• 제목/요약/키워드: Sequenced

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Cloning and Gene Manipulation of a cDNA Encoding A Cellulase Produced by the Mulberry Longicorn Beetle, Apriona germari

  • Kim, Yong-Soon;Lee, Sung-Jin;Sohn, Bong-Hee;Kang, Pil-Don;Lee, Sang-Uk;Jin, Byung-Rae
    • 한국잠사학회:학술대회논문집
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    • 한국잠사학회 2003년도 International Symposium of Silkworm/Insect Biotechnology and Annual Meeting of Korea Society of Sericultural Science
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    • pp.157-159
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    • 2003
  • We have cloned and sequenced the cDNA coding fur a cellulase from the mulberry longicorn beetle, Apriona germari, with the polymerase chain reaction. And then we have constructed the recombinant plasmid vector for Bombyx mori transfomation experiment. (omitted)

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Transcriptome Analysis in the Midgut of the Earthworm (Eisenia andrei) using Expressed Sequence Tags

  • Lee, Myung-Sik;Cho, Sung-Jin;Lee, Jong-Ae;Moon, Joo-Sik;Cho, Hyun-Ju;Park, Bum-Joon;Kim, Seong-Ki;Choo, Jong-Kil;Park, Soon-Cheol
    • 한국잠사학회:학술대회논문집
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    • 한국잠사학회 2003년도 International Symposium of Silkworm/Insect Biotechnology and Annual Meeting of Korea Society of Sericultural Science
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    • pp.144-144
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    • 2003
  • In order to understand the expression profile of earthworm midgut, we analyzed 1255 expressed sequence tags (ESTs) derived from earthworm midgut cDNA library. Among 1255 ESTs analyzed, 537 (42.8%) ESTs represented 231 unique genes of which 168 ESTs were singletons and 63 ESTs represented by two or more ESTs. A total of 571 unknown ESTs showed no significant homology. The remaining 147 (11.7%) ESTs whose lengths were less than 150 bp were removed. Among 231 identified unique genes, 168 genes (72.7%) were sequenced only once. (omitted)

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PCR을 이용한 우리나라에서 발견되는 얼룩날개모기속 모기의 종 동정 (Species identification of the Anopheles kyrcanus complex found in Korea using PCR)

  • 용태순;이한일;이인용;이종원;황의욱
    • 한국건강관리협회지
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    • 제4권1호
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    • pp.68-74
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    • 2006
  • For identification of four sibling species of the Anopheles hyrcanus complex found in Korea, the 5.8 rDNA-ITS2-28S rDNA region of each species was sequenced and the species-specific primers wee designed The amplified PCR products obtained from each species were analyzed by agarose gel electrophoresis. The result showed a single species- specific band, I.e. 559bp, 432bp, 322bp and 192bp for An. sinensis, An. sp., An. lesteri and An. pullus, respectively. In conclusion, the species-specific PCR primers designed from ITS2 variable regions functioned successfully and specifically, and can be applied as a useful tool for identifying species of the Anopheles hyrcanus complex found in Korea.

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Cephalosporin C 생물전환을 위한 Trigonopsis variabilis (ATCC10679) 변이균주의 간편한 선별 및 D-amino acid oxidase 유전자 배열 (Rapid Screening of Mutant Strains of Trigonopsis variabilis (ATCC10679) for Cephalosporin C Bioconversion and Sequences of D-amino acid oxidase Genes)

  • 강용호;박선영
    • KSBB Journal
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    • 제14권2호
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    • pp.235-240
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    • 1999
  • Trigonopsis variabilis ATCC10679 (TW)의 변이균주를 선별하기 위하여 쉽고 간편한 균주 선별방법을 개발하였다. 변이 균주(T26)의 D-Amino acid oxidase (D-AAO)는 야생균주(TW)의 D-AAO 효소보다 cephalosporin C에 대한 기질특이성이 약 30% 높았다. 이들 두 균주에서 D-AAO 유전자를 클로닝하여 각 유전자를 비교해본 결과 811번 우치의 T가 C로 변경되었으며 이에 따른 아미노산은 Phe-258이 Ser-258로 바뀌었다.

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Cloning and Expression of a Serine Proteinase Gene Fragment from Acanthamoeba culbertsoni

  • Park, Ki-Won;Kim, Tong-Soo;Na, Byoung-Kuk;Song, Chul-Yong
    • BMB Reports
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    • 제31권3호
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    • pp.303-306
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    • 1998
  • Serine proteinase cDNA fragment from protozoan parasite Acanthamoeba culbertsoni was amplified by the reverse transcription-polymerase chain reaction (RTPCR) using degenerate oligonucleotide primers derived from conserved serine proteinase sequences. The amplified DNA fragment was subcloned and sequenced. The sequence analysis and alignment showed significant sequence similarity to other eukaryotic serine proteinases and conservation of the His, Asp, and Ser residues that form the catalytic triad. The cDNA fragment was cloned into the pGEMEX-1 expression vector and expressed in Escherichia coli. A resulting fusion protein of 56 kDa had proteolytic activity. The fusion protein reacted with sera of mice immunized with purified serine proteinase of A. culbertsoni in Western blot. Immune recognition of the fusion protein by mouse antisera suggested that the fusion protein may be valuable as a diagnostic reagent.

