• Title/Summary/Keyword: Sea-sediment

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Host Vector Systems of Deep-sea Piezophilic Bacteria, and the Constructions of High Pressure Glow Cells

  • Sato, Takako;Kato, Chiaki
    • Proceedings of the Microbiological Society of Korea Conference
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    • 2007.05a
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    • pp.83-85
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    • 2007
  • Deep-sea bacteria are adapted to extreme environments, such as high pressures and cold temperatures. We have isolated many piezophiles which grow well even under high pressures from deep-sea sediment. Shewanella violacea DSS12 and Moritella japonica DSK1 have the ability to grow at up to 70 MPa, and those bacteria have unique mechanisms of gene expression in response to high pressure conditions. The combination of gene expression systems in piezophiles, like the high pressure-dependent promoters and GFP reporter gene, may reveal highly fluorescent cells when exposed to high hydrostatic pressure conditions. It is predicted that a novel bio-sensing system can be made to probe high pressure environments using living bacteria. First, gene transformation into our piezophiles, strains DSS12 and DSK1, were examined. Eschericha coli S17-1 was used for bacterial conjugation with those piezophiles. As a result, the broad host range vector, pKT231, and the shuttle vector, pTH10, were successfully introduced to DSS12 and DSK1, respectively. Next, The pressure regulated promoters from DSS12 and DSK1 were cloned into proper vectors and combined with GFP as a reporter gene downstream of each promoter. The transformants of DSK1 and DSS12 with the recombinant pTH10 and pKT231 plasmid, which has cadA and glnA promoters (each of them is a pressure regulated promoter from DSK1 and DSS12, respectively) and GFP, were grown under high pressure and gene expression of GFP promoted by 50 MPa pressure was confirmed. This is a critical point to create a pressure-sensing bacteria, as the "High Pressure Glow Cells", which will indicate the level of environmental pressure using fluorescence of GFP as a reporter gene.

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The faunal composition of meiobenthic community in the deep-sea sediment, northeastern Pacific Ocean (북동 태평양 심해저퇴적물에 서식하는 중형저서생물의 군집조성)

  • Kim, Dong-Sung
    • The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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    • v.2 no.1
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    • pp.42-47
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    • 1997
  • This study was carried out to investigate the faunal composition and distribution pattern of meiobenthic community in the deep sea sediments of northeastern Pacific Ocean. Faunal samples were collected at 10 stations using a multiple corer and a spade type box corer during May 1996. A total of 18 meiofaunal groups were found, and Sarcomastigophora was the most dominant group which accounted for 35.8% of total meiofaunal abundance. Nematoda (30.8%), Nauplius larvae of Crustacea (11.9%), Ciliophora (6.8%) and Harpacticoida (3.0%) which were also important components of the meiofaunal community. All of these five faunal groups comprised more than 90% of total meiofauna. The highest density of 195 ind./10 $cm^2$ was found at St. 4 (4960 m water depth), but the lowest one, 85 ind./10 $cm^2$ at St. 1 (4969 m water depth). The overall mean density of meiofauna was estimated as $1.34{\times}10^5\;ind./m^2$. The abundance of meiofauna showed a slow decreasing trend along the water depth. The highest density was observed in the upper 1 cm and density decreased drastically with increasing depth from the surface.

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Standing Stocks and Spatial Distribution of Meiofauna on Deep-sea Sediment in an Environmental Impact Experiment of a Candidate Site for Manganese Nodule Development, NE Pacific (북동태평양 Clarion-Clipperton 균열대의 망간단괴 채광을 위한 환경충격시험 예정 지역 심해 해저면에 서식하는 중형저서생물 현존량 및 공간 분포 특성)

