• Title/Summary/Keyword: Sequencing Strategy

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Prediction Model with a Logistic Regression of Sequencing Two Arrival Flows (합류하는 두 항공기간 도착순서 결정에 대한 로지스틱회귀 예측 모형)

  • Jung, Soyeon;Lee, Keumjin
    • Journal of the Korean Society for Aviation and Aeronautics
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    • v.23 no.4
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    • pp.42-48
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    • 2015
  • This paper has its purpose on constructing a prediction model of the arrival sequencing strategy which reflects the actual sequencing patterns of air traffic controllers. As the first step, we analyzed a pair-wise sequencing of two aircraft entering TMA from different entering points. Based on the historical trajectory data, several traffic factors such as time, speed and traffic density were examined for the model. With statistically significant factors, we constructed a prediction model of arrival sequencing through a binary logistic regression analysis. With the estimated coefficients, the performance of the model was conducted through a cross validation.

Probabilistic Model for Air Traffic Controller Sequencing Strategy (항공교통관제사의 항공기 합류순서결정에 대한 확률적 예측모형 개발)

  • Kim, Minji;Hong, Sungkwon;Lee, Keumjin
    • Journal of the Korean Society for Aviation and Aeronautics
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    • v.22 no.3
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    • pp.8-14
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    • 2014
  • Arrival management is a tool which provides efficient flow of traffic and reduces ATC workload by determining aircraft's sequence and schedules while they are in cruise phase. As a decision support tool, arrival management should advise on air traffic control service based on the understanding of human factor of its user, air traffic controller. This paper proposed a prediction model for air traffic controller sequencing strategy by analyzing the historical trajectory data. Statistical analysis is used to find how air traffic controller decides the sequence of aircraft based on the speed difference and the airspace entering time difference of aircraft. Logistic regression was applied for the proposed model and its performance was demonstrated through the comparison of the real operational data.

A Versatile Method for DNA Sequencing of Unpurified PCR Products using an Automated DNA Sequencer and Tailed or Nested Primer Labeled with Near-infrared Dye: A Case Study on the Harmful Dinoflagellate Alexandrium

  • Ki Jang-Seu;Han Myung-Soo
    • Fisheries and Aquatic Sciences
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    • v.9 no.2
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    • pp.70-74
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    • 2006
  • DNA sequence-based typing is considered a robust tool for the discrimination of dinoflagellate species because of the availability of extensive rDNA sequences. Here, we present a rapid, cost-effective DNA-sequencing technique for various PCR products. This sequencing strategy relies on 'nested' or 'tailed' primer labeled with near-infrared dye, and uses a minimal volume of unpurified PCR product (ca. $5{\mu}L$) as the DNA template for sequencing reactions. Reliable and accurate base identification was obtained for several hundred PCR fragments of rRNA genes. This quick, inexpensive technique is widely applicable to sequence-based typing in clinical applications, as well as to large-scale DNA sequencing of the same genomic regions from related species for studies of molecular evolution.

Solving the Constrained Job Sequencing Problem using Candidate Order based Tabu Search (후보순위 기반 타부 서치를 이용한 제약 조건을 갖는 작업 순서결정 문제 풀이)

  • Jeong, Sung-Wook;Kim, Jun-Woo
    • The Journal of Information Systems
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    • v.25 no.1
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    • pp.159-182
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    • 2016
  • Purpose This paper aims to develop a novel tabu search algorithm for solving the sequencing problems with precedence constraints. Due to constraints, the traditional meta heuristic methods can generate infeasible solutions during search procedure, which must be carefully dealt with. On the contrary, the candidate order based tabu search (COTS) is based on a novel neighborhood structure that guarantees the feasibility of solutions, and can dealt with a wide range of sequencing problems in flexible manner. Design/methodology/approach Candidate order scheme is a strategy for constructing a feasible sequence by iteratively appending an item at a time, and it has been successfully applied to genetic algorithm. The primary benefit of the candidate order scheme is that it can effectively deal with the additional constraints of sequencing problems and always generates the feasible solutions. In this paper, the candidate order scheme is used to design the neighborhood structure, tabu list and diversification operation of tabu search. Findings The COTS has been applied to the single machine job sequencing problems, and we can see that COTS can find the good solutions whether additional constraints exist or not. Especially, the experiment results reveal that the COTS is a promising approach for solving the sequencing problems with precedence constraints. In addition, the operations of COTS are intuitive and easy to understand, and it is expected that this paper will provide useful insights into the sequencing problems to the practitioners.

