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Analysis on the Amino Acid Distributions with Position in Transmembrane Proteins

  • Chi, Sang-Mun
    • Journal of the Korean Data and Information Science Society
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    • v.16 no.4
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    • pp.745-758
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    • 2005
  • This paper presents a statistical analysis on the position-specific distributions of amino acid residues in transmembrane proteins. A hidden Markov model segments membrane proteins to produce segmented regions of homogeneous statistical property from variable-length amino acids sequences. These segmented residues are analyzed by using chi-square statistic and relative-entropy in order to find position-specific amino acids. This analysis showed that isoleucine and valine concentrated on the center of membrane-spanning regions, tryptophan, tyrosine and positive residues were found frequently near both ends of membrane.

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Output Analysis for Steady-State Simulation Using Lyapunov Exponent in Chaos Theory (카오스 이론의 Lyapunov 지수를 응용한 안정상태 시뮬레이션의 출력분석)

  • Lee, Young-Hae;Oh, Hyung-Sool
    • Journal of Korean Institute of Industrial Engineers
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    • v.22 no.1
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    • pp.65-82
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    • 1996
  • This paper proposes a sequential procedure which can be used to determine a truncation point and run length to reduce or remove bias owing to artificial startup conditions in simulations aimed at estimating steady-state behavior. It is based on the idea of Lyapunov exponent in chaos theory. The performance measures considered are relative bias, coverage, estimated relative half-width of the confidence interval, and mean amount of deleted data.

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NEW QUANTITATIVE MEASURING TECHNIQUE FOR MICROLEAKAGE OF THE RESTORED TOOTH THROUGH 3D RECONSTRUCTION (3차원 재구성법을 이용한 수복물의 정량적 미세누출도 측정)

  • Ha, Sang-Yoon;Shin, Dong-Hoon
    • Restorative Dentistry and Endodontics
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    • v.29 no.5
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    • pp.413-422
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    • 2004
  • Established microleakage tests have their own disadvantages. In this study, 3D reconstruction method was tried to overcome these disadvantages. Four types of microleakage tests were used and relationships among them were estimated: penetrated dye volume: marginal adaptability: degree of dye penetration and relative penetrated length to cavity wall. Twenty-four Class V cavities were bulk filled with composite (Esthet X) following surface treatments: N group (no treatment): E group (etching only): T group (etching + Prime & Bond NT). 50% silver nitrate was used as a dye solution after thermocycling ($5^{\circ}C{\;}&{\;}55^{\circ}C$, 1.000 times). Teeth were serially ground with a thickness of 0.2 mm. Volume of dye penetration was estimated from a three-dimensionally reconstructed image with a software (3D-DOCTOR). Percentage of margin without gap was estimated from SEM and degree of dye penetration and the relative length of dye penetration to overall cavity wall were also estimated. ANOVA and Scheffe test for dye volume, Kruskal-Wallis and Mann-Whitney test for marginal quality, Spearman's rho test for checking of relationships among methods were used. The results were as follows: 1. Dye penetration could be seen from several directions, furthermore, its volumetric estimation was possible. 2. Reverse relationship was found between dye volume and marginal quality (r = -0.881/ p = 0.004). 3. Very low relationship was seen between dye volume and two-dimensional tests (degree of dye penetration and relative length). However, 2D evaluation methods showed high relationship (p = 0.002-0.054) each other. 4. Three times vertical section could be recommended as a 2D test.

Influence of Cu(II) on the Growth of Korean Tadpole, Rana nigromaculata (銅이온이 참개구리 幼生의 成長에 미치는 影響)

  • Park, Sang Ock;Sang Gi Kim;Soo Yeul Cho
    • The Korean Journal of Ecology
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    • v.7 no.4
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    • pp.232-238
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    • 1984
  • The author hatched the eggs of Korean frog, Rana nigromaculata in natural water, and reared the tadpoles in natural water as control group and in seven copper ion groups contaminated by 0.1, 0.2, 0.3, 0.4, 0.5, 0.7, and 1.0 ppm of copper ion. The influences of copper ion on the growth of the tadpoles were analyzed, and the results were summarized as follows: 1) The copper ion inhibited the growth of the tadpole. 2) The tadpoles were not survived for 20 days in the copper ion of 0.4~0.5ppm, and in the 0.7ppm, the tadpoles were not survived for 1 day after hatch. 3) The critical lethal concentration of Korean tadpole is regarded as 0.6ppm of copper ion. 4) The growth of head with and body length show a convexin increase pattern. 5) In the growth quantity of head width and body length, that of natural water shows the most rapid increase pattern, and that of the copper ion groups 0.1, 0.2, and 0.3ppm follows in that order. 6) The coefficient of relative growth($\alpha$) of control group is the greatest value, and that of the copper ion groups of 0.1, 0.2, and 0.3ppm follows in that order. The natural water shows the positive allometry, the contaminated groups shows the negative allometry in the relative growth of the contaminated groups to the natural water. 7) Body length shows positive allometry in the relative growth to head width.

