteorological Administration), which has been in operation since December 2021, is being introduced. This technical note on GODAPS2 describes main progress and updates to the previous version of GODAPS, a software tool for the operating system, and its improvements. GODAPS2 is based on Forecasting Ocean Assimilation Model (FOAM) vn14.1, instead of previous version, FOAM vn13. The southern limit of the model domain has been extended from 77°S to 85°S, allowing the modelling of the circulation under ice shelves in Antarctica. The adoption of non-linear free surface and variable volume layers, the update of vertical mixing parameterization, and the adjustment of isopycnal diffusion coefficient for the ocean model decrease the model biases. For the sea-ice model, four vertical ice layers and an additional snow layer on top of the ice layers are being used instead of previous single ice and snow layers. The changes for data assimilation include the updated treatment for background error covariance, a newly added bias scheme combined with observation bias, the application of a new bias correction for sea level anomaly, an extension of the assimilation window from 1 day to 2 days, and separate assimilations for ocean and sea-ice. For comparison, we present the difference between GODAPS and GODAPS2. The verification results show that GODAPS2 yields an overall improved simulation compared to GODAPS.