• Title/Summary/Keyword: Site release

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Signal Sequence Prediction Based on Hydrophobicity and Substitution Matrix (소수성과 치환행렬에 기반한 신호서열 예측)

  • Chi, Sang-Mun
    • Journal of KIISE:Software and Applications
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    • v.34 no.7
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    • pp.595-602
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    • 2007
  • This paper proposes a method that discriminates signal peptide and predicts the cleavage site of the secretory proteins cleaved by the signal peptidase I. The preprocessing stage uses hydrophobicity scales of amino acids in order to predict the presence of signal sequence and the cleavage site. The preprocessing enhances the performance of the prediction method by eliminating the non-secretory proteins in the early stage of prediction. for the effective use of support vector machine for the signal sequence prediction, the biologically relevant distance between the amino acid sequences is defined by using the hydrophobicity and substitution matrix; the hydrophobicity can be used to Predict the location of amino acid in a cell and the substitution matrix represents the evolutionary relationships of amino acids. The proposed method showed 98.9% discrimination rates from signal sequences and 88% correct rate of the cleavage site prediction on Swiss-Prot release 50 protein database using the 5-fold-cross-validation. In the comparison tests, the proposed method has performed significantly better than other prediction methods.

Concentrations of Water-soluble Particulate, Gaseous tons and Volatile Organic Compounds in the Ambient Air of Ulsan (울산 대기 중의 입자상, 기체상 물질의 수용성 이온 성분과 휘발성 유기화합물의 농도)

  • 나광삼;김용표
    • Journal of Korean Society for Atmospheric Environment
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    • v.14 no.4
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    • pp.281-292
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    • 1998
  • Ambient concentrations of gaseous, particulate phase ionic species, and VOCs (volatile organic compounds) were measured at two monitoring sites in the City of Ulsan during August 1997: one in industrial area and the other in downtown area. At each site, a three- stage filter pack sampler was used to collect fine particles and gaseous species, and air for VOC analysis was collected in stainless steel canisters. Concentrations of the ionic species at both sites were similar to each other. The VOC concentrations at the industrial site were approximately twice higher than those at the downtown site. This might be mainly due to the release of VOCs from the petrochemical industries. Daily variations of VOC concentrations at the industrial site were higher than that at the downtown site. This might be explained by the fact that emissions from industries were more irregular than those in downtown. The VOC concentrations in downtown were affected by both the local emissions and the emission from the petrochemical industries. The concentrations of selected hazardous organic components (HAPs) at the industrial site were similar to those of Yocheon industrial area but slightly higher than other cites and industrial areas, while those at the downtown site were comparable to those in other urban areas.

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Removal and Release Velocities of Nutrients by Submerged Plants in Flood Control Reservoirs around Juam Lake (주암호 홍수조절용지내 침수 식물체의 영양염류 제거속도 및 용출속도)

  • Han, Jong-Hak;Seo, Dong-Cheol;Kim, Sang-Don;Kang, Se-Won;Lim, Byung-Jin;Park, Jong-Hwan;Kim, Kap-Soon;Lee, Jun-Bae;Kim, Hyun-Ook;Heo, Jong-Soo;Cho, Ju-Sik
    • Korean Journal of Environmental Agriculture
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    • v.30 no.2
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    • pp.144-152
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    • 2011
  • BACKGROUND: Eutrophication occurs occasionally in flood control reservoirs around Juam lake in summer and early autumn. Lakeside macrophyte which is one of internal pollutants effects on water quality when it is submerged during water surface is rising after rainy season. METHODS AND RESULTS: To improve water the quality of water from water supply source and to establish the management plan of submerged plants in flood control reservoirs around Juam Lake, the removal and release velocities of nutrients by submerged plants in site 1 and 2 were investigated. Removal or release velocity constant (K) of COD by Carex dimorpholepis Steud in column was 0.07~0.18 $day^{-1}$ at 0~4 days after flooding, -0.23~-0.17 $day^{-1}$ at 5~19 days after flooding and -0.28~0.03 $day^{-1}$ at 20~33 days after flooding. Removal or release velocity constant (K) of T-N by Carex dimorpholepis Steud was 0.02 $day^{-1}$ at 0~4(8) days after flooding, -0.13~-0.10 $day^{-1}$ at 5(9)~33 days after flooding in column. Removal or release velocity constant (K) of T-P by Carex dimorpholepis Steud was 0.05~0.06 $day^{-1}$ at 0~4 days after flooding, -0.14~-0.09 $day^{-1}$ at 5~33 days after flooding. Release velocity constant (K) of nutrients by Miscanthus sacchariflorus Benth was lower than that by Carex dimorpholepis Steud. In site 1, the amount of nutrients release by Carex dimorpholepis Steud was 6,719 kg/month/area for COD, 2,397 kg/month/area for T-N and 466 kg/month/area for T-P. The amounts of nutrients release by Carex dimorpholepis Steud were higher than those by Miscanthus sacchariflorus Benth in both sites. CONCLUSION(s): The results of this study suggest that COD, T-N and T-P in water quality of Juam lake were strongly influenced by submerged plants in flood control reservoirs.