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Study on vibration energy characteristics of vehicle-track-viaduct coupling system considering partial contact loss beneath track slab

  • Liu, Linya;Zuo, Zhiyuan;Zhou, Qinyue;Qin, Jialiang;Liu, Quanmin
    • Structural Engineering and Mechanics
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    • v.75 no.4
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    • pp.497-506
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    • 2020
  • CA mortar layer disengagement will give rise to the overall structural changes of the track and variation in the vibration form of the ballastless track. By establishing a vehicle-track-viaduct coupling analysis and calculation model, it is possible to analyze the CRTS-I type track structure vibration response while the track slab is disengaging with the power flow evaluation method, to compare the two disengaging types, namely partial contact loss at one edge beneath track slab and partial contact loss at midpoint beneath track slab. It can also study how the length of disengaging influences the track structures vibration power. It is showed that when the partial contact loss beneath track slab, and the relative vibration energy level between the rail and the track slab increases significantly within [10, 200]Hz with the same disengaging length, the partial contact loss at one edge beneath track slab has more prominent influence on the vibration power than the partial contact loss at midpoint beneath track slab. With the increase of disengaging length, the relative vibration energy level of the track slab grows sharply, but it will change significantly when it reaches 1.56 m. Little effect will be caused by the relative vibration energy level of the viaduct. The partial contact loss beneath the track slab will cause more power distribution and transmission between the trail and track slab, and will then affect the service life of the rail and track slab.

A new species of Parastenocaris from Korea, with a redescription of the closely related P. biwae from Japan (Copepoda: Harpacticoida: Parastenocarididae)

  • Karanovic, Tomislav;Lee, Wonchoel
    • Journal of Species Research
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    • v.1 no.1
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    • pp.4-34
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    • 2012
  • Parastenocaris koreana sp. nov. is described based on examination of numerous adult specimens of both sexes from several localities in Korea. Scanning electron micrographs are used to examine intra- and interpopulation variability of micro-characters, in addition to light microscopy. The new species is most closely related to the Japanese P. biwae Miura, 1969, which we redescribe based on newly collected material from the Lake Biwa drainage area. The two species differ in size, relative length of the caudal rami, shape of the anal operculum, shape of the genital double somite, relative length of the inner distal process on the female fifth leg, as well as relative length of the apical setae on the second, third, and fourth legs exopods in both sexes. Detailed examinations of three disjunct populations of P. koreana reveal also some geographical variation, especially in the surface ornamentation of somites, which may indicate some population structuring or even cryptic speciation. Lack of intraspecific variability in the number and position of sensilla on somites, as well as their potential phylogenetic significance, is a novel discovery. Both species examined here belong to the brevipes group, which we redefine to include 20 species from India (including Sri Lanka), Australia, East Asia, Northern Europe, and North America. A key to species of this group is also provided. In order to test the monophyly of the redefined brevipes group with highly disjunct distribution, as well as relationship between different species, a cladistics analysis is performed based on 39 morphological characters and with help of three outgroup taxa. Six equally parsimonious cladograms are generated, all of which show that the ingroup is well defined by at least three synapomorphies. Reconstructed phylogeny questions the previously suggested hypothesis about the origin of this group in South East Asia, with one Australian species showing the most basal position. We speculate that the present distribution of this group may be a combination of ancient vicariance and subsequent dispersal, with a possible origin in the Gondwanaland, in the rift valley between Australia and India.

Cytogenetic Analysis of Bagrid Catfish, Pseudobagrus fulvidraco(Teleostomi : Siluriformes) (동자개, Pseudobagrus fulvidraco(Teleostomi : Siluriformes)의 세포유전학적 연구)

  • Park, In-Seok;Lee, Chung-Lyul
    • Korean Journal of Ichthyology
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    • v.8 no.2
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    • pp.10-15
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    • 1996
  • The chromosome numbers of bagrid catfish, Pseudobagrus fulvidraco was 52, nine pairs (No. 1 to 9) were metacentrics with the range of relative length 2.89~6.22 and arm ratio 1.09~1.58 ; thirteen pairs (No. 10 to 22) were submetacentrics with the range of relative length 2.88~5.88 and arm ratio 1.80~3.65 ; and all other pairs (No. 23 to 26) were acrocentrics with the range of relative length 2.63~3.30 and arm ratio 9.01~10.67, and fundamental number was 104. Heteromorphic sex chromosomes were not found. There was not exist significant difference in resultant erythrocyte measurements and parameters between female and male (p<0.05). The mean sizes of cell and nucleus, were $11.03{\times}9.67{\mu}m$ and $4.18{\times}3.66{\mu}m$ respectively. The number of erythrocytes of both females and males were $6{\sim}7{\times}10^5/ml$. Gill tissues from diploid individuals had cells with one or two nucleoli.

