• Title/Summary/Keyword: Single-cell analysis

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Expression Analyses Revealed Thymic Stromal Co-Transporter/Slc46A2 Is in Stem Cell Populations and Is a Putative Tumor Suppressor

  • Kim, Ki Yeon;Lee, Gwanghee;Yoon, Minsang;Cho, Eun Hye;Park, Chan-Sik;Kim, Moon Gyo
    • Molecules and Cells
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    • v.38 no.6
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    • pp.548-561
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    • 2015
  • By combining conventional single cell analysis with flow cytometry and public database searches with bioinformatics tools, we extended the expression profiling of thymic stromal cotransporter (TSCOT), Slc46A2/Ly110, that was shown to be expressed in bipotent precursor and cortical thymic epithelial cells. Genome scale analysis verified TSCOT expression in thymic tissue- and cell type- specific fashion and is also expressed in some other epithelial tissues including skin and lung. Coexpression profiling with genes, Foxn1 and Hoxa3, revealed the role of TSCOT during the organogenesis. TSCOT expression was detected in all thymic epithelial cells (TECs), but not in the $CD31^+$endothelial cell lineage in fetal thymus. In addition, ABC transporter-dependent side population and Sca-$1^+$ fetal TEC populations both contain TSCOT-expressing cells, indicating TEC stem cells express TSCOT. TSCOT expression was identified as early as in differentiating embryonic stem cells. TSCOT expression is not under the control of Foxn1 since TSCOT is present in the thymic rudiment of nude mice. By searching variations in the expression levels, TSCOT is positively associated with Grhl3 and Irf6. Cytokines such as IL1b, IL22 and IL24 are the potential regulators of the TSCOT expression. Surprisingly, we found TSCOT expression in the lung is diminished in lung cancers, suggesting TSCOT may be involved in the suppression of lung tumor development. Based on these results, a model for TEC differentiation from the stem cells was proposed in context of multiple epithelial organ formation.

Epidermal growth factor receptor overexpression and K-ras mutation detection in the oral squamous cell carcinoma (구강편평상피암종에서 상피성장인자 수용체의 과발현과 K-ras 유전자 변이)

  • Moon, Byeong-Chool;Han, Se-Jin;Jeong, Dong-Jun;Kim, Kyung-Wook
    • Journal of the Korean Association of Oral and Maxillofacial Surgeons
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    • v.37 no.5
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    • pp.396-402
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    • 2011
  • Introduction: Epidermal growth factor is a single-chain polypeptide consisting of 53 amino acids with potent mitogenic activity that stimulates the proliferation of a range of normal and neoplastic cells through an interaction with its specific receptor (epidermal growth factor receptor, EGFR). This interaction plays a key role in tumor progression including the induction of tumor cell proliferation. An increased EGFR copy number have been associated with a favorable response to EGFR tyrosine kinase inhibitors therapy. In contrast, K-ras mutations tend to predict a poor response to such therapy. The aim of this study was to determine the correlation between the clinicopathological factors and the up-regulation of EGFR expression and Kras mutations in oral squamous cell carcinoma. Materials and Methods: This study examined the immunohistochemical staining of EGFR, K-ras mutation detection with peptide nucleic acid (PNA)-based real-time polymerase chain reaction (PCR) clamping in 20 specimens from 20 patients with oral squamous cell carcinoma. Results: 1. In the immunohistochemical study of poorly differentiated and invasive oral squamous cell carcinoma, a high level of EGFR staining was observed. The correlation between immunohistochemical EGFR expression and histological differentiation, as well as the tumor size of the specimens was significant (Pearson correlation analysis, significance [r] >0.5, P<0.05). 2. In PNA-based real-time PCR clamping analysis, a K-ras mutation was not detected in all specimens. Conclusion: These findings suggest that the up-regulation of the EGFR may play a role in the progression and invasion of oral squamous cell carcinoma that is, independent of a K-ras mutation.

Microstructure and Electrical Properties of Single Cells Based on a Ni-YSZ Cermet Anode for IT-SOFCs (중.저온헝 SOFC를 위한 Ni-YSZ 연료극 지지체형 단전지 미세구조와 전기적 특성)

  • Park, Jae-Keun;Yang, Su-Yong;Lee, Tae-Hee;Oh, Je-Myung;Yoo, Young-Sung;Park, Jin-Woo
    • Journal of the Korean Ceramic Society
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    • v.43 no.12 s.295
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    • pp.823-828
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    • 2006
  • One of the main issues of Solid Oxide Fuel Cells (SOFCs) is to reduce the operating temperature to $750^{\circ}C$ or less. It has advantages of improving the life of component parts and the long-term stability of a system, so the production cost could be decreased. In order to achieve that, the ohmic and polarization loss of a single cell should be minimized first. This paper presents.to fabricate anode-supported single cells with controlling microstructure as a function of particle size and volume of graphite and NiO-YSZ weight ratio. By means of optimizing the manufactural condition through microstructure analysis and performance evaluation, the single cell which had NiO-YSZ=6:4, graphite volume of 24% and graphite size of $75{\mu}m$ as the anode composition showed a distinguished power density of $510mW/cm^2$ at $650^{\circ}C$ and $810mW/cm^2$ at $700^{\circ}C$, respectively.