COMPARATIVE STUDY ON REMINERALIZING EFFECT OF COMPOMERS (컴포머의 재석회화 효과에 관한 비교 연구)

  • Chung, Hoi-Min;Kim, Yong-Kee;Kim, Jong-Soo;Kwon, Soon-Won
    • Journal of the korean academy of Pediatric Dentistry
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    • v.29 no.4
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    • pp.498-508
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    • 2002
  • The purpose of this study was to compare the amount of fluoride release and remineralizing effect of compomer with those of glass ionomer cement and composite resin. Composite resin($Z-100^{(R)}$) was used for negative control group(Group I), glass ionomer(Fuji II $LC^{(R)}$) for positive control group(Group IV), compomer(Dyract $AP^{(R)}$ and $F-2000^{(R)}$) for experimental group(Group II and Group III). The results obtained can be summarized as follows : 1. Glass ionomer showed the higher amount of fluoride release than compomer groups. Composite resin showed no fluoride release during test period. 2. Significant evidence of remineralization could be noticed in samples of all groups. The highest degree of remineralization was observed in glass ionomer group followed by compomer group. The least evidence of remineralization was observed in composite resin group. 3. Microhardness values of carious site was lower than control site, but Microhardness values of caries site at form away from filling materials in group II, III, IV was significantly higher than the other area. Based on the above results, compomer could be considered as one of the very attractive restorative materials in the field of pediatric dentistry.

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Multi-unit Level 2 probabilistic safety assessment: Approaches and their application to a six-unit nuclear power plant site

  • Cho, Jaehyun;Han, Sang Hoon;Kim, Dong-San;Lim, Ho-Gon
    • Nuclear Engineering and Technology
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    • v.50 no.8
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    • pp.1234-1245
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    • 2018
  • The risk of multi-unit nuclear power plants (NPPs) at a site has received considerable critical attention recently. However, current probabilistic safety assessment (PSA) procedures and computer code do not support multi-unit PSA because the traditional PSA structure is mostly used for the quantification of single-unit NPP risk. In this study, the main purpose is to develop a multi-unit Level 2 PSA method and apply it to full-power operating six-unit OPR1000. Multi-unit Level 2 PSA method consists of three steps: (1) development of single-unit Level 2 PSA; (2) extracting the mapping data from plant damage state to source term category; and (3) combining multi-unit Level 1 PSA results and mapping fractions. By applying developed multi-unit Level 2 PSA method into six-unit OPR1000, site containment failure probabilities in case of loss of ultimate heat sink, loss of off-site power, tsunami, and seismic event were quantified.

Promoted Bone Regeneration by Nanoparticle-Type Sustained Release System of BMP-2 in Hydrogel

  • Chung, Yong-Il;Lee, Seung-Young;Tae, Gi-Yoong;Ahn, Kang-Min;Jeon, Seung-Ho;Lee, Jong-Ho
    • Proceedings of the Polymer Society of Korea Conference
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    • 2006.10a
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    • pp.264-264
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    • 2006
  • The nanoparticle-hydrogel complex as a new bone defect replacement matrix, which is composed of the nanoparticles for the sustained release of BMP and the hydrogel for filling the bone defect site and playing a role as a matrix where new bone can grow, is presented. In vivo evaluation of bone formation was characterized by soft X-ray, MT staining, and calcium assay, based on the rat calvarial critical size defect model. The effective bone regeneration was achieved by the BMP-2 loaded nanoparticles in fibrin gel, compare to bare fibrin gel, the nanoparticle-fibrin gel complex without BMP-2, or the BMP-2 in fibrin gel, in terms of the new bone area and the gray level in X-ray, the bone marrow are, and the calcium content in the initial defect site. These findings suggest that the BMP-2 loaded nanoparticle-fibrin gel complex can a promising candidate for a new bone defect replacement matrix.

