• 제목/요약/키워드: Real-Time polymerase chain reaction (PCR)

검색결과 456건 처리시간 0.026초

Green perilla leaf extract ameliorates long-term oxidative stress induced by a high-fat diet in aging mice

  • Edward, Olivet Chiamaka;Thomas, Shalom Sara;Cha, Kyung-Ok;Jung, Hyun-Ah;Han, Anna;Cha, Youn-Soo
    • Nutrition Research and Practice
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    • 제16권5호
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    • pp.549-564
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    • 2022
  • BACKGROUND/OBJECTIVES: Oxidative stress is caused by an imbalance between harmful free radicals and antioxidants. Long-term oxidative stress can lead to an "exhausted" status of antioxidant defense system triggering development of metabolic syndrome and chronic inflammation. Green perilla (Perilla frutescens) is commonly used in Asian cuisines and traditional medicine in southeast Asia. Green perilla possesses numerous beneficial effects including anti-inflammatory and antioxidant functions. To investigate the potentials of green perilla leaf extract (PE) on oxidative stress, we induced oxidative stress by high-fat diet (HFD) in aging mice. MATERIALS/METHODS: C57BL/6J male mice were fed HFD continuously for 53 weeks. Then, mice were divided into three groups for 12 weeks: a normal diet fed reference group (NDcon), high-fat diet fed group (HDcon), and high-fat diet PE treated group (HDPE, 400 mg/kg of body weight). Biochemical analyses of serum and liver tissues were performed to assess metabolic and inflammatory damage and oxidative status. Hepatic gene expression of oxidative stress and inflammation related enzymes were evaluated by quantitative real-time polymerase chain reaction (qRT-PCR). RESULTS: PE improved hepatopathology. PE also improved the lipid profiles and antioxidant enzymes, including hepatic glutathione peroxidase (GPx) and superoxide dismutase (SOD) and catalase (CAT) in serum and liver. Hepatic gene expressions of antioxidant and anti-inflammatory related enzymes, such as SOD-1, CAT, interleukin 4 (IL-4) and nuclear factor erythroid 2-related factor (Nrf2) were significantly enhanced by PE. PE also reduced the levels of hydrogen peroxide (H2O2) and malondialdehyde (MDA) in the serum and liver; moreover, PE suppressed hepatic gene expression involved in pro-inflammatory response; Cyclooxygenase-2 (COX-2), nitric oxide synthase (NOS), interleukin 1 beta (IL-1β), and interleukin 6 (IL-6). CONCLUSIONS: This research opens opportunities for further investigations of PE as a functional food and possible anti-aging agent due to its attenuative effects against oxidative stress, resulting from HFD and aging in the future.

p66Shc in sheep preimplantation embryos: Expression and regulation of oxidative stress through the manganese superoxide dismutase-reactive oxygen species metabolic pathway

  • Tong Zhang;Jiaxin Zhang;Ruilan Li
    • Animal Bioscience
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    • 제36권7호
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    • pp.1022-1033
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    • 2023
  • Objective: p66Shc, a 66 kDa protein isoform encoded by the proto-oncogene SHC, is an essential intracellular redox homeostasis regulatory enzyme that is involved in the regulation of cellular oxidative stress, apoptosis induction and the occurrence of multiple age-related diseases. This study investigated the expression profile and functional characteristics of p66Shc during preimplantation embryo development in sheep. Methods: The expression pattern of p66Shc during preimplantation embryo development in sheep at the mRNA and protein levels were studied by quantitative real-time polymerase chain reaction (RT-qPCR) and immunofluorescence staining. The effect of p66Shc knockdown on the developmental potential were evaluated by cleavage rate, morula rate and blastocyst rate. The effect of p66Shc deficiency on reactive oxygen species (ROS) production, DNA oxidative damage and the expression of antioxidant enzymes (e.g., catalase and manganese superoxide dismutase [MnSOD]) were also investigated by immunofluorescence staining. Results: Our results showed that p66Shc mRNA and protein were expressed in all stages of sheep early embryos and that p66Shc mRNA was significantly downregulated in the 4-to 8-cell stage (p<0.05) and significantly upregulated in the morula and blastocyst stages after embryonic genome activation (EGA) (p<0.05). Immunofluorescence staining showed that the p66Shc protein was mainly located in the peripheral region of the blastomere cytoplasm at different stages of preimplantation embryonic development. Notably, serine (Ser36)-phosphorylated p66Shc localized only in the cytoplasm during the 2- to 8-cell stage prior to EGA, while phosphorylated (Ser36) p66Shc localized not only in the cytoplasm but also predominantly in the nucleus after EGA. RNAi-mediated silencing of p66Shc via microinjection of p66Shc siRNA into sheep zygotes resulted in significant decreases in p66Shc mRNA and protein levels (p<0.05). Knockdown of p66Shc resulted in significant declines in the levels of intracellular ROS (p<0.05) and the DNA damage marker 8-hydroxy2'-deoxyguanosine (p<0.05), markedly increased MnSOD levels (p<0.05) and resulted in a tendency to develop to the morula stage. Conclusion: These results indicate that p66Shc is involved in the metabolic regulation of ROS production and DNA oxidative damage during sheep early embryonic development.

