• Title/Summary/Keyword: Single relaxation time

Search Result 87, Processing Time 0.028 seconds

Backbone Dynamics and Model-Free Analysis of N-terminal Domain of Human Replication Protein A 70

  • Yoo, Sooji;Park, Chin-Ju
    • Journal of the Korean Magnetic Resonance Society
    • /
    • v.22 no.1
    • /
    • pp.18-25
    • /
    • 2018
  • Replication protein A (RPA) is an essential single-stranded DNA binding protein in DNA processing. It is known that N terminal domain of RPA70 (RPA70N) recruits various protein partners including damage-response proteins such as p53, ATRIP, Rad9, and MRE11. Although the common binding residues of RPA70N were revealed, dynamic properties of the protein are not studied yet. In this study, we measured $^{15}N$ relaxation parameters ($T_1,\;T_2$ and heteronuclear NOE) of human RPA70N and analyzed them using model-free analysis. Our data showed that the two loops near the binding site experience fast time scale motion while the binding site does not. It suggests that the protein binding surface of RPA70N is mostly rigid for minimizing entropy cost of binding and the loops can experience conformational changes.

The Application Of F.C.M(Free Cantilever Method) Case Study Of The Railway Bridge (철도교량 F.C.M(Free Cantilever Method) 공법 시공사례 연구)

  • Kwon, Soon-Seob;Kim, Kyong-Yeon;Choi, Dong-Kee;Jeong, In-Choul;Shin, Sang-Chul
    • Proceedings of the KSR Conference
    • /
    • 2005.05a
    • /
    • pp.562-567
    • /
    • 2005
  • F.C.M applied from Jin Jung Li to Yang Su Li(660m) in Puk Han River Bridge(1,414m) construction part is a construction method on the double-track construction which is the third section part of work, called Chung Ang Railroad Line(Deok-So${\sim}$Won-Ju). This method is the beginning application on Railroad Bridge. After completing upper slab structure, there are several following works such as setting up ballast, sleepers and laying long rails. So it is important to consider the properties of Railroad Bridge while designing the length of bridge and its single span. After the physical process study the shrinkage and creep of concrete, bending up by prestressing in general PSM bridge, relaxation of tendons as time goes by after post-tension, the conclusion of such a study is applied to the Puk-Han River Bridge in this construction field.

  • PDF

Thermodynamic properties and structural geometry of KMgCl3·6H2O single crystals

  • Yoon, Hyo In;Lim, Ae Ran
    • Journal of the Korean Magnetic Resonance Society
    • /
    • v.19 no.3
    • /
    • pp.119-123
    • /
    • 2015
  • The thermodynamic properties and structural geometry of $KMgCl_3{\cdot}6H_2O$ were investigated using thermogravimetric analysis, differential scanning calorimetry, and nuclear magnetic resonance. The initial mass loss occurs around 351 K ($=T_d$), which is interpreted as the onset of partial thermal decomposition. Phase transition temperatures were found at 435 K ($=T_{C1}$) and 481 K ($=T_{C2}$). The temperature dependences of the spin-lattice relaxation time $T_1$ for the $^1H$ nucleus changes abruptly near $T_{C1}$. These changes are associated with changes in the geometry of the arrangement of octahedral water molecules.

Application of Subgrid Turbulence Model to the Finite Difference Lattice Boltzmann Method (차분 래티스볼츠만법에 Subgrid 난류모델의 적용)

  • Kang Ho-Keun;Ahn Soo-Whan;Kim Jeong-Whan
    • Journal of Advanced Marine Engineering and Technology
    • /
    • v.30 no.5
    • /
    • pp.580-588
    • /
    • 2006
  • Two-dimensional turbulent flows past a square cylinder and cavity noise are simulated by the finite difference lattice Boltzmann method with subgrid turbulence model. The method, based on the standard Smagorinsky subgrid model and a single-time relaxation lattice Boltzmann method, incorporates the advantages of FDLBM for handling arbitrary boundaries. The results are compared with those by the experiments carried out by Noda & Nakayama and Lyn et al. Numerical results agree with the experimental ones. Besides, 2D computation of the cavity noise generated by flow over a cavity at a Mach number of 0.1 and a Reynolds number based on cavity depth of 5000 is calculated. The computation result is well presented a understanding of the physical phenomenon of tonal noise occurred primarily by well-jet shear layer and vortex shedding and an aeroacoustic feedback loop.

