• Title/Summary/Keyword: Semi-automated segmentation

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Automated Segmentation of the Lateral Ventricle Based on Graph Cuts Algorithm and Morphological Operations

  • Park, Seongbeom;Yoon, Uicheul
    • Journal of Biomedical Engineering Research
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    • v.38 no.2
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    • pp.82-88
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    • 2017
  • Enlargement of the lateral ventricles have been identified as a surrogate marker of neurological disorders. Quantitative measure of the lateral ventricle from MRI would enable earlier and more accurate clinical diagnosis in monitoring disease progression. Even though it requires an automated or semi-automated segmentation method for objective quantification, it is difficult to define lateral ventricles due to insufficient contrast and brightness of structural imaging. In this study, we proposed a fully automated lateral ventricle segmentation method based on a graph cuts algorithm combined with atlas-based segmentation and connected component labeling. Initially, initial seeds for graph cuts were defined by atlas-based segmentation (ATS). They were adjusted by partial volume images in order to provide accurate a priori information on graph cuts. A graph cuts algorithm is to finds a global minimum of energy with minimum cut/maximum flow algorithm function on graph. In addition, connected component labeling used to remove false ventricle regions. The proposed method was validated with the well-known tools using the dice similarity index, recall and precision values. The proposed method was significantly higher dice similarity index ($0.860{\pm}0.036$, p < 0.001) and recall ($0.833{\pm}0.037$, p < 0.001) compared with other tools. Therefore, the proposed method yielded a robust and reliable segmentation result.

Convenient Semi-Automatic Segmentation Tool

  • Kim, Dong-Sung
    • Journal of Biomedical Engineering Research
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    • v.26 no.6
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    • pp.407-412
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    • 2005
  • Convenience is one of the most important factors in medical image segmentation. Convenience is defined by compiling opinions from radiologists, and can be described as controllable maximum automation on the condition of producing only accurate results. The components of convenience are inclusive automation and inclusive modification. Inclusive modification consists of verify-and-confirm, undo-redo, exchange of segmentation methods, and intelligent modification tools. Inclusive automation is composed of automatic selection of a method, automatic selection of a confident segment, and automated chores. The convenient segmentation tool has been developed to segment X-ray images for orthopedic surgery, and has received an excellent evaluation from radiologists.

Semi-automated Approach to Hippocampus Segmentation Using Snake from Brain MRI

  • Al Shidaifat, Ala'a Ddin;Al-Shdefat, Ramadan;Choi, Heung-Kook
    • Journal of Korea Multimedia Society
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    • v.17 no.5
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    • pp.566-572
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    • 2014
  • The hippocampus has been known as one of the most important structure related to many neurological disorders, such as Alzheimer's disease. This paper presents the snake model to segment hippocampus from brain MRI. The snake model or active contour model is widely used in medical image processing fields, especially image segmentation they look onto nearby edge, localizing them accurately. We applied a snake model on brain MRI. Then we compared our results with an active shape approach. The results show that hippocampus was successfully segmented by the snake model.

Semi-automated Tractography Analysis using a Allen Mouse Brain Atlas : Comparing DTI Acquisition between NEX and SNR (알렌 마우스 브레인 아틀라스를 이용한 반자동 신경섬유지도 분석 : 여기수와 신호대잡음비간의 DTI 획득 비교)

  • Im, Sang-Jin;Baek, Hyeon-Man
    • Journal of the Korean Society of Radiology
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    • v.14 no.2
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    • pp.157-168
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    • 2020
  • Advancements in segmentation methodology has made automatic segmentation of brain structures using structural images accurate and consistent. One method of automatic segmentation, which involves registering atlas information from template space to subject space, requires a high quality atlas with accurate boundaries for consistent segmentation. The Allen Mouse Brain Atlas, which has been widely accepted as a high quality reference of the mouse brain, has been used in various segmentations and can provide accurate coordinates and boundaries of mouse brain structures for tractography. Through probabilistic tractography, diffusion tensor images can be used to map comprehensive neuronal network of white matter pathways of the brain. Comparisons between neural networks of mouse and human brains showed that various clinical tests on mouse models were able to simulate disease pathology of human brains, increasing the importance of clinical mouse brain studies. However, differences between brain size of human and mouse brain has made it difficult to achieve the necessary image quality for analysis and the conditions for sufficient image quality such as a long scan time makes using live samples unrealistic. In order to secure a mouse brain image with a sufficient scan time, an Ex-vivo experiment of a mouse brain was conducted for this study. Using FSL, a tool for analyzing tensor images, we proposed a semi-automated segmentation and tractography analysis pipeline of the mouse brain and applied it to various mouse models. Also, in order to determine the useful signal-to-noise ratio of the diffusion tensor image acquired for the tractography analysis, images with various excitation numbers were compared.

A semi-automated method for integrating textural and material data into as-built BIM using TIS

  • Zabin, Asem;Khalil, Baha;Ali, Tarig;Abdalla, Jamal A.;Elaksher, Ahmed
    • Advances in Computational Design
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    • v.5 no.2
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    • pp.127-146
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    • 2020
  • Building Information Modeling (BIM) is increasingly used throughout the facility's life cycle for various applications, such as design, construction, facility management, and maintenance. For existing buildings, the geometry of as-built BIM is often constructed using dense, three dimensional (3D) point clouds data obtained with laser scanners. Traditionally, as-built BIM systems do not contain the material and textural information of the buildings' elements. This paper presents a semi-automatic method for generation of material and texture rich as-built BIM. The method captures and integrates material and textural information of building elements into as-built BIM using thermal infrared sensing (TIS). The proposed method uses TIS to capture thermal images of the interior walls of an existing building. These images are then processed to extract the interior walls using a segmentation algorithm. The digital numbers in the resulted images are then transformed into radiance values that represent the emitted thermal infrared radiation. Machine learning techniques are then applied to build a correlation between the radiance values and the material type in each image. The radiance values were used to extract textural information from the images. The extracted textural and material information are then robustly integrated into the as-built BIM providing the data needed for the assessment of building conditions in general including energy efficiency, among others.

Detection Algorithm of Road Surface Damage Using Adversarial Learning (적대적 학습을 이용한 도로 노면 파손 탐지 알고리즘)

  • Shim, Seungbo
    • The Journal of The Korea Institute of Intelligent Transport Systems
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    • v.20 no.4
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    • pp.95-105
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    • 2021
  • Road surface damage detection is essential for a comfortable driving environment and the prevention of safety accidents. Road management institutes are using automated technology-based inspection equipment and systems. As one of these automation technologies, a sensor to detect road surface damage plays an important role. For this purpose, several studies on sensors using deep learning have been conducted in recent years. Road images and label images are needed to develop such deep learning algorithms. On the other hand, considerable time and labor will be needed to secure label images. In this paper, the adversarial learning method, one of the semi-supervised learning techniques, was proposed to solve this problem. For its implementation, a lightweight deep neural network model was trained using 5,327 road images and 1,327 label images. After experimenting with 400 road images, a model with a mean intersection over a union of 80.54% and an F1 score of 77.85% was developed. Through this, a technology that can improve recognition performance by adding only road images was developed to learning without label images and is expected to be used as a technology for road surface management in the future.