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Derivation of preliminary derived concentration guideline level (DCGL) by reuse scenario for Kori Unit 1 using RESRAD-BUILD

  • Park, Sang June;Byon, Jihyang;Ban, Doo Hyun;Lee, Suhee;Sohn, Wook;Ahn, Seokyoung
    • Nuclear Engineering and Technology
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    • v.52 no.6
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    • pp.1231-1242
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    • 2020
  • The Kori Unit 1 will be decommissioned after a permanent shutdown in June 2017. South Korea has a 0.1 mSv/yr exposure limit standard for limited or unlimited site release. This is South Korea's first commercial NPP; therefore, if the containment building is reused as a memorial hall, it will contribute to the improvement of public understanding and enhance the public's acceptance of NPPs. Also, existing Kori Unit 1 nuclear power plant manpower resources can be reused after decommissioning and resident staff and memorial hall visitors can activate nearby commercial areas. Therefore, such a reuse scenario may also prevent an economic recession. The exposure dose was calculated using the following scenarios: worker in the containment building, visitor in the containment building, and worker in buildings other than the containment building. The exposure dose in the buildings was calculated by the RESRAD-BUILD developed by the Argonne National Laboratory (ANL). The preliminary exposure dose and derived concentration guideline level (DCGL) were derived.

Premature Release of Polyketide Intermediates by Hybrid Polyketide Synthase in Amycolatopsis mediterranei S699

  • Hong, Jay-Sung-Joong;Choi, Cha-Yong;Yoo, Yeo-Joon
    • Journal of Microbiology and Biotechnology
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    • v.13 no.4
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    • pp.613-619
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    • 2003
  • The polyketide backbone of rifamycin B is assembled by the type I rifamycin polyketide synthase (PKS) encoded by the rifA-rifE genes. In order to produce novel analogs of rifamycin via engineering of the PKS genes, inactivation of the ${\beta}-ketoacyl:acyl$ carrier protein reductase (KR) domain in module 8 of rifD, by site-specific mutagenesis of the NADPH binding site, was attempted. Module 8 contains a nonfunctional dehydratase (DH) domain and a functional KR domain that is involved in the reduction of the ${\beta}-carbonyl$ group, resulting in the C-21 hydroxyl of rifamycin B. This mutant strain produced linear polyketides, from tetraketide to octaketide, which were also produced by a rifD-disruption mutant as a consequence of premature termination of the polyketide assembly. Another attempt to replace the DH domain of module 7, which has been considered nonfunctional, with a functional homolog derived from module 7 of rapamycin-producing PKS also resulted in the production of linear polyketides, including the heptaketide intermediate and its precursors. Premature release of the carbon chain assembly intermediates is an unusual property of the rifamycin PKS. that is not seen in other PKSs such as the erythromycin PKS.

Application of SUPAC-MR in Processing Postapproval Changes to Modified Release Sold Oral Dosage Forms (경구용 서방성/지연성 성형제품의 허가 후 변경사항 관리를 위한 SUPAC-MR 응용)