A complexity analysis of a "pragmatic" relaxation method for the combinatorial optimization with a side constraint (단일 추가제약을 갖는 조합최적화문제를 위한 실용적 완화해법의 계산시간 분석)

  • 홍성필
    • Journal of the Korean Operations Research and Management Science Society
    • /
    • v.25 no.1
    • /
    • pp.27-36
    • /
    • 2000
  • We perform a computational complexity analysis of a heuristic algotithm proposed in the literature for the combinatorial optimization problems extended with a single side-constraint. This algorithm, although such a view was not given in the original work, is a disguised version of an optimal Lagrangian dual solution technique. It also has been observed to be a very efficient heuristic producing near-optimal solutions for the primal problems in some experiments. Especially, the number of iterations grows sublinearly in terms of the network node size so that the heuristic seems to be particularly suitable for the applicatons such as routing with semi-real time requirements. The goal of this paper is to establish a polynomal worst-case complexity of the algorithm. In particular, the obtained complexity bound suports the sublinear growth of the required iterations.

  • PDF

NUMERICAL MODELLING OF SHEET-FLOW TRANSPORT UNDER WAVE AND CURRENT

  • Bakhtiary, Abbas-Yeganeh;Hotoshi Gotoh;Tetsuo Sakai
    • Water Engineering Research
    • /
    • v.3 no.2
    • /
    • pp.75-84
    • /
    • 2002
  • An Euler-Lagrange two-phase flow model is presented fur simulation sheet-flow transport under wave and current. The flow is computed by solving the Reynolds Averaged Navier-Stokes equation in conjunction with the k-$\varepsilon$ turbulence model for turbulence closure. The sediment transport is introduced as a motion of granular media under the action of unsteady flow from the Lagragian point of view. In other word, motion of every single particle is numerically traced with Movable Bed Simulator (MBS) code based on the Distinct Element Method (DEM), in which the frequent interparticle collision of the moving particles during the sheet-flow transport is sophisticatedly taken into account. The particle diameter effect on time-dependent developing process of sheet-flow transport is investigated, by using three different diameter sizes of sediment. The influence of an imposed current on oscillatory sheet-flow transport is also investigated. It is concluded that the sediment transport rate increases due to the relaxation process related to the time-lag between flow velocity and sediment motion.

  • PDF

Electric Conduction Mechanisms Study within Zr Doped Mn3O4 Hausmannite Thin Films through an Oxidation Process in Air

  • Said, L. Ben;Boughalmi, R.;Inoubli, A.;Amlouk, M.
    • Applied Microscopy
    • /
    • v.47 no.3
    • /
    • pp.131-147
    • /
    • 2017
  • In this work further optical and electrical investigations of pure and Zr doped $Mn_3O_4$ (from 0 up to 20 at.%) thin films as a function of frequency. First, the refractive index, the extinction coefficient and the dielectric constants in terms of Zr content are reached from transmittance and reflectance data. The dispersion of the refractive index is discussed by means of Cauchy model and Wemple and DiDomenico single oscillator models. By exploiting these results, it was possible to estimate the plasma pulse ${\omega}_p$, the relaxation time ${\tau}$ and the dielectric constant ${\varepsilon}_{\infty}$. Second, we have performed original ac and dc conductivity studies inspired from Jonscher model and Arrhenius law. These studies helped establishing significant correlation between temperature, activation energy and Zr content. From the spectroscopy impedance analysis, we investigated the frequency relaxation phenomenon and hopping mechanisms of such thin films. Moreover, a special emphasis has been putted on the effect of the oxidation in air of hausmannite thin films to form $Mn_2O_3$ ones at $350^{\circ}C$. This intrigue phenomenon which occurred at such temperature is discussed along with this electrical study. Finally, all results have been discussed in terms of the thermal activation energies which were determined with two methods for both undoped and Zr doped $Mn_3O_4$ thin films in two temperature ranges.

Vasorelaxation Effect of Butanol Fraction of Crataegi Fructus due to LC20 dephosphorylation via increase of Myosin Phosphophatase activity (산사 Butaol 분획이 PGF2$\alpha$-유도 혈관평활근수축의 억제에 미치는 신호전달 연구)