The Spreading Strategy of Environmental Education Based on the Status of Selecting Rate of Environment Subject in Secondary School (중등학교 환경교과 선택현황에 기초한 환경교육 확산방안)

  • Eom, Eun-Hui;Lee, Su-Jong;Kang, You-Jeong
    • Hwankyungkyoyuk
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    • v.17 no.1
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    • pp.133-143
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    • 2004
  • This study aims to explore the ways in spreading and maturing of environmental Education(EE) in secondary school. To deal with this issue, researchers investigate the actual conditions of EE and grope for the ways in spreading and maturing of EE. According to investigation, the selecting rate of environment subject in secondary school is about 3%(compared selecting rate of other subject matters) in 2003. Based on the result, this study suggests followings. First, sequencing strategy of EE curriculum will be expected very efficaciously. Secondly, there is need to empasize daily experiences of EE beyond the formal subject matter. Thirdly and ultimately, thers is need to reform school curriculum centered EE. Moreover, there is need to empasize teacher education for the environment not only pre service but also in-service teacher training.

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The strategy and current status of Brassica rapa genome project (배추 유전체 염기서열 해독 전략과 현황)

  • Mun, Jeong-Hwan;Kwon, Soo-Jin;Park, Beom-Seok
    • Journal of Plant Biotechnology
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    • v.37 no.2
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    • pp.153-165
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    • 2010
  • Brassica rapa is considered an ideal candidate to act as a reference species for Brassica genomic studies. Among the three basic Brassica species, B. rapa (AA genome) has the smallest genome (529 Mbp), compared to B. nigra (BB genome, 632 Mbp) and B. oleracea (CC genome, 696 Mbp). There is also a large collection of available cultivars of B. rapa, as well as a broad array of B. rapa genomic resources available. Under international consensus, various genomic studies on B. rapa have been conducted, including the construction of a physical map based on 22.5X genome coverage, end sequencing of 146,000 BACs, sequencing of >150,000 expressed sequence tags, and successful phase 2 shotgun sequencing of 589 euchromatic region-tiling BACs based on comparative positioning with the Arabidopsis genome. These sequenced BACs mapped onto the B. rapa genome provide beginning points for genome sequencing of each chromosome. Applying this strategy, all of the 10 chromosomes of B. rapa have been assigned to the sequencing centers in seven countries, Korea, UK, China, India, Canada, Australia, and Japan. The two longest chromosomes, A3 and A9, have been sequenced except for several gaps, by NAAS in Korea. Meanwhile a China group, including IVF and BGI, performed whole genome sequencing with Illumina system. These Sanger and NGS sequence data will be integrated to assemble a draft sequence of B. rapa. The imminent B. rapa genome sequence offers novel insights into the organization and evolution of the Brassica genome. In parallel, the transfer of knowledge from B. rapa to other Brassica crops would be expected.

