• Title/Summary/Keyword: Psoroma species

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Draft genome sequence of Caballeronia sordidicola strain PAMC 26633 isolated from an antarctic lichen, Psoroma species (남극 지의류 Psoroma 종에서 분리한 Caballeronia sordidicola 균주 PAMC 26633의 초벌 유전체 서열 분석)

  • Kim, Junghee;Hong, Soon Gyu;Oh, Hyun-Myung
    • Korean Journal of Microbiology
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    • v.53 no.4
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    • pp.337-339
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    • 2017
  • Here we report the draft genome sequence of the Caballeronia sordidicola strain PAMC 26633, isolated from Psoroma species, a lichen material from Barton Peninsula, King George Island in Antarctica. As we have observed in previous genomic studies in the genus Caballeronia from polar lichen, draft genomic sequences of PAMC 26633 had an assortment of genes of ecological importance and of biotechnical potentials, which include diverse metabolic genes for carbohydrates, amino acids, and genes for nitrogen/sulfur metabolisms, stress responses, membrane transporters, antibiotic resistance, and heavy metal resistance. CRISPR genes and sequences were not found and there were some phage remnants and transposons.

Genome sequence of Caballeronia sordidicola strain PAMC 26510 isolated from Psoroma sp., an Antarctic lichen (남극 지의류에서 분리한 Caballeronia sordidicola균주 PAMC 26510의 유전체 서열 분석)

  • Yang, Jhung Ahn;Hong, Soon Gyu;Oh, Hyun-Myung
    • Korean Journal of Microbiology
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    • v.53 no.2
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    • pp.137-140
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    • 2017
  • Caballeronia sordidicola strain PAMC 26510 was isolated from Psoroma sp., a lichen material, collected from Barton Peninsula of King George Island in Antarctica. The draft genome sequence of PAMC 26510 consisted of 224 contigs and they was 7,872,143 base pairs with 59.7% G+C content. The genome included 7,580 protein coding sequences and 6 ribosomal RNA genes and 46 tRNA genes. The strain PAMC 26510 is also a metabolic generalist as we have observed in previous genomic studies in the arctic strain of Caballeronia sordidicola. The draft genomic sequences of PAMC 26510 had six CRISPR arrays on six contigs, and there were two clusters of CRISPR-associated genes that were linked with respective CRISPR arrays.