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Comparison to Dielectric and Electrical Characteristics of Fatty Acid Organic Thin Film for Length of Alkyl Group (알킬기의 길이에 따른 지방산계 유기초박막의 유전 및 전기적 특성 비교)

  • 강기호;이준호;김도균;권영수;장정수
    • Proceedings of the Korean Institute of Electrical and Electronic Material Engineers Conference
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    • 1999.11a
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    • pp.343-346
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    • 1999
  • We have investigated the dielectric and electrical characteristics of palrnitic acid(PA), stearic acid(SA) and arachidic acid(AA) Langmuir-Blodgett(LB) films because these fatty acid systems have a same hydrophilic group and a different hydrophobic one(alky1 chain lqngth). The dielectric characteristics such as the capacitance-frequency(C-F) characteristics and the dielectric dispersion and absorption characteristics of PA, SA and AA through-plane were measured. In the result, the relative dielectric constants of PA, SA and AA LB films were about 3.0-4.6, 2.7-4.1 and 2.4-3.8, respectively. The relative dielectric constants were decreased in proportion to the chain length of alkyl group. Also, the dielectric dispersion and absorption of each fatty acid LB films have arisen from the dipole polarization in the range of $10^4~10^5[Hz]. And, the conductivity of PA, SA and AA LB films obtained from I-V characteristics were about $9{\times}10^{-14}, 3{\times}10^{-l4} and 5{\times}10^{-15}[S/cm], respectively. These results have shown the insulating materials and could control the conductivity by changing the length of alkyl group. Also, we have confirmed that the barrier height of fatty acid systems were about 1.32-1.40[eV] and the dielectric constant were about 3.0-4.2. These values were almost the same ones obtained from dielectric characteristics.

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Effects of Temperature, Relative Humidity, and Leaf Wetness Period on the Development of Rice Leaf Blast (잎도열병(稻熱病) 발생(發生)에 미치는 온도(溫度), 상대습도(相對濕度) 및 잎표면상(表面上)의 수분존재시간(水分存在時間)의 영향(影響))

  • Choi, W.J.;Park, E.W.;Lee, E.J.
    • Korean journal of applied entomology
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    • v.26 no.4 s.73
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    • pp.221-228
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    • 1987
  • The optimum temperature range for conidial germination of Pyriculacia oryzae on a slide glass was $26{\sim}30^{\circ}C$, at which at least four hours of leaf wetness period was required to germinate. Conidial germination was significantly reduced under dry conditions (relative humidity<85%) at $34^{\circ}C$ but not at lower temperature (18, 22, 26, $30^{\circ}C$). Number of lesions developed were greater at $26^{\circ}C$ than at other temperature tested. The average leaf wetness period required for production of a lesion per plant was 22 hours at $18^{\circ}C$, 16 hours at $22^{\circ}C$, 10 hours at $26^{\circ}C$, and 8 hours at $30^{\circ}C$. Less than one lesion per plant occurred at $34^{\circ}C$ even under 24 hours of leaf wetness period. The time period between inoculation and lesion appearance was $7{\sim}8$ days at $18^{\circ}C$, $4{\sim}5$ days at $22^{\circ}C$ and $26^{\circ}C$, and $3{\sim}4$ days at $30^{\circ}C$. The time period required for lesion appearance after inoculation was not affected by leaf wetness period and relative humidity. Lesion length increased most rapidly at $30^{\circ}C$ during the first four days after lesion appearance. Thereater, the rate of increase in lesion length was geratest at $26^{\circ}C$. The average increment of lesion length per day when relative humidity was greater than 90% was 0.7mm at $18^{\circ}C\;and\;22^{\circ}C$, 1mm at $26^{\circ}C$, and 0.8mm at $30^{\circ}C$. When relative humidity was less than 85%, the increments of lesion length per day were approximately $50{\sim}60%$ of those under humid conditions (relative humidity>90%) at all temperature regimes except $30^{\circ}C$. Relative humidity did not significantly affected lesion length at $30^{\circ}C$.

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A Study on the Quality Properties of the Expansive For Dry-Shrinkage Compensation of the Floor Mortar (온돌바닥 모르터의 건조수축보상을 위한 팽창제의 품질특성 연구)

  • 이웅종;이종열;정연식;이순기;정성철
    • Proceedings of the Korea Concrete Institute Conference
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    • 2000.10a
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    • pp.155-160
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    • 2000
  • In this paper, we investigated quality properties for the expansive of the CaO-$CaSO_4$ family which used to compensate dry-shrinkage in the floor mortar of On-Dol heating System. This experimental study established the mix condition with quantity of the expansive and is to investigate the relativity between the compress strength and the length change and the relativity between the chemical properties and the length change with the analysis of the physical and chemical properties. As a result of the study, the expansive is controlled by more the CaO than the $CaSO_4$. The relativity between the compress strength and the length change is expressed by exponential function, showing that if the expansive performance is increased, the compress strength is decreased. And the relativity between the chemical properties and the length change is only relative the quantity of the F-CaO among the chemical properties, is expressed by the second order function, showing that if the F-CaO is increased, the expansive performance is increased.

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