• Title/Summary/Keyword: Single parent

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Extent of linkage disequilibrium and effective population size of Korean Yorkshire swine

  • Shin, Donghyun;Won, Kyeong-Hye;Kim, Sung-Hoon;Kim, Yong-Min
    • Asian-Australasian Journal of Animal Sciences
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    • v.31 no.12
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    • pp.1843-1851
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    • 2018
  • Objective: We aimed to characterize linkage disequilibrium (LD) and effective population size ($N_e$) in a Korean Yorkshire population using genomic data from thousands of individuals. Methods: We genotyped 2,470 Yorkshire individuals from four major Grand-Grand-Parent farms in Korea using the Illumina PorcineSNP60 version2 BeadChip, which covers >61,565 single nucleotide polymorphisms (SNPs) located across all chromosomes and mitochondria. We estimated the expected LD and inferred current $N_e$ as well as ancestral $N_e$. Results: We identified 61,565 SNP from autosomes, mitochondria, and sex chromosomes and characterized the LD of the Yorkshire population, which was relatively high between closely linked markers (>0.55 at 50 kb) and declined with increasing genetic distance. The current $N_e$ of this Korean Yorkshire population was 122.87 (106.90; 138.84), while the historical $N_e$ of Yorkshire pigs suggests that the ancestor $N_e$ has decreased by 99.6% over the last 10,000 generations. Conclusion: To maintain genetic diversity of a domesticated animal population, we must carefully consider appropriate breed management methods to avoid inbreeding. Although attenuated selection can affect short-term genetic gain, it is essential for maintaining the long-term genetic variability of the Korean Yorkshire population. Continuous and long-term monitoring would also be needed to maintain the pig population to avoid an unintended reduction of $N_e$. The best way to preserve a sustainable population is to maintain a sufficient $N_e$.

Analysis of genome variants in dwarf soybean lines obtained in F6 derived from cross of normal parents (cultivated and wild soybean)

  • Roy, Neha Samir;Ban, Yong-Wook;Yoo, Hana;Ramekar, Rahul Vasudeo;Cheong, Eun Ju;Park, Nam-Il;Na, Jong Kuk;Park, Kyong-Cheul;Choi, Ik-Young
    • Genomics & Informatics
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    • v.19 no.2
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    • pp.19.1-19.9
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    • 2021
  • Plant height is an important component of plant architecture and significantly affects crop breeding practices and yield. We studied DNA variations derived from F5 recombinant inbred lines (RILs) with 96.8% homozygous genotypes. Here, we report DNA variations between the normal and dwarf members of four lines harvested from a single seed parent in an F6 RIL population derived from a cross between Glycine max var. Peking and Glycine soja IT182936. Whole genome sequencing was carried out, and the DNA variations in the whole genome were compared between the normal and dwarf samples. We found a large number of DNA variations in both the dwarf and semi-dwarf lines, with one single nucleotide polymorphism (SNP) per at least 3.68 kb in the dwarf lines and 1 SNP per 11.13 kb of the whole genome. This value is 2.18 times higher than the expected DNA variation in the F6 population. A total of 186 SNPs and 241 SNPs were discovered in the coding regions of the dwarf lines 1282 and 1303, respectively, and we discovered 33 homogeneous nonsynonymous SNPs that occurred at the same loci in each set of dwarf and normal soybean. Of them, five SNPs were in the same positions between lines 1282 and 1303. Our results provide important information for improving our understanding of the genetics of soybean plant height and crop breeding. These polymorphisms could be useful genetic resources for plant breeders, geneticists, and biologists for future molecular biology and breeding projects.

Development of Selective Butyrylcholinesterase Inhibitors Using (R)-Lipoic Acid-Polyphenol Hybrid Molecules

  • Woo, Yeun-Ji;Lee, Bo-Hyun;Yeun, Go-Heum;Kim, Hyun-Ju;Ko, Jang-Myoun;Won, Moo-Ho;Lee, Bong-Ho;Park, Jeong-Ho
    • Bulletin of the Korean Chemical Society
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    • v.32 no.spc8
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    • pp.2997-3002
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    • 2011
  • A series of hybrid molecules between (R)-lipoic acid (ALA) and the acetylated or methylated polyphenol compounds were synthesized and their in vitro cholinesterase [acetylcholinesterase (AChE) and butyrylcholinesterase (BuChE)] inhibition activities were checked. The $IC_{50}$ values of all hybrid molecules for a BuChE inhibition were lower than those of the single parent compounds. Specifically, ALA-acetyl protected caffeic acid (11, ALA-AcCA) was shown as an effective inhibitor of BuChE ($IC_{50}=0.5{\pm}0.2\;{\mu}M$) and also had a great selectivity for BuChE over AChE (more than 800 fold). Inhibition kinetic study indicated that 11 is a mixed inhibition type. Its binding affinity ($K_i$) value to BuChE is $1.52{\pm}0.18\;{\mu}M$.