Alfalfa xenomiR-162 targets G protein subunit gamma 11 to regulate milk protein synthesis in bovine mammary epithelial cells

  • Guizhi Meng;Hongjuan Duan;Jingying Jia;Baobao Liu;Yun Ma;Xiaoyan Cai
    • Animal Bioscience
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    • 제37권3호
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    • pp.509-521
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    • 2024
  • Objective: It was shown that microRNAs (miRNAs) play an important role in milk protein synthesis. However, the post-transcriptional regulation of casein expression by exogenous miRNA (xeno-miRNAs) in ruminants remains unclear. This study explores the regulatory roles of alfalfa xeno-miR162 on casein synthesis in bovine mammary epithelial cells (bMECs). Methods: The effects of alfalfa xenomiR-162 and G protein subunit gamma 11 (GNG11) on proliferation and milk protein metabolism of bMECs were detected by 5-Ethynyl-2'-Deoxyuridine (EdU) staining, flow cytometry, cell counting kit-8 (CCK-8), enzyme-linked immunosorbent assay, quantitative real-time polymerase chain reaction (qRT-PCR), and Western blot. Dual-luciferase reporter assay was used to verify the targeting relationship between GNG11 and xenomiR-162. Results: Results showed that over-expression of xenomiR-162 inhibited cell proliferation but promoted apoptosis, which also up-regulated the expression of several casein coding genes, including CSN1S1, CSN1S2, and CSN3, while decreasing the expression of CSN2. Furthermore, the targeting relationship between GNG11 and xenomiR-162 was determined, and it was confirmed that GNG11 silencing also inhibited cell proliferation but promoted apoptosis and reduced the expression of casein coding genes and genes related to the mammalian target of rapamycin (mTOR) pathway. Conclusion: Alfalfa xenomiR-162 appears to regulate bMECs proliferation and milk protein synthesis via GNG11 in the mTOR pathway, suggesting that this xeno-miRNA could be harnessed to modulate CSN3 expression in dairy cows, and increase κ-casein contents in milk.

Identification and functional prediction of long non-coding RNAs related to oxidative stress in the jejunum of piglets

  • Jinbao Li;Jianmin Zhang;Xinlin Jin;Shiyin Li;Yingbin Du;Yongqing Zeng;Jin Wang;Wei Chen
    • Animal Bioscience
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    • 제37권2호
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    • pp.193-202
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    • 2024
  • Objective: Oxidative stress (OS) is a pathological process arising from the excessive production of free radicals in the body. It has the potential to alter animal gene expression and cause damage to the jejunum. However, there have been few reports of changes in the expression of long noncoding RNAs (lncRNAs) in the jejunum in piglets under OS. The purpose of this research was to examine how lncRNAs in piglet jejunum change under OS. Methods: The abdominal cavities of piglets were injected with diquat (DQ) to produce OS. Raw reads were downloaded from the SRA database. RNA-seq was utilized to study the expression of lncRNAs in piglets under OS. Additionally, six randomly selected lncRNAs were verified using quantitative real-time polymerase chain reaction (qRT-PCR) to examine the mechanism of oxidative damage. Results: A total of 79 lncRNAs were differentially expressed (DE) in the treatment group compared to the negative control group. The target genes of DE lncRNAs were enriched in gene ontology (GO) terms and Kyoto encyclopedia of genes and genomes (KEGG) signaling pathways. Chemical carcinogenesis-reactive oxygen species, the Foxo signaling pathway, colorectal cancer, and the AMPK signaling pathway were all linked to OS. Conclusion: Our results demonstrated that DQ-induced OS causes differential expression of lncRNAs, laying the groundwork for future research into the processes involved in the jejunum's response to OS.

