• Proceedings of the Korean Society of Crop Science Conference
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• 2017.06a
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• pp.183-183
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• 2017

In the early part of rice growth, root volume primarily limits the amount of plant-accessible nitrogen (N). Therefore, knowledge of the root development is important for modeling N uptake of rice. The timing when the volume of rhizosphere cover the whole soil is also important to carry out timely top dressing. However, information about initial root expansion and associated N uptake is limited due to intrinsic technical difficulties in assessing below-ground processes. Some studies, however, showed a close relationship between below-ground root and above-ground leaf development, suggesting a possibility that above-ground attributes could serve as surrogates for the root processes. In this study, we investigated the relationship between below-ground and above-ground development of rice. Field experiments were conducted where we cultivated Koshihikari (a leading cultivar in Japan) for four different cropping schedules in 2012. In 2016, Gimbozu (HEG4) and three flowering time mutant lines of Gimbozu (X61 (se13), HS276 (ef7), DMG9 (se13, ef7)) were examined for a single season. Experiments were performed with three replications in a completely randomized design. We monitored ammonium-N concentration ([NH4+-N]) in soil solution by repeatedly taking samples from a porous tubing (10-cm long) vertically inserted at the most distant point from surrounding rice hills. Samples were taken in triplicate (= triplicate tubes) and every three days from transplanting in each experimental unit. For above-ground attributes, leaf area index (LAI) was measured in 2012, whereas soil coverage ratio was estimated by image processing in 2016. Results showed that [NH4+-N] increased gradually after transplanting and then rapidly decreased from a certain day. This distinct drop in [NH4+-N] informed us the timing at which the rice root system reached the point of porous tubing and thus essentially covered the whole soil volume. The LAI at the dropping point was about 0.43 regardless of the cropping schedules in 2012 experiment. In 2016, the coverage ratio at the N dropping point was within the range of 0.12 to 0.19 for four genotypes having different growth durations. In addition, the coverage ratios at seven weeks after the transplanting showed a good correspondence to LAI across the four genotypes. We therefore conclude that both LAI and coverage ratio may serve as robust indicators for root development and might be useful to estimate the timing when the root system fully cover the soil volume. Results obtained here will also contribute to develop models that can predict not only above-ground canopy development but also associated below-ground processes.

• Korean Journal of Soil Science and Fertilizer
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• v.30 no.3
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• pp.257-264
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• 1997

To find out the influence of different rice varieties on the emission of methane in the soil and the exudation of carbohydrates from root, the experiment was conducted on a fine silty, mesic family of Aeric Fluventinc Haplaquepts (Jeonbug series). The varities of rise involved one early maturing variety of Japonica type(namweon) and three mid-to-late maturing varieties of Japonica type and one mid-to-late variety of Indica${\times}$Japonica crossed. The methane flux over the rice canopy was measured according to the closed chamber method modified by Shin and the methane concentration in the soil was measured using porous cup installed in the soil. The carbohydrate exudates from root were measured under nutrient solution culture. It was found that the methane flux tended to be lower in early maturing varieties than in the mid-to-late maturing varieties, lower in indica${\times}$Japonica crossed variety than in Japonica type varieties. There was positive correlation between the number of tillers and the weight of roots of rice plant and methane flux. The correlation, however, tended to be greater between the weight of roots and methane flux. There was no significant difference in the concentration of methane in the soil under different varieties of rice, excepting one variety, Kehwa under which methane concentration was highest. In case of carbohydrate exudation, early maturing variety tended to be higher than other varieties, although the opposite was the case in methane flux.

• Korean Journal of Soil Science and Fertilizer
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• v.20 no.4
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• pp.359-367
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• 1987

A method for evaluating bacterial chemotactic responses toward several single of combined sugars and sterile mucilage from the different rice cultivars had been tested. Bacterial genus of Azospirillum, Pseudomonas and Agrobacterium were specially identified from the histosphere of different rice cultivars and graminea grasses in saline and reclaimed saline paddy soil. To evaluate chemotaxis of these strains a modification of Fendrik channel method was used. Under this condition Azospirillum lipoferum Ecc 3-1 reacted stereoisomerically fomulating the single migration ring while Agrobacterium radiobacter Ecc 1-1 and Pseudomonas sp Ecc 4-1 did not. Strains specificities of chemotaxis to the single sugar such as D(+)-glucose and D(+)-fructose were less prominent than malic and citric acid. Chemotactic responses to the combined sugar such as D-galacturonic acid and the L-aspartate were found high attracting reaction than other combined sugars. Chemotaxis of associative $N_2$-fixing bacteria to the root exudates of different rice cultivars were differed among bacterial strains and rice cultivars.