  • Min, Won-Gi;Rho, Hyun Soo;Kim, Dongsung
    • Journal of Environmental Science International
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    • v.29 no.11
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    • pp.1125-1139
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    • 2020
  • This study investigated the distributional pattern of meiobenthos associated with future deep-sea mining in the Korea Deep Ocean Study area present in the Clarion-Clipperton Fracture Zone (CCFZ) located in the southeastern part of the North Pacific Ocean. Standing stocks of meiobenthos were investigated in benthic impact experiment sites (BIS) and Korea Institute of Ocean Science & Technology long-term monitoring (KOMO) sites during the 2008-2014 annual field survey. A total of 14 taxa of meiobenthos were identified. Nematodes were the most abundant taxon (60-86%). Harpacticoid copepods (5-26%) and benthic foraminifera (1-12%) were also dominant at all sites. The total meiobenthic densities varied from 4 to 150 ind./10 cm2. The mean value of total meiobenthic abundance was higher at BIS than at KOMO sites, but there was no significant difference between the two sites. The mean values of the number of taxa and biomass at BIS and KOMO sites were similar. The mean abundance of nematodes that were the most dominant taxa was also higher at BIS than at KOMO sites. The standing stocks in our study sites were relatively lower than those previously reported at other CCFZ sites. These results seem to reflect a low organic concentration in the study area.

Characteristics of Molluscan Community Structure and Relationship between the Structure and Environmental Variables in Abyssal Plain of the East Sea (동해 심해저 연체동물 군집구조 특성 및 군집구조와 환경요인과의 상관성)

  • Son, Min Ho;Jung, Jik Young;Kim, Chang Joon;Choi, Ki Young
    • The Korean Journal of Malacology
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    • v.32 no.4
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    • pp.289-295
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    • 2016
  • Study on characteristics of the molluscan community structure and relationship between the structure and environmental variables in the abyssal plain of the East Sea was carried out for 5 years, starting from 2009 until the end of 2015 except 2010 and 2011. The water depth at the study site is approximately 1,600 m at minimum, and maximum depth of 2,000 m and a total of 16 molluscan species including Aplacophora, Gastropoda and Bivalvia were observed. Species with the highest biomass was Thyasira tokunagai, followed by Yoldiella philippiana which were observed at 9 sampling stations every year. Among 4 sampling stations having various depths (1,600/ 1,700/ 1,800/ 2,000 m), the highest diversity for species was observed at water depths of 1,600 m and 1,700 m, but found the lowest at 1,800 m. Both abundance and biomass were found to be negative correlations with water depth (p < 0.05), however, showed a positive correlation with the concentrations of organic matters (p < 0.01, p < 0.05). However, it is interesting to note that both Thyasira tokunagai (biomass, 82.6%; abundance, 44.1%) and Yoldiella philippiana (biomass, 15.9%; abundance, 4.7%) did not show distinctive correlations with water depth as well as concentrations of organic matters (p > 0.05). Therefore, it could be concluded that community structure of both Thyasira tokunagai and Yoldiella philippiana did not appear to be affected by water depth and concentrations of organic matters but geographical characteristics.

Seasonal Changes of Tidal-flat Sediments: Kwangyang Bay, South Coast of Korea (조간대 퇴적물의 계절적 변화 : 한국 남해안의 광양만)

  • 류상옥;김주용;이희준;조영길;안성모
    • The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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    • v.8 no.4
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    • pp.349-356
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    • 2003
  • A continuous monitoring of sedimentation rate and textural characteristics of surface sediments was carried out on the tidal flats in Kwangyang Bay, middle South Sea for two years on an every-two-monthly basis. This study shows that during the winter the tidal flats receive a thin surface layer of which texture becomes finer. In summer, the surface sediments were subject to rather abrupt erosion by occational typhoons and heavy rainfall resulting in a coarse-silt dominated texture. Due to nearly closed geomorphology of Kwangyang Bay, local waves created in the bay during winter are much subdued, in contrast to the rough wave climate and associated sedimentary cycle for open-type tidal flats in the Yellow Sea. In addition, unexpected artificial effects on the tidal-flat sedimentation by construction of a huge industrial complex along the shoreline of the bay are observed from a nearby tidal flat. Here, the sediments were consistently eroded without any sign of natural seasonal variations.