Effect of Various Pathological Conditions on Nitric Oxide Level and L-Citrulline Uptake in Motor Neuron-Like (NSC-34) Cell Lines

  • Shashi Gautam;Sana Latif;Young-Sook Kang
    • Biomolecules & Therapeutics
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    • 제32권1호
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    • pp.154-161
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    • 2024
  • Amyotrophic lateral sclerosis (ALS) is a fatal motor neuron disorder that causes progressive paralysis. L-Citrulline is a nonessential neutral amino acid produced by L-arginine via nitric oxide synthase (NOS). According to previous studies, the pathogenesis of ALS entails glutamate toxicity, oxidative stress, protein misfolding, and neurofilament disruption. In addition, L-citrulline prevents neuronal cell death in brain ischemia; therefore, we investigated the change in the transport of L-citrulline under various pathological conditions in a cell line model of ALS. We examined the uptake of [14C]L-citrulline in wild-type (hSOD1wt/WT) and mutant NSC-34/ SOD1G93A (MT) cell lines. The cell viability was determined via MTT assay. A transport study was performed to determine the uptake of [14C]L-citrulline. Quantitative real-time polymerase chain reaction (qRT-PCR) analysis was performed to determine the expression levels of rat large neutral amino acid transported 1 (rLAT1) in ALS cell lines. Nitric oxide (NO) assay was performed using Griess reagent. L-Citrulline had a restorative effect on glutamate induced cell death, and increased [14C]L-citrulline uptake and mRNA levels of the large neutral amino acid transporter (LAT1) in the glutamate-treated ALS disease model (MT). NO levels increased significantly when MT cells were pretreated with glutamate for 24 h and restored by co-treatment with L-citrulline. Co-treatment of MT cells with L-arginine, an NO donor, increased NO levels. NSC-34 cells exposed to high glucose conditions showed a significant increase in [14C]L-citrulline uptake and LAT1 mRNA expression levels, which were restored to normal levels upon co-treatment with unlabeled L-citrulline. In contrast, exposure of the MT cell line to tumor necrosis factor alpha, lipopolysaccharides, and hypertonic condition decreased the uptake significantly which was restored to the normal level by co-treating with unlabeled L-citrulline. L-Citrulline can restore NO levels and cellular uptake in ALS-affected cells with glutamate cytotoxicity, pro-inflammatory cytokines, or other pathological states, suggesting that L-citrulline supplementation in ALS may play a key role in providing neuroprotection.

울산지역 하수기반역학을 이용한 코로나19 감시 연구 (COVID-19 Surveillance using Wastewater-based Epidemiology in Ulsan)

  • 김경남;최재선;이연수;김대교;박준영;김영민;최영선
    • 한국식품위생안전성학회지
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    • 제39권3호
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    • pp.260-265
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    • 2024
  • 하수기반역학을 이용한 코로나19 감시 결과, 연구기간(2022년 8월-2023년 8월)동안 울산지역 4곳 하수처리장의 전체 174건 모든 시료에서 코로나바이러스-19가 검출되었다. 확진자 수와 하수 내 코로나바이러스 농도와의 상관분석 결과, 높은 상관성이 나타났으며 특히 하수감시가 임상감시보다 2-3주 앞서 농도가 증가함으로써 조기 인지의 가능성도 볼 수 있었다. 또한 코로나19 변이 분석 결과 역시 유행 시기별 우세종화된 변이와 비교적 유사하여 변이 예측도 가능하였다. 하수감시가 전국적, 전세계적으로 적용되고 있으며 많은 연구가 국가적 사업으로 진행되고 있다. 이에 따라, 하수 분석방법 및 분석기기 발전 등의 지속적 연구 업데이트가 필요하다. 또한 코로나19를 통해 감염병의 선제적 모니터링 및 유행 예측의 가능성을 확인하였으므로 다양한 병원체 및 식품·의약품 등에 확대 적용이 진행 중이다. 따라서 본 연구는 감염병 검출분야에서 더 나아가 하수 내 식품 성분, 활성물질 및 미생물 등의 분석을 통해 지역사회의 식품안전 및 전반적인 위생환경 감시를 위해 활용될 수 있을 것으로 기대된다.