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Cloning, Sequencing and Expression of dTDP-D-Glucose 4,6-Dehydratase Gene from Streptomyces antibioticus $T\ddot{u}99$, a Producer of Chlorothricin

  • Sohng, Jae-Kyung;Yoo, Jin-Cheol
    • BMB Reports
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    • 제29권3호
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    • pp.183-191
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    • 1996
  • DNA fragments, homologous to the dTDP-D-glucose 4,6-dehydratase gene, obtained from the genomic DNA of Streptomyces antibioticus $T\ddot{u}99$, a producer of the unusual macrolide antibiotic chlorothricin, were cloned and sequenced. This dehydratase gene was designated as oxil. The coding region of the oxil gene is composed of 987 bp, and analysis of the DNA sequence data reveals sequences for the gene products of 329 amino acids (molecular weight of 36,037). The deduced amino acids are 59% identical to the StrE, dTDP-D-glucose 4,6-dehydratase from the streptomycin pathway. The oxil's function was examined by expressing it in E. coli using the T7 RNA polymerase/promoter system (pRSET) to produce an active fusion protein including a his tag. This enzyme shows specificity of substrate, specific only to dTDP-D-glucose.

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자동화 시스템의 관리제어 설계를 위한 새로운 모듈화 기법 (New Modularization Method to Design Supervisory Control of Automated Laboratory Systems)

  • 정태영
    • 한국생산제조학회지
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    • 제23권1호
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    • pp.38-47
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    • 2014
  • This paper describes the application of discrete event systems theory to the design of an automated laboratory system. Current automated laboratory systems typically consist of several interacting processes that must be carefully sequenced to avoid any possible process conflicts. Discrete Event Systems (DES) theory and Supervisory Control Theory (SCT) can be applied together as effective methods of modeling the system dynamics and designing supervisory controllers to precisely sequence the many processes that such systems might involve. Classical approaches to supervisory controller design tend to result in complex controller structures that are difficult to implement, maintain, and upgrade. In this paper, a new approach to designing supervisory controllers for automated laboratory systems is introduced. This new approach uses a modular controller structure that is easier to implement, maintain, and upgrade, and deals with "state explosion" issues in a novel and efficient way.

Ribosomal Protein S4 Genes in Macaca fuscata: Sequence, Evolution, and Phylogeny

  • Kim, Heui-Soo
    • Journal of Life Science
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    • 제11권1호
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    • pp.34-38
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    • 2001
  • The cDNA encoding ribosomal protein S4(RPS 4) from an ovary cDNA library of the Japanese monkey (Macaca fuscata) was cloned and sequenced. The RPS4X gene from monkey X chromosome encodes a deduced protein of 263 amino acids and share 99.1% cDNA sequence similarity and 100% amino acid sequence identify with the human RPS4X. Rate of synonymous substitution was higher in RPS4Y than in RPS4X in comparison to the monkey and human. The ratio of synonymous and nonsynonymous substitutions per site indicated that directional selection has nor occurred in RPS4 genes. Phylogenetic analysis using the neighbor-joining method revealed that X and Y-linked RPS4 genes have evolved independently.

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Molecular Cloning and Characterization of the ${\beta}-Galactosidase$ Gene from Bifidobacterium adolescentis Int57

  • Park, Myeong-Soo;Yoon, Hyeon-Jin;Rhim, Seong-Lyul;Ji, Geun-Eog
    • Journal of Microbiology and Biotechnology
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    • 제11권1호
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    • pp.106-111
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    • 2001
  • A ${\beta}-galactosidase$ gene of Bifidobacterium adolescentis Int57 (INT57) was cloned using the shotgun method. The sequence of the ${\beta}-galactosidase$ gene existing in the sequenced 3,260-bp fragment showed higher than 40% homology with other bacterial ${\beta}-galactosidase$ genes. The expression in Escherichia coli suggested that the ${\beta}-galactosidase$ might have a monomeric, dimeric, or tetrameric protein structure. This is probably the first peer-reviewed sequence analysis of the ${\beta}-galactosidase$ gene of the genus Bifidobacterium.

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Purification of the Three-subunit, Recombinant Bacillus pasteurii Urease Expressed in Escherichia coli

  • Lee, Ji Hyun;Sang Dal Kim;Mann Hyung Lee
    • Journal of Microbiology and Biotechnology
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    • 제6권1호
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    • pp.26-29
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    • 1996
  • The genes coding for the urease of alkalophilic Bacillus pasteurii have been previously cloned and recently sequenced. (You, J. H., B. H. Song, J. H. Kim, M. H. Lee, and S. D. Kim (1995) Molecules and Cells 5, 359-369.) The recombinant Bacillus pasteurii urease expressed in an E. coli HB101 strain was purified 31.2 fold by using combinations of anion-exchange and hydrophobic chromatography followed by Mono-Q chromatography on a FPLC. In spite of the presence of three discrete structural peptide genes in the Bacillus pasteurii urease gene cluster, only one or two enzyme subunits have been observed to date. Here we report for the first time that the recombinant Bacillus pasteurii urease expressed in a E. coli strain consists of three distinct subunits. One large subunit was estimated to be of $M_r$=65, 200 and the two small-subunit peptides are of $M_r$=14, 500 and $M_r$=13, 700, respectively.

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