Two new free-living marine nematodes of the genus Belbolla (Nematoda, Enoplida, Enchelidiidae) from a shallow subtidal benthic habitat of the outermost islands of Korea

  • Hyun Soo Rho;Hyo Jin Lee;Heegab Lee;Chang Geun Choi
    • Korean Journal of Environmental Biology
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    • v.39 no.4
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    • pp.423-434
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    • 2021
  • Two new free-living marine nematodes of the genus Belbolla Andrássy, 1973 belonging to family Enchelidiidae are newly described based on specimens obtained from a shallow subtidal sediment of the western and southern outermost islands of Korea. Belbolla koreensis sp. nov. differs from other species of the genus by the combination of the following characteristics: longer body length (3,080-3,462 ㎛ long), eight oesophageal bulbs in the posterior region of pharynx, well-developed two winged precloacal supplements (anterior precloacal supplement slightly longer than posterior one: 47-59 ㎛ vs. 43-46 ㎛ long), strongly arcuated, very thick, L-shaped spicule (122-127 ㎛ long, 1.7-1.9 anal body diameter(a.b.d.) long) with three separated blunt distal tips, and well-developed relatively long cylindrical shaped gubernacular apophysis with blunt teeth covering two thirds of the dorsal margin (57-58 ㎛ long, 0.8-0.9 a.b.d. long). Belbolla hoonsooi sp. nov. is characterized by the following combination of characteristics: longer body length (3,494 ㎛ long), eight oesophageal bulbs in the posterior region of pharynx, well-developed two winged precloacal supplements (anterior precloacal supplement slightly longer than posterior one: 43 ㎛ vs. 36 ㎛ long), strongly arcuated, L-shaped spicule (119 ㎛ long, 1.5 a.b.d. long) with three separated blunt distal tip, and well-developed relatively long inverted triangle shaped gubernacular apophysis with blunt teeth covering half of the dorsal margin (45 ㎛ long, 0.6 a.b.d. long). Detailed morphological characteristics and illustrations of two new Belbolla nematodes from the Korean seawaters were provided by differential interference contrast microscopy. Comparative tables on biogeographical and morphological characteristics of Belbolla species are also provided herein.

Paleo-latitude of the Intertropical Convergence Zone in the Northeast Pacific during Late Cenozoic (신생대 후기 북동태평양 지역 적도수렴대의 위치변화)

  • Hyeong, Ki-Seong;Kim, Ki-Hyune;Chi, Sang-Bum;Yoo, Chan-Min
    • Ocean and Polar Research
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    • v.26 no.2
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    • pp.245-253
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    • 2004
  • The Intertropical Convergence Zone (ITCZ), where the southeast and northeast trade winds converge, is the effective climatological barrier that separates the southern and northern hemispheres in dust budget. Asian and N. American dusts dominate in fhe Pacific north of the ITCZ, while Central and S. American dust prevails south of the ITCZ. In order to understand the nature of latitudinal and depth-related variations of mineral composition in terms of relative position to the ITCZ, deep-sea core sediments were collected from $9^{\circ}N$ to $17^{\circ}N$ at a $2^{\circ}N$ interval along the $131.5^{\circ}W$ meridian and analyzed for mineral composition. The amount of illite in surface sediments decreases gradually from 65% at $17^{\circ}N\;to\;31^{\circ}N$ to 31% at 9f. In contrast, smectite increases from 11% to 56% southward. The observed mineralogical variation toward the ITCZ is attributed to the increased supply of volcaniclastic material transported via the southeast trade winds from the Central and South America source regions. Smectite-illite transition, a phenomenon that the amount of smectite increases over illite, occurs at around $10^{\circ}N$, the northern margin of the ITCZ. This result indicates that the change in latitudinal position of the ITCZ in geologic past could be recorded as a form of smectite-illite transition in deep-sea cores. The studied cores show down-core variation of mineral composition from illite-rich at the surface to smectite-rich clay suit at depths, similar to the latitudinal variation. The smectite-illite transitions observed in these cores are likely the records of changes in latitudinal position of the ITCZ. The depth and age of smectite-illite transition is getting shallower and younger toward equator, implying that the ITCZ was located farther north during late Tertiary and has shifted southward to the present position of $5^{\circ}N-10^{\circ}N$.