An Endosymbiotic Evolutionary Algorithm for Balancing and Sequencing in Mixed-Model Two-Sided Assembly Lines (혼합모델 양면조립라인의 밸런싱과 투입순서를 위한 내공생 진화알고리즘)

  • Jo, Jun-Young;Kim, Yeo-Keun
    • Journal of the Korean Operations Research and Management Science Society
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    • v.37 no.3
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    • pp.39-55
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    • 2012
  • This paper presents an endosymbiotic evolutionary algorithm (EEA) to solve both problems of line balancing and model sequencing in a mixed-model two-sided assembly line (MMtAL) simultaneously. It is important to have a proper balancing and model sequencing for an efficient operation of MMtAL. EEA imitates the natural evolution process of endosymbionts, which is an extension of existing symbiotic evolutionary algorithms. It provides a proper balance between parallel search with the separated individuals representing partial solutions and integrated search with endosymbionts representing entire solutions. The strategy of localized coevolution and the concept of steady-state genetic algorithms are used to improve the search efficiency. The experimental results reveal that EEA is better than two compared symbiotic evolutionary algorithms as well as a traditional genetic algorithm in solution quality.

Storing Digital Information in Long-Read DNA

  • Ahn, TaeJin;Ban, Hamin;Park, Hyunsoo
    • Genomics & Informatics
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    • v.16 no.4
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    • pp.30.1-30.6
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    • 2018
  • There is urgent need for effective and cost-efficient data storage, as the worldwide requirement for data storage is rapidly growing. DNA has introduced a new tool for storing digital information. Recent studies have successfully stored digital information, such as text and gif animation. Previous studies tackled technical hurdles due to errors from DNA synthesis and sequencing. Studies also have focused on a strategy that makes use of 100-150-bp read sizes in both synthesis and sequencing. In this paper, we a suggest novel data encoding/decoding scheme that makes use of long-read DNA (~1,000 bp). This enables accurate recovery of stored digital information with a smaller number of reads than the previous approach. Also, this approach reduces sequencing time.

Aeration control based on respirometry in a sequencing batch reactor (호흡률에 기반한 연속회분식반응조의 포기공정 제어)

  • Kim, Donghan;Kim, Sunghong
    • Journal of Korean Society of Water and Wastewater
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    • v.32 no.1
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    • pp.11-18
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    • 2018
  • As the sequencing batch reactor process is a time-oriented system, it has advantages of the flexibility in operation for the biological nutrient removal. Because the sequencing batch reactor is operated in a batch system, respiration rate is more sensitive and obvious than in a continuous system. The variation of respiration rate in the process well represented the characteristics of biological reactions, especially nitrification. The respiration rate dropped rapidly and greatly with the completion of nitrification, and the maximum respiration rate of nitrification showed the activity of nitrifiers. This study suggested a strategy to control the aeration of the sequencing batch reactor based on respirometry. Aeration time of the optimal aerobic period required for nitrification was daily adjusted according to the dynamics of respiration rate. The aeration time was mainly correlated with influent nitrogen loadings. The anoxic period was extended through aeration control facilitating a longer endogenous denitrification reaction time. By respirometric aeration control in the sequencing batch reactor, energy saving and process performance improvement could be achieved.

Exome Sequencing in Mendelian Disorders (엑솜 염기서열 분석 방법을 이용한 단일유전자질환의 원인 유전자 발굴)

  • Lee, Jong-Keuk
    • Journal of Genetic Medicine
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    • v.7 no.2
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    • pp.119-124
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    • 2010
  • More than 7,000 rare Mendelian diseases have been reported, but less than half of all rare monogenic disorders has been discovered. In addition, the majority of mutations that are known to cause Mendelian disorders are located in protein-coding regions. Therefore, exome sequencing is an efficient strategy to selectively sequence the coding regions of the human genome to identify novel genes associated with rare genetic disorders. The "exome" represents all of the exons in the human genome, constituting about 1.5% of the human genome. Exome sequencing is carried out by targeted capture and intense parallel sequencing. After the first report of successful exome sequencing for the identification of causal genes and mutations in Freeman Sheldon syndrome, exome sequencing has become a standard approach to identify genes in rare Mendelian disorders. Exome sequencing is also used to search the causal genes and variants in complex diseases. The successful use of exome sequencing in Mendelian disorders and complex diseases will facilitate the development of personalized genomic medicine.