Diagnosis and Monitoring of Chronic Myeloid Leukemia: Chiang Mai University Experience

  • Tantiworawit, Adisak;Kongjarern, Supanat;Rattarittamrong, Ekarat;Lekawanvijit, Suree;Bumroongkit, Kanokkan;Boonma, Nonglak;Rattanathammethee, Thanawat;Hantrakool, Sasinee;Chai-Adisaksopha, Chatree;Norasetthada, Lalita
    • Asian Pacific Journal of Cancer Prevention
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    • 제17권4호
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    • pp.2159-2164
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    • 2016
  • Background: A diagnosis of chronic myeloid leukemia (CML) is made on discovery of the presence of a Philadelphia (Ph) chromosome. The success of the treatment of this form of leukemia with tyrosine kinase inhibitor (TKI) is monitored by reduction of the Ph chromosome. Objective: To compare the role of conventional cytogenetic (CC) methods with a real time quantitative polymerase chain reaction (RQ-PCR) and fluorescence in situ hybridization (FISH) for diagnosis and treatment monitoring of CML patients. The secondary outcome was to analyze the treatment responses to TKI in CML patients. Materials and Methods: This was a retrospective study of CML patients who attended the Hematology clinic at Chiang Mai University Hospital from 2005-2010. Medical records were reviewed for demographic data, risk score, treatment response and the results of CC methods, FISH and RQ-PCR. Results: One hundred and twenty three cases were included in the study, 57.7% of whom were male with a mean age of 46.9 years. Most of the patients registered as intermediate to high risk on the Sokal score. At diagnosis, 121 patients were tested using the CC method and 118 (95.9%) were identified as positive. Five patients failed to be diagnosed by CC methods but were positive for BCR-ABL1 using the FISH method. Imatinib was the first-line treatment used in 120 patients (97.6%). In most patients (108 out of 122, 88.5%), a complete cytogenetic response (CCyR) was achieved after TKI therapy and in 86 patients (70.5%) CCyR was achieved long term by the CC method. Five out of the 35 analyzed patients in which CCyR was achieved by the CC method had a positive FISH result. Out of the 76 patients in which CCyR was achieved, RQ-PCR classified patients to only CCyR in 17 patients (22.4%) with a deeper major molecular response (MMR) in 4 patients (5.3%) and complete molecular response (CMR) in 55 patients (72.4%). In the case of initial therapy, CCyR was achieved in 95 patients (79.1%) who received imatinib and in both patients who received dasatinib (100%). For the second line treatment, nilotinib were used in 30 patients and in 19 of them (63.3%) CCyR was achieved. In half of the 6 patients (50%) who received dasatinib as second line or third line treatment CCyR was also achieved. Conclusions: CML patients had a good response to TKI treatment. FISH could be useful for diagnosis in cases where CC analysis failed to detect the Ph chromosome. RQ-PCR was helpful in detecting any residual disease and determining the depth of the treatment response at levels greater than the CC methods.