Analytical Methods for the Extraction of PV panel Single-Diode model parameters from I-V Characteristic (I-V 특성곡선을 통한 태양전지 패널의 모델 파라미터 추출 방법)

  • Choi, Sung-Won;Ryu, Ji-Hyung;Lee, Chang-Goo
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.12 no.2
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    • pp.847-851
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    • 2011
  • Photovoltaic System is increasing install capacity based on environmental-friendly characteristics. It have been actively studied to improve the efficiency. In order to design highly efficient system, it is important to understand the output characteristics of solar panels. The single diode model can represent the physical characteristics of solar panel. But it needs complex process such as mutli-step measurement and numerical analysis to get the exact parameters. In this paper, The method for extracting characteristic parameters of the single diode model based on the I-V characteristic curves in the panel manufacturer's data-sheet is presented. To verify the proposed method, solar cell model constructed in simulink. Simulink model output compared with output graph in datasheet.

A Study on the Heat Transfer Analysis of High-Temperature Single Bubble in Water (수중 고온 단일 기포의 열전달 해석 연구)

  • SeokTae Yoon
    • Journal of Korea Society of Industrial Information Systems
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    • v.29 no.1
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    • pp.117-123
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    • 2024
  • Bubbles generated in water receive an upward buoyant force due to the density and pressure difference of the surrounding fluid. Additionally, the behavior, shape, and heat exchange process of bubbles vary depending on the viscosity, surface tension, rising speed, and size difference with the surrounding fluid. In this study, we modeled speed, and heat transfer of a high-temperature single bubble rising in a cylindrical water tank. For this purpose, velocity, and temperature of the bubbles were calculated using theoretical equations, to be compared with numerical simulation results. The numerical analysis was performed using a commercial software, and the stability of the numerical analysis with mesh size was confirmed through calculation of the grid convergence index. The numerical analysis of the rising speed and temperature of a single bubble showed the values to converge when the minimum cell size was 1/160 of the bubble diameter, and the temperature decrease was confirmed to be the same as that of the surrounding fluid within 0.05 seconds.

Statistical Analysis of 3D Volume of Red Blood Cells with Different Shapes via Digital Holographic Microscopy

  • Yi, Faliu;Lee, Chung-Ghiu;Moon, In-Kyu
    • Journal of the Optical Society of Korea
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    • v.16 no.2
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    • pp.115-120
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    • 2012
  • In this paper, we present a method to automatically quantify the three-dimensional (3D) volume of red blood cells (RBCs) using off-axis digital holographic microscopy. The RBCs digital holograms are recorded via a CCD camera using an off-axis interferometry setup. The RBCs' phase image is reconstructed from the recorded off-axis digital hologram by a computational reconstruction algorithm. The watershed segmentation algorithm is applied to the reconstructed phase image to remove background parts and obtain clear targets in the phase image with many single RBCs. After segmenting the reconstructed RBCs' phase image, all single RBCs are extracted, and the 3D volume of each single RBC is then measured with the surface area and the phase values of the corresponding RBC. In order to demonstrate the feasibility of the proposed method to automatically calculate the 3D volume of RBC, two typical shapes of RBCs, i.e., stomatocyte/discocyte, are tested via experiments. Statistical distributions of 3D volume for each class of RBC are generated by using our algorithm. Statistical hypothesis testing is conducted to investigate the difference between the statistical distributions for the two typical shapes of RBCs. Our experimental results illustrate that our study opens the possibility of automated quantitative analysis of 3D volume in various types of RBCs.

Characterization of Ha29, a Specific Gene for Helicoverpa armigera Single-nucleocapsid Nucleopolyhedrovirus