Comparative Analysis of Repetitive Elements of Imprinting Genes Reveals Eleven Candidate Imprinting Genes in Cattle

  • Kim, HyoYoung;Kim, Heebal
    • Asian-Australasian Journal of Animal Sciences
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    • v.22 no.6
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    • pp.893-899
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    • 2009
  • Few studies have reported the existence of imprinted genes in cattle compared to the human and mouse. Genomic imprinting is expressed in monoallelic form and it depends on a single parent-specific form of the allele. Comparative analysis of mammals other than the human is a valuable tool for explaining the genomic basis of imprinted genes. In this study, we investigated 34 common imprinted genes in the human and mouse as well as 35 known non-imprinted genes in the human. We found short interspersed nuclear elements (SINEs), long interspersed nuclear elements (LINEs), and long terminal repeats (LTRs) in imprinted (human and mouse) and control (cattle) genes. Pair-wise comparisons for the three species were conducted using SINEs, LINEs, and LTRs. We also calculated 95% confidence intervals of frequencies of repetitive sequences for the three species. As a result, most genes had a similar interval between species. We found 11 genes with conserved SINEs, LINEs, and LTRs in the human, mouse, and cattle. In conclusion, eleven genes (CALCR, Grb10, HTR2A, KCNK9, Kcnq1, MEST, OSBPL5, PPP1R9A, Sgce, SLC22A18, and UBE3A) were identified as candidate imprinted genes in cattle.

The Study of Related Factors Affecting Unwed Mother's Decision on Self-nurture or Adoption of Her Child (시설미혼모의 양육/입양 선택에 관한 연구)

  • Lee, Eyn Joo;Choi, Kyu Reon
    • The Korean Journal of Community Living Science
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    • v.25 no.2
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    • pp.247-260
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    • 2014
  • In this study, unwed mothers residing in nine residental facilities were surveyed by questionnaires. Those facilities were selected from national welfare facilities officially registered for single-parent families in 2011. The selected facilities were two places in Seoul, six places in Gyeonggi Province and one place in Chungcheong Province. The surveyed data were analyzed by statistical methods such as frequency, percentage, one way ANOVA, chi-square test and t-test, binary logistic regression using SPSS ver.17.0 program. As a result, their decision of adoption or self-nurture on their child was significantly affected by various factors. Among pregnancy-related factors, pregnancy recognition time was significantly different between two groups. Among personal factors, their age and cognition of parental role were important factors to differentiate two groups. In the analysis related with social resources, the self-nurture group had significantly higher experience and satisfaction on welfare service and lodging & boarding service compared to those of the adoption-choice group.

Y-Stenting Endovascular Treatment for Ruptured Intracranial Aneurysms : A Single-Institution Experience in Korea

  • Lee, Woo Joo;Cho, Chun-Sung
    • Journal of Korean Neurosurgical Society
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    • v.52 no.3
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    • pp.187-192
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    • 2012
  • Objective : Stent-assisted coiling on intracranial aneurysm has been considered as an effective technique and has made the complex aneurysms amenable to coiling. To achieve reconstruction of intracranial vessels with preservation of parent artery the use of stents has the greatest potential for assisted coiling. We report the results of our experiences in ruptured wide-necked intracranial aneurysms using Y-stent coiling. Methods : From October 2003 to October 2011, 12 patients (3 men, 9 women; mean age, 62.6) harboring 12 complex ruptured aneurysms (3 middle cerebral artery, 9 basilar tip) were treated by Y-stent coiling by using self-expandable intracranial stents. Procedural complications, clinical outcome, and initial and midterm angiographic results were evaluated. The definition of broad-necked aneurysm is neck diameter over than 4 mm or an aneurysm with a neck diameter smaller than 4 mm in which the dome/neck ratio was less than 2. Results : In all patients, the aneurysm was successfully occluded with no apparent procedure-related complication. There was no evidence of thromboembolic complication, arterial dissection and spasm during procedure. Follow-up studies showed stable and complete occlusion of the aneurysm in all patients with no neurologic deficits. Conclusion : The present study did show that the Y-stent coiling seemed to facilitate endovascular treatment of ruptured wide-necked intracranial aneurysms. More clinical data with longer follow-up are needed to establish the role of Y-stent coiling in ruptured aneurysms.

A study of residential environment and life for aging society - The condition of the living relationship between parent and child and its trend - (고령화 사회에 있어서 거주환경과 주생활에 관한 조사연구 - 노부모와 자녀간의 거주형태의 실태 및 동향 -)

  • Lim, Hi-Kyung;Imai, Noriko
    • Korean Journal of Human Ecology
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    • v.14 no.3
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    • pp.491-504
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    • 2005
  • This research studies the residential environment of the elderly and its trend. Our main focus is on the residential condition and its type between parents and their child/ren in korea which has already entered the aging society. The results are as follows: (1) This paper finds that the residence type of the households with elderly people becomes multifarious, as in a two-generation household, a couple and their single child, a couple family, etc. (2) The parents living separately from their child/ren account for 63.3%, which is becoming predominant in the residence type of the elderly. On the other hand, those living with their child/ren take up merely 24.5%. Thus, we can infer that the number of the parents with the former type is on the increase. (3) The residence type in reality is different from the one intended by elderly people, so we can estimate future change in the residence type. (4) The residence type varies, as in living together with young family, living separately from young family, separation at a distance, etc. In conclusion, we need appropriate living programs for each various residence type between elderly people and their children.