• Korean Journal of Soil Science and Fertilizer
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• v.20 no.2
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• pp.193-197
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• 1987

Associative heterotrophic nitrogen fixing bacteria were identified by immunodiffusion method in the histosphere of Planta-ginaceae, Caryophllaceae, Gramineae, and two types of rice cultivars. Twenty four strains associative heterotrophic bacteria with high ARA (more than 10nmole/tube/hr) were isolated from the histosphere of grasses and rice.* Those strains were related with 8 species of Azospirillum, 11 species of Pseudomonas, 2 species of Klebsiella and 2 species of Agrobacterium. Among them Azospirillum sp. and Pseudomonas sp. were predominant in histosphere of grasses and rice cultivars. From the histosphere of Oryza sativa, and Sagina maxima, the strains of Azospirillum, Pseudomonas, Klebsiella, and Agrobacter were identified while Pseudomonas was identified from Ischaemum anthephoroides, Plantago lanceolata, Miscanthus sacchuriflorum, and only Azospirillum was identified from Zoisia sinica, respectively. Associative nitrogen fixing heterotrophic bacteria were more abundant in the histosphere of Oryza sativa and Sagina maxima than that of other grasses grown in saline and reclaimed saline paddy soil.

• Korean Journal of Soil Science and Fertilizer
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• v.39 no.6
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• pp.403-408
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• 2006

Fluvio-marine paddy soils in Korea consist of high silt content and have the hardpan located below 20~30 cm from surface soil. This properties cause poor rice rhizosphere conditions such as low permeability and porosity, high bulk density and hardness. The aims of this study was to investigate the effect of popped rice hulls compost(PRHC) on soil fertility changes in the Fluvio-marine plain paddy soils. Total nitrogen content and nitrogen mineralization rate of PRHC were 1.17 and 33.5, respectively, and its C/N ratio was 35.4. Application of PRHC increased the content of organic matter and exchangeable potassium and improved the bulk density and porosity. The content of $NH_4-N$ in soil was high in the PRHC plot until maximum tillering stage. An uptake amount of fertilized nitrogen was greater in standard fertilization plot at early growth stage, however, it was greater more in PRHC plots at the ripening period than in standard fertilization plot. Among the PRHC treated plots, uptake amount was the greatest in 50% PRHC plot during the all growth period. Nitrogen efficiencies were higher in PRHC plot during the all growth period. Rice yields in all PRHC plots were lower than in standard fertilization, however, the yield of 40% PRHC plot was similar with that of standard.

• Journal of Plant Biotechnology
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• v.46 no.3
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• pp.205-216
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• 2019

Since the RNA interference (RNAi) had been discovered in many organisms, small non-coding RNA-mediated gene silencing technology, including RNAi have been widely applied to analysis of gene function, as well as crop improvement. Despite the usefulness of RNAi technology, RNAi transgenic crops have various potential environmental risks, including off-target and non-target effects. In this study, we developed methods that can be effectively applied to environmental risk assessment of RNAi transgenic crops and verified these methods in 35S::dsRNAi_eGFP rice transgenic plant we generated. Off-target genes, which can be non-specifically suppressed by the expression of dsRNAi_eGFP, were predicted by using the published web tool, pssRNAit, and verified by comparing their expressions between wild-type (WT) and 35S::dsRNAi_eGFP transgenic rice. Also, we verified the non-target effects of the 35S:: dsRNAi_eGFP plant by evaluating horizontal and vertical transfer of small interfering RNAs (siRNAs) produced in the 35S::dsRNAi_eGFP plant into neighboring WT rice and rhizosphere microorganisms, respectively. Our results suggested that the methods we developed, could be widely applied to various RNAi transgenic crops for their environmental risk assessment.

• Proceedings of the Korean Society of Plant Pathology Conference
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• 2003.10a
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• pp.103.1-103
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• 2003