Gas hydrate stability field in the southwestern Ulleung Basin, East Sea (동해 울릉분지 남서부 해역에서의 가스 하이드레이트 안정영역)

  • Ryu Byong Jae;Don Sun woo;Chang Sung Hyong;Oh Jin yong
    • The Korean Journal of Petroleum Geology
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    • v.7 no.1_2 s.8
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    • pp.1-6
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    • 1999
  • Natural gas hydrate, a solid compound of natural gas (mainly methane) and water in the low temperature and high pressure, is widely distributed in permafrost region and deep sea sediments. Gas hydrate stability field (GHSF), which corresponds to the conditions of a stable existence of solid gas hydrate without dissociation, depends on temperature, pressure, and composition of gas and interstitial water. Gas hydrate-saturated sediment are easily recognized by the bottom simulating reflector (BSR), a strong-amplitude sea bottom-mimic reflector in seismic profiles. It is known that BSR is associated with the basal boundary of the GHSF, The purpose of this study is to define the GHSF and its occurrence in the southwestern part of Ulleung Basin, East Sea. The hydrothermal gradient is measured using the expandable bathythermograph (XBT) and the geothermal gradient data are utilized from previous drilling results for the adjacent area. By the laboratory work using methane and NaCl $3.0 wt{\%}$ solution, it is shown that the equilibrium pressures of the gas hydrate reach to 2,920.2 kPa at 274.15 K and to 18,090 kPa at 289.95 K for the study area. Consequently, it is interpreted that the lower boundary of the GHSF is about 210 m beneath 400-m-deep sea bottom and about 480 m beneath 1,100-m-deep sea bottom. The resultant boundary is well matched with the depth of the BSR obtained from the seismic data analysis for the study area.

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Distribution of Surface Sediments and Sedimentation Rates on the Tidal Flat of Muan Bay, Southwestern Coast, Korea (서해남부 무안만의 표층퇴적물의 분포와 조간대 퇴적률)

  • Ryu, Sang-Ock;Kim, Joo-Young;Chang, Jin-Ho
    • Journal of the Korean earth science society
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    • v.22 no.1
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    • pp.30-39
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    • 2001
  • To consider the distribution of the surface sediments and sedimentary processes in tidal flat after the construction of sea-walls in the semiclosed Muan Bay, the southwest coast of Korea, studies on the sediments and sedimentation rates along two transect lines from February 1999 to March 2000 were carried out. The surface sediments in the bay are classified into 5 facies on the basis of textural parameters. The gravelly sediments including the cobbles and pebbles deposited in the bay-mouth are relic sediments which are formed in nearshore and fluvial environments at the low stand of sea level. In addition, it is considered that the muddy sediments widely distributed on the tidal flat might be originated from suspended matter transported from several rivers and/or offshore. Although the sedimentation rates on the tidal flat vary with season, their estimation rates are -8.9 mm/yr on Line-GR and -48.9 mm/yr on Line-YH, respectively. The erosion-dominated processes in the tidal flat would be caused by strengthened ebb tides due to the decrease of tidal choking at Mokpogu and the migration of tidal currents at the bay-mouth. The hydrodynamical changes mentioned above are interpreted to be occurred after/before the construction of sea-dike/sea-walls in coastal zone of Mokpo.

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Distribution of Antifouling Agent Using Headspace Solid Phase Microextraction(HS-SPME) Method in Southwestern Coast of Korea (HS-SPME법을 이용한 한국 서남해 연안 해역에서의 방오제 분포 특성)

  • Han, Sang-Kuk
    • Journal of the Korean Society of Marine Environment & Safety
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    • v.18 no.2
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    • pp.85-93
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    • 2012
  • We study on the distribution characteristics of antifouling agents such as Sea-nine 211, Irgarol 1051, Diuron using HS-SPME method in southwestern coast of Korea. Short half-life of Sea-nine 211 was distributed in very low concentrations and/or below detection limits in all of the sampling points, both water and sediments samples. Irgarol 1051 was detected to have the highest concentration respectively $6.98{\mu}g/L$, 28.50 ng/g-dry wt in the seawater and sediments, and regional distribution characteristics did not appeared. Strong bioaccumulation and long half-life of Diuron was distributed higher concentration than in all sampling point and was analyzed to have the highest concentration(3882.22 ng/g-dry wt) Mo7(Mokpo)'s sediment. Irgarol 1051 and Diuron distributed in the shipbuilding industry and ship marina are located just at the point to found in high concentrations. In addition, the distribution of the antifouling agent materials were lower in concentration than in inner bay to outter bay in sediments. Antifouling agent materials from these results were contaminated high potential from port and shipbuilding industry located in inner bay.