  • Sah, Hong-Kee;Cho, Mi-Hyun;Park, Sang-Ae;Yun, Mi-Ok;Kang, Shin-Jung
    • Journal of Pharmaceutical Investigation
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    • v.34 no.3
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    • pp.229-254
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    • 2004
  • The objective of this study was to scrutinize the rationale of SUPAC-MR and its application in processing postapproval changes to modified release solid oral dosage forms. The types of postapproval changes that were primarily covered with SUPAC-MR included variations in the components and composition, the site of manufacturing, batch size, manufacturing equipment, and manufacturing process. SUPAC-MR defined levels of postapproval changes that the industry might make. Classification of such categories was based on the likelihood of risk occurrence and potential impact of changes upon the safety and efficacy of approved drug products. In most cases, the changes could be classified into 3 levels. It described what chemistry, manufacturing, and control tests should be conducted for each change level. The important tests specified in SUPAC-MR were batch release, stability, in vitro dissolution, and in vivo bioequivalence tests. It then suggested what type of a filing report should be submitted to the FDA for each change level. In general, level 1 changes could be reported in an annual report, whereas level 2 and/or 3 changes could be submitted in changes-being-effected or prior approval supplements. It could be understood that the purpose of SUPAC-MR was to maintain the safety and quality of approved modified release solid oral dosage forms undergoing certain changes. At the same time, it contributed to providing a less burdensome regulatory process with the manufacturers when they wanted to make postapproval changes. European regulatory agencies also implemented SUPAC-like regulations in handling such changes to drug products. Therefore, in this study a recommendation was made for KFDA and the Korean industry to evaluate thoroughly the usefulness of these guidances and regulations in dealing with postapproval changes to modified release solid oral dosage forms.

Neuroendocrine Control of Gonadotropin Secretion during the Menstrual Cycle

  • Ryu, Kyung-Za
    • The Korean Journal of Pharmacology
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    • v.23 no.2
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    • pp.57-75
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    • 1987
  • Two modalities of gonadotropin secretion, pulsatile gonadotropin and preovulatory gonadotropin surge, have been identified in the mammals. Pulsatile gonadotropin secretion is modulated by the pulsatile pattern of GnRH release and complex ovarian steroid feedback actions. The neural mechansim that regulates the pulsatile release of GnRH in the hypothalamus is called "GnRH pulse generator". Ovarian steroids, estradiol and progesterone, appear to exert thier feedback effects both directly on the pituitary to modulate gonadotropin release and on a hypothalamic site to modulate GnRH release; estradiol primarily affects the amplitude while progesterone decreases the frequency of the pulsatile GnRH. Steroid hormones are known to affect catecholamine transmission in brain. MBH-POA is richly innervated by NE systems and close apposition of NE terminals and GnRH cell bodies occurs in the MBH as well as in the POA. NE normally facilitates pulsatile LH release by acting through ${\alpha}-receptor$ mechanism. However, precise nature of facilitative role of NE transmission in maintaining pulsatile LH has not been clearly understood. Close apposition of DA and GnRH terminals in ME might permit DA to influence GnRH release. Action of DA transmission probably is mediated by axo-axonic contacts between GnRH and DA fibers in the ME. Dopamine transmission does not normally regulate pulsatile LH release, but under certain conditions, increased DA transmission inhibit LH pulse. Endogenous opioid acts to suppress the secretion of GnRH into hypophysial portal circulation, thereby inhibiting gonadotropin secretion. However, an interaction between endogenenous opioid peptides and gonadotropin release is a complex one which involves ovarian hormones as well. LH secretion appears to be most suppressed by endogenenous opioids during the luteal phase, at a time of elevated progesterone secretion. The arcuate nucleus contains not only cell bodies for GnRH and ${\beta}-endorphin$ but also a dense aborization of fibers suggesting that GnRH release is changed by the interactions between GnRH and ${\beta}-endorphin$ cell bodies within the arcuate nucleus. The frequency and amplitude of pulsatile LH release seem to be increased during the preovulatory gonadotropin surge. Estradiol exerts positive feedback action on the hypothalamo-pituitary axis to trigger preovulatory LH surge. GnRH is also crucial hormonal stimulus for preovulatory LH surge. It is unlikely, however, that increased secretion of GnRH during the preovulatory gonadotropin surge represents an obligatory neural signal for generation of the LH discharge in primates including human. Modulation of preovulatory LH surge by catecholamines has been studied almost exclusively in rats. NE and E may be involved in distinct way to accumulate GnRH in the MBH and its release into the hypophysial portal system during the critical period for LH surge on proestrus in rats. However, the mechanisms whereby augmented adrenergic transmission may facilitate the formation and accumulation of GnRH in the ME-ARC nerve terminals before the LH surge have not been clearly understood.

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