소아에서 13종 호흡기 바이러스에 의한 급성 하기도 감염의 임상 양상 (Clinical characteristics of acute lower respiratory tract infections due to 13 respiratory viruses detected by multiplex PCR in children)

  • 임정숙;우성일;백윤희;권혁일;최영기;한윤수
    • Clinical and Experimental Pediatrics
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    • 제53권3호
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    • pp.373-379
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    • 2010
  • 목 적 : 급성 하기도 감염으로 입원하는 소아에서 최근 알려진 hRV C 및 hBoV를 포함하여 13종 호흡기 바이러스의 임상 양상 및 역학을 알아보고자 하였다. 방 법 : 2008년 5월부터 2009년 4월까지 충북대학교병원 소아과에 급성 하기도 감염으로 입원한 소아 중 325명을 대상으로 비인두 흡인물에서 multiplex RT-PCR법을 이용하여 총 13종의 바이러스를 검출하였으며, 대상 소아의 의무기록을 검토하였다. 결 과 : 대상 소아 중 270례(83.1%)에서 호흡기 바이러스가 검출되었으며, 혼합 감염은 71례(26.3%)에서 관찰되었다. 바이러스 검출 빈도는 RSV 108례(33.2%), hRV 62례(19.1%), Flu A 55례(16.9%), hMPV 50례(15.4%), PIV 27례(8.3%), hBoV 26례(8.0%), ADV 19례(5.8%), hCoV 7례(2.2%)였다. 임상진단은 세기관지염 37.5%, 폐렴 34.5%, 급성 천식 악화 20.9%, 크룹 7.1%이었으며, 세기관지염과 폐렴으로 진단된 소아에서 가장 높은 빈도로 검출된 호흡기 바이러스는 RSV, hRV, hMPV, Flu A였다. Flu A와 hRV는 3세 이상의 천식 악화로 진단된 소아에서 가장 높은 빈도로 검출되었다. hRV A와 hRV C는 각각 48명(14.8%)와 14명(4.3%)에서 검출되었으며, hRV C가 검출된 소아의 평균 연령은 $4.1{\pm}3.5$세로 hRV A가 검출된 소아에서의 $1.7{\pm}2.3$세에 비해 유의하게 높았다(P =0.009). hBoV는 세기관지염 또는 폐렴으로 진단된 소아에서 주로 검출되었고, 이들의 평균 연령은 $2.3{\pm}3.4$세였다. 결 론 : 본 연구에서는 한국 소아에서 13종의 바이러스에 의한 하기도 감염의 양상을 관찰하였다. 소아 하기도 감염에서 새로 알려진 바이러스들의 역할을 명확히 알기 위해서는 향후 지속적인 연구가 필요하다.

Prevotella nigrescens lipopolysaccharides로 자극된 MG63 세포에서 분비되는 기질금속단백질 MMP-1과 TIMP-1의 수준에 관한 연구 (MMP-1 and TIMP-1 production in MG-63 cells stimulated with Prevotella nigrescens Lipopolysaccharide)

  • 양원경;김미리;손원준;이인복;조병훈;엄정문;손호현
    • Restorative Dentistry and Endodontics
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    • 제29권5호
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    • pp.470-478
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    • 2004
  • 본 연구의 목적은 Prevotella nigrescens lipopolysaccharides (LPS)로 자극된 MG63 osteosarcoma 세포에서 생성, 분비되는 기질금속단백효소인 MMP-1과 그 억제제인 TIMP-1을 측정할 뿐아니라 수산화칼슘으로 처리한 P. nigrescens LPS에 의한 기질금속단백효소와 그 억제제의 분비수준의 변화를 알아보는데 있다. 혐기성 조건에서 배양한 P. nigrescens로부터 LPS를 추출하여 순수정제한 다음 0, 1 그리고 $10{\;}\mu\textrm{g}/ml$의 LPS 농도로 MG63 세포를 자극하거나 또는 수산화칼슘으로 처리한 $10{\;}\mu\textrm{g}/ml$의 LPS로 세포를 다양한 자극하여 다양한 시간이 경과한 다음 세포로부터 분비되는 MMP-1과 TIMP-1의 RNA 수준을 real time-PCR 방법으로 측정하였다. 실험결과 MMP-1의 mRNA수준은 48시간에서 최고에 달하였고 그 분비정도는 LPS의 농도에 비례하였다. TIMP-1 mRNA는 $1{\;}\mu\textrm{g}/ml$의 세균성 LPS 자극시 24시간 및 48시간에서 높은 증가를 보였으나 고농도인 $10{\;}\mu\textrm{g}/ml$의 LPS로 자극한 경우 오히려 그 발현이 억제되었다. 또한 수산화칼슘으로 전처리한 P. nigrescens LPS로 자극한 MG 63 세포에서는 MMP-1과 TIMP-1의 분비가 억제되었다. 이러한 결과를 통해 볼 때 P. nigrescens LPS에 의한 MMP-1과 TIMP-1의 발현조절이 치근단 질환에서 발생하는 치조골 흡수 기전중 하나로 사료된다. 뿐만 아니라 P. nigrescens에 의해 분비되는 기질금속단백효소를 매개로 하는 염증반응 감소에 수산화칼슘이 효과적으로 작용하는것으로 확인되어 치근단 질환에 관여하는 세균성 LPS를 제거하기 위해 임상적으로 사용되는 근거가 될 수 있다.