  • Liang Liou Jia;Choi Ho Jeong;Kim Gil-Whon;Shin Heung Mook
    • Journal of Physiology & Pathology in Korean Medicine
    • /
    • v.17 no.2
    • /
    • pp.461-466
    • /
    • 2003
  • The primary mechanism of smooth muscle contraction is phosphorylation of the 20 kDa myosin light chains(LC20) by a myosin light chain kinase(MLCK). Relaxation, then, is generally the result of dephosphorylation of LC20 by myosin phosphatase(MP). Changes in MP activity is one of the important mechanisms in the regulation of Ca2+-sensitivity. Inhibition of MP activity is linked to an increase in phosphorylated myosin light chain(MLC) without an increase in [Ca/sup 2+/]i-levels. It is now generally accepted that Rho-kinase phosphorylates 130 kDa regulatory and myosin binding subunits(M130, MYPT) of MP, which results in an inhibition of MP activity. In addition Rho-kinase can also directly phosphorylate MLC. In the present study, LC20 phosphorylation and MP subunits translocation to the cell membrane were investigated in freshly isolated ferret portal vein smooth muscle single cells treated with PGF2α. We also examined the effect of Y27632(10-5mol/L), Rho-kinase inhibitor, in the MP subunits localization to compare with butanol fraction of Fructus Crataegi in its effect. Butanol fraction of Fructus Crataegi(BFFC; 1㎎/㎖) was more effective in PGF2α induced contraction than those of phenylephrine in its vasodilation effect. It significantly(P<0.05) dephosphorylated the LC20 at time indicated. In addition, the dissociation of subunits are inhibited by BFCF treatment. The results indicate that, in the smooth muscle cells, the relaxation effect of BFFC is associated with increase of MP activity based on inhibition of dissociation of the catalytic and targeting subunits of the phosphatase, and thus decrease the sensitivity of LC20 phosphorylation for Ca/sup 2+/.

Altered Electrophysiological Properties of Coronary Artery in Iso-prenaline-Induced Cardiac Hypertrophy

  • Kim, Na-Ri;Han, Jin;Kim, Eui-Yong
    • The Korean Journal of Physiology and Pharmacology
    • /
    • v.5 no.5
    • /
    • pp.413-421
    • /
    • 2001
  • An impaired smooth muscle cell (SMC) relaxation of coronary artery by alteration of $K^+$ channels would be the most potential explanation for reduced coronary reserve in left ventricular hypertrophy (LVH), however, this possibility has not been investigated. We performed morphometrical analysis of the coronary artery under electron microscopy and measured $Ca^{2+}-activated\;K\;(K_{Ca})$ currents and delayed rectifier K $(K_{dr})$ currents by whole-cell and inside-out patch-clamp technique in single coronary arterial SMCs from rabbits subjected to isoprenaline-induced cardiac hypertrophy. Coronary arterial SMCs underwent significant changes in ultrastructure. The unitary current amplitude and the open-state probability of $K_{Ca}$ channel were significantly reduced in hypertrophy without open-time and closed-time kinetic. The concentration-response curve of $K_{Ca}$ channel to $Ca^{2+}$ is shifted to the right in hypertrophy. The reduction in the mean single channel current and increase in the open channel noise of $K_{Ca}$ channel by TEA were more sensitive in hypertrophy. $K_{dr}$ current density is significantly reduced in hypertrophy without activation and inactivation kinetics. The sensitivity of $K_{dr}$ current on 4-AP is significantly increased in hypertrophy. This is the first study to report evidence for alterations of $K_{Ca}$ channels and $K_{dr}$ channels in coronary SMCs with LVH. The findings may provide some insight into mechanism of the reduced coronary reserve in LVH.

  • PDF

Effects of soil-structure interaction on construction stage analysis of highway bridges

  • Ates, Sevket;Atmaca, Barbaros;Yildirim, Erdal;Demiroz, Nurcan Asci
    • Computers and Concrete
    • /
    • v.12 no.2
    • /
    • pp.169-186
    • /
    • 2013
  • The aim of this paper is to determine the effect of soil-structure interaction and time dependent material properties on behavior of concrete box-girder highway bridges. Two different finite element analyses, one stage and construction stage, have been carried out on Komurhan Bridge between Elazi$\breve{g}$ and Malatya province of Turkey, over Fırat River. The one stage analysis assume that structure was built in a second and material properties of structure not change under different loads and site conditions during time. However, construction stage analysis considers that construction time and time dependent material properties. The main and side spans of bridge are 135 m and 76 m, respectively. The bridge had been constructed in 3 years between 1983 and 1986 by balanced cantilever construction method. The parameters of soil-structure interaction (SSI), time dependent material properties and construction method are taken into consideration in the construction stage analysis while SSI is single parameter taking into consideration in the one stage analysis. The 3D finite element model of bridge is created the commercial program of SAP2000. Time dependent material properties are elasticity modulus, creep and shrinkage for concrete and relaxation for steel. Soft, medium, and firm soils are selected for evaluating SSI in both analyses. The results of two different finite element analyses are compared with each other. It is seen that both construction stage and SSI have a remarkable effect on the structural behavior of the bridge.