An antagonistic bacteria, Stenotrophomonas maitophilia BW-13 strain which was effectively inhibited mycerial growth of Bottom rot pathogen, Rhizoctonia solani PY-1 strain was isolated from the rhizosphere of the lettuce in Uiryeong-Gun, Gyeongsangnam-Do from 2002 to 2003. For the biological control, the most suitable inoculum and its density of pathogen, PY-1 strain ware tested prior biological control test, For the pathogenicity test, A inoculum (wheat bran)sawdust+rice bran+PDB) showing disease incidence of 100％ was selected as the most suitable inoculum, which showed more effective than B inoculum (sawdust＋rice bran＋DW) and mycelial disc. also, In selection of the amount of inoculum (40g, 50g, 60g, 70g, 80g), most suitable amount of inoculum of pathogen determined as 40g showing disease incidence of 80％. For the selection of effective microorganism to control bottom rot on lettuce, about 200 isolates were isolated from the diseased soil and lettuce leaves, and examined their antifungal activity to the pathogen on PDA. As the pots assay, BW-13 strain showed the highest control value as 90％, and followed by R-13 and R-26 strain as 80％ and 60％, respectively. Selected BW-13 isolates identified as 5. maltophilia (GeneBank accession no. AJ293473.1, 99％) by 16S rRNA sequencing. This is the first report on the biological control using by S. maltophilia to the bottom rot pathogen, Rhizoctonia solani PY-1 strain.

• Journal of Microbiology and Biotechnology
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• v.19 no.1
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• pp.99-107
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• 2009

Strain PUPC1 produces an antifungal protease as well as plant growth promoting enzymes such as 1-aminocyclopropane-1-carboxylate (ACC) deaminase and phosphatase. Morphological, cultural, and physiological characteristics as well as 16S rRNA gene-sequence-based phylogenetic analysis confirmed the taxonomic affiliation of PUPC1 as Chryseobacterium aquaticum. The optimum growth of PUPC1 was observed at pH 6.0 and $30^{\circ}C$, and maximum protease production was observed in medium B amended with 1% tryptone, 0.5% sucrose, and 0.005% $MnCl_2$. The protease was purified by ammonium sulfate precipitation, Sephadex G-75 gel filtration chromatography, and electroelution from preparative SDS-PAGE. The protease had a molecular mass of 18.5 kDa. The optimum pH and temperature stability of the protease were pH 5.0-10.0 and temperature $40-70^{\circ}C$. Chryseobacterium aquaticum PUPC1 and its protease showed a broad-spectrum antifungal activity against phytopathogenic fungi. Strain PUPC1 also exhibited plant growth promoting traits. The objective of the present investigation was to isolate a strain for agricultural application for plant growth promotion and biocontrol of fungal diseases.

• Korean Journal of Soil Science and Fertilizer
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• v.37 no.1
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• pp.41-45
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• 2004

A phosphate solubilizig bacterium, Pantoea agglomerans, was isolated from rhizosphere soils collected from Chungbuk area. A greenhouse experiment was conducted to study the effect of combined application of rock phosphate and P. agglomerans inoculation on plant growth and phosphate accumulation of rice (Oryza sativa L.). Apart from control that received no inputs, six treatments were planned as follows; 1) seed bacterization, 2) free cell inoculation and 3) bacteria immobilized beads inoculation, individually and in combination with 1 and 2.5 g of rock phosphate per pot. The results showed that plant growth and phosphate uptake were significantly enhanced as a result of bacterial inoculation. Bacterial inoculation in the form of immobilized beads and 1 g of rock phosphate was found to affect positively the rice plant growth and phosphorus accumulation than other treatments. The available phosphate concentration of the pot mixture also found improved as a result of P. agglomerans inoculation. A positive correlation was observed between the phosphate concentration in the pot mixture and phosphate accumulation in plant.

• Korean Journal of Environmental Agriculture
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• v.16 no.2
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• pp.119-123
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• 1997

This study was performed to evaluate the influence of composting process with an intermittent aeration on the variation of rhizosphere soil temperature, $CO_2$ and $NH_3$ release, and the growth reponse of tomato plantlet in traditional and composting greenhouse. As the temperature of composting materials increased, rhizosphere soil temperature in 30cm depth rose up to $32^{\circ}C$ at one week after introduction. This was $18^{\circ}C$ higher than that of traditional greenhouse. After 20 days of active composting, temperature of rhizosphere soil started to decrease and remained constant at $23^{\circ}C$ after 35 days. For the traditional greenhouse, the averaged temperature ranged at $14{\sim}15^{\circ}C$. This results showed that composting greenhouse had the greater effect on increasing the underground temperature. Average value of evoluted $CO_2$ from the composting greenhouse for 70 days was $782{\sim}1154ppm$. This was $1.7{\sim}2.6$ times higher than that of the traditional greenhouse with an average of $440{\sim}462ppm$. $NH_3$ release was highest during $2{\sim}10$ days in intermittent aerated composting and reached to 134 ppm maximum on the 5th day, then decreased rapidly, and maintained at $3{\sim}4ppm$ after 17 days. Increased photosynthesis due to the $CO_2$ gas and a favorable rhizosphere environment due to the increased underground temperature resulted in improved growth, yield, and Brix degree of tomato fruit.