국내 서식 미국바퀴(Periplaneta americana L.)의 특성 및 추출물의 항산화·항균 효과 (Effect of antioxidation and antibacterial activity on crude extract and Characterization of American Cockroaches (Periplaneta americana L.) in Korea)

  • 김정은;김선곤;강성주;김춘성;최용수
    • 한국잠사곤충학회지
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    • 제53권2호
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    • pp.135-142
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    • 2015
  • 본 연구는 미국바퀴(Periplaneta americana)의 식의약용 소재로의 활용을 위하여 미국바퀴의 사육 특성을 조사하여 사육의 편의를 제공하고, 유용물질의 분리 및 분석을 통하여 식의약용 소재로의 가능성을 제시하고자 하였으며, 그 결과로 미국바퀴는 한 개의 난포가 평균 25개의 알을 포란하고 있고, 14.5개의 알이 부화하여 약 67%의 부화율을 보였으며, $28^{\circ}C$에서 사육하는 것이 가장 효율적인 사육온도로 확인하였다. 미국바퀴(P. americana) 성충의 일반성분 및 유용성분 분석 결과, 일반성분 중 수분이 60% 이상을 차지하고 있으며, 조지방이 1%, 조단백질은 33.49 %로써 조단백질 함량이 높게 측정되었다. 필수아미노산이 2.37%를 차지하고 있으며, 지방산은 항암작용을 가지고 있는 oleic acid (C18 : 1n9c)가 28.91%, palmitic acid(C16 : 0)가 19.06%로 가장 많은 량을 차지하고 있어 미국바퀴의 식용화 가능성을 확인하였다. 미국바퀴(P. americana)는 성충을 멸균증류수(DW) 및 각종 유기용매(ethyl acetate, hexan, ethyl ether, EtOH, MeOH))로 추출하여 각각의 조추출물이 가지고 있는 항균 활성을 측정하기 위하여 그램 음성균인 P. aeruginosa, E. coli와 그램 양성균인 B. subtilis, S. auricularis와 진균인 C. abbicans을 대상으로 실시한 disc diffusion test의 결과, ethyl ether를 이용하여 추출한 조추출물이 시험에 사용된 각각의 공시균주에 대하여 B. subtilis $1.88{\pm}0.40mm$, S. auricularis $7.78{\pm}0.76mm$, P. aeruginosa $6.44{\pm}1.03mm$, E. coli $7.55{\pm}0.74mm$, C. abbicans $5.61{\pm}0.57mm$의 clear zone을 형성하면서 각각의 균주 생장을 저해하는 것을 확인하였으며, 온도 스트레스에 대한 항산화 물질인 GST 발현량을 Real Time PCR을 이용하여 정량분석 한 결과, 항산화 단백질인 GST는 $37^{\circ}C$에서 한 시간 단위로 점차 발현량이 증가하고, $4^{\circ}C$ 처리를 한 경우에는 1시간 경과 후 급격하게 증가하였으며, 2시간 경과한 후에 가장 많은 발현량을 보였다. 본 연구결과에 따라서, 미국바퀴(P. americana)는 각종 유용성분을 함유하고 있으며, 항균 활성도 우수한 것으로 확인하였고, 온도처리와 같은 사육조건 조절시 고품질의 원료생산을 통한 농가소득 증대에 기여할 수 있을 것으로 기대한다.