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Factors Influencing Unmarried Mothers' Parenting Stress: Based on Depression, Social Support, and Health Perception (미혼모의 양육 스트레스 영향요인: 우울, 사회적 지지, 건강지각을 중심으로)

  • Oh, Eun Jeong;Kim, Hye Young
    • Women's Health Nursing
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    • v.24 no.2
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    • pp.116-125
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    • 2018
  • Purpose: To identify factors affecting parenting stress of unmarried mothers. Methods: The subjects were 108 unmarried women who were parenting their children under the age of six. The data was collected from December 15, 2016 to March 5, 2017. The instruments consisted of self-reported questionnaires that included93 items: 21 on depression, 16 on social support, 20 on health perception, and 36 on parenting stress. The collected data were analyzed by t-test, ANOVA, Pearson correlations, and hierarchical multiple regression. Results: The factors influencing parenting stress were health perception (${\beta}=-.55$, p<.001), evaluative support (${\beta}=-.42$, p=.005), informative support (${\beta}=-.35$, p=.040), emotional support (${\beta}=-.24$, p=.045), partner support (${\beta}=-.20$, p=.048), and depression (${\beta}=.14$, p=.033), and the explanatory power was 57%. Conclusion: In order to alleviate the parenting stress of unmarried mothers, it is necessary to develop programs considering the physical, psychological, and social factors of unmarried mothers. Their subjective assessment of their health can increase or decrease their parenting stress, so it is necessary to develop parenting-stress intervention focusing on health perception.

Circadian Changes in the Pharmacokinetics of Acebutolol Orally Administered to Rabbits

  • Lee, Chong-Ki;Choi, Jun-Shik
    • Journal of Pharmaceutical Investigation
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    • v.38 no.3
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    • pp.151-155
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    • 2008
  • Circadian variations of acebutolol and its main metabolite, diacetolol pharmacokinetics were studied after a single oral administration of acebutolol (10 mg/kg) to eight rabbits at 10 : 00 AM (in the morning) and 10 : 00 PM (at night). The plasma concentration profiles of acebutolol were significantly different (P<0.05) between 10 : 00 AM and 22 : 00 PM, suggesting circadian variations of pharmacokinetic behaviors. A significant circadian rhythm of pharmacokinetic parameters was noted in rabbits, showing higher total body clearance (CL/F), and lower the area under the plasma concentration-time curves (AUC) of acebutolol than that at night. The half-life ($t_{1/2}$) of acebutolol and diacetolol were also significantly shorter in the morning than at night (P<0.05). Metabolite-parent AUC ratio at night significantly decreased compared to in the morning, implying that night time could inhibit acebutolol metabolism than in the morning. From this study there was an administration-time difference of acebutolol pharmacokinetics in the rabbits. The optimized dosing regimen of acebutolol can be decided by considering circadian rhythm so that the effective therapies are established for patients.

Studies on Synthesis, Hydrolysis and Oral Absorption of Piperacillin Phthalidyl Ester (피페라실린프탈리딜에스텔의 합성, 가수분해 및 경구흡수에 관한 연구)

  • Park, Gee-Bae;Choi, Seung-Ho;Choi, Young-Wook;Kim, Johng-Kap
    • Journal of Pharmaceutical Investigation
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    • v.18 no.3
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    • pp.139-144
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    • 1988
  • Piperacillin phthalidyl ester was synthesized by reacting piperacillin with triethylamine and bromophthalide in acetone and its chemical structure was determined by UV, IR, and PMR. The partition coefficient of the ester was increased and the ester was more lipophilic and less water soluble than piperacillin. The ester did not show the antimicrobial activity against Bacillus subtilis ATCC 6633 in vitro, but when hydrolyzed, the parent drug of ester, piperacillin, revealed antimicrobial activity in vivo. After a single oral dose of both piperacillin and the ester to rabbits, the serum piperacillin concentration was measured by bioassay. The ester exhibited improved pharmatokinetic characteristics: $T_{max}\;of\;2hr,\;C_{max}\;of\;4.26{\mu}g{\cdot}ml^{-1},K_{el}\;of\;0.057hr^{-1},\;and\;total\;AUC\;of\;85.42{\mu}g{\cdot}hr{\cdot}ml^{-1}$. Piperacillin on the other hand, did not exhibit any gastro-intestinal absorption.

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