  • Guo, Zhong-Jian;An, Shi-Heng;Wang, Dun;Liu, Yan-He;Kumar, V. Shyam;Zhang, Chuan-Xi
    • BMB Reports
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    • v.38 no.3
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    • pp.354-359
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    • 2005
  • Open reading frame 29 (ha29) is a gene specific for Helicoverpa armigera single-nucleocapsid nucleopolyhedrovirus (HearSNPV). Sequence analyses showed that the transcription factor Tfb2 motif, bromodomain and Half-A-TPR (HAT) repeat were present at aa 66-82, 4-76, 55-90 of the Ha29 protein respectively. The product of Ha29 was detected in HearSNPV-infected HzAM1 cells at 3 h post-infection. Western blot analysis using a polyclonal antibody produced by immunizing a rabbit with purified GST-Ha29 fusion protein indicates that Ha29 is an early gene. The size of Ha29 product in infected HzAM1 cells was about 25 kDa, which was larger than the presumed size of 20.4 kDa. Tunicamycin treatment of HearSNPV-infected HzAM1 cells suggested that the Ha29 protein is N-glycosylated. Fluorescent confocal laser scanning microscope examination, and Western blot analysis of purified budded virus (BVs), occlusion-derived virus (ODVs), cell nuclear and cytoplasmic fraction, showed that the Ha29 protein was localized in the nucleus. Our results suggested that ha29 of HearSNPV encodes a non-structurally functional protein that may be associated with virus gene transcription in Helicoverpa hosts.

A Study on the Applicability of Double-Sided Vertical Photovoltaic Panels Based on Energy Productivity Analysis (에너지 생산성 분석 기반 양면발전형 수직 태양전지의 활용 가능성 탐색)

  • Seung-Ju Choe;Seung-Hoon Han
    • New & Renewable Energy
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    • v.19 no.4
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    • pp.84-97
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    • 2023
  • This study aimed to investigate the feasibility and potential applications of utilizing bifacial photovoltaic (PV) panels from an architectural perspective. It also aimed to establish a foundational dataset for installation and operational guidelines for bifacial PV panels through a comparative analysis of energy production performance with single PV panels. The research encompassed several key steps, including a comprehensive literature review, calculation of solar surface radiation values, development of datasets for bifacial and single PV energy production, and a performance comparison between both approaches. The results of the study show that bifacial PV panels exhibit optimized energy production capabilities within the range of 40 to 80 degrees, contingent upon the specific installation location. Consequently, it is recommended that the installation of bifacial PV panels in Korea should primarily focus on southwest-to-west orientation. Furthermore, it was concluded that bifacial PV panels could contribute an equivalent or even superior level of energy production compared to single PV panels, even if their performance exhibited a marginally lower efficiency of 2% to 5% with an 18% power generation efficiency.

Phosphorylation of SAV1 by mammalian ste20-like kinase promotes cell death

  • Park, Byoung-Hee;Lee, Yong-Hee
    • BMB Reports
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    • v.44 no.9
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    • pp.584-589
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    • 2011
  • The mammalian ste20-like kinase (MST) pathway is important in the regulation of apoptosis and cell cycle and emerges as a novel tumor suppressor pathway. MST-induced phosphorylation of Salvador homolog 1 (SAV1), which is a scaffold protein, has not been evaluated in detail. We performed a mass spectrometric analysis of the SAV1 protein that was co-expressed with MST2. Phosphorylation was detected at Thr-26, Ser-27, Ser-36 and Ser-269. Although single or double mutations had little effects, the mutation of all four residues in SAV1 to Ala (SAV1-4A) had inhibitory effects on the MST pathway. MST2-mediated induction of SAV1-4A protein levels, SAV1-4A interaction with MST2 and the self-dimerization of SAV1-4A were weaker compared to those of wild-type SAV1. SAV1-4A inhibited MST2- and K-RasG12V-induced cell death of MCF7 cells. These results suggest that MST-mediated phosphorylation of four residues within SAV1 may be important in the induction of cell death by the MST pathway.

Thermal and Flow Analysis in a Proton Exchange Membrane Fuel Cell

  • Jung, Hye-Mi;Koo, Ja-Ye
    • Journal of Mechanical Science and Technology
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    • v.17 no.9
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    • pp.1358-1370
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    • 2003
  • The effects of anode, cathode, and cooling channels for a Proton Exchange Membrane Fuel Cell (PEMFC) on flow fields have been investigated numerically. Continuous open-faced fluid flow channels formed in the surface of the bipolar plates traverse the central area of the plate surface in a plurality of passes such as a serpentine manner. The pressure distributions and velocity profiles of the hydrogen, air and water channels on bipolar plates of the PEMFC are analyzed using a two-dimensional simulation. The conservation equations of mass, momentum, and energy in the three-dimensional flow solver are modified to include electro-chemical characteristics of the fuel cell. In our three-dimensional numerical simulations, the operation of electro-chemical in Membrane Electrolyte Assembly (MEA) is assumed to be steady-state, involving multi-species. Supplied gases are consumed by chemical reaction. The distributions of oxygen and hydrogen concentration with constant humidity are calculated. The concentration of hydrogen is the highest at the center region of the active area, while the concentration of oxygen is the highest at the inlet region. The flow and thermal profiles are evaluated to determine the flow patterns of gas supplied and cooling plates for an optimal fuel cell stack design.