• 미생물학회지
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• 제30권6호
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• pp.444-449
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• 1992

낙동강 하구생태계에 분포한 종속영양세균의 환경 변화에 따른 군집구조의 변화를 파악하기 위해 총 858 균주를 분리하여 수리학적 방법에 의해 분석하였다. 종의 다양성(H') 은 1.54-3.49 로, 하구언 건설 전의 수치와 큰 차이가 없었으나, 균등성지수(evenness index)(J') 는 0.31-0.80 으로 감소하였다. Physiological tolerance index 중 수온에 대한 지수(P') 는 수심이 얕은 정점에서, pH 와 염분에 대한 $P_{h}$ 및 $P_{s}$ 는 담수와 해수가 교차하는 정점에서 높았다. 우점의 cluster 를 속 (genus) 수준에서 동정한 결과 Aeromonas, Vibrio, Pseudomonas, Acinetobacter-Morexella, Alcaligenes, Flavobacterium, Micrococcaceae, Enterobacteriaceae 등으로 분류되어 하구언 축조 전과 동일한 종류의 세균뷴포를 나타냈으나 그 출현비율은 달랐다. 이와 같은 결과로 미루어 하구언 축조 등에 따른 낙동강 하구역의 환경변화는 분포세균의 종류보다는 생리적 특셩에 영양을 미쳐 특정종의 우점을 나타나게 한 것으로 사료된다.

• 환경위생공학
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• 제3권1호
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• pp.19-26
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• 1988

활동성이 강한 중학생을 대상으로 남$\cdot$여, 학생에 따른 세균 오염현황을 파악함으로써 중학생의 보건 교육에 관심을 높이고자 하여 1985년 2월 4일부터 2월 15일까지 서울 시내 중학교에 재학중인 학생 29명을 대상으로 양손으로 부터의 세균을 분리하여 다음과 같은 결과를 얻었다. 1. 손에 오염된 평균 세균수는 1학년 남학생 $3.08\times10^4$개 여학생$2.48\times10^4$개, 2학년 남학생 $3.32\times10^4$, 여학생 $1.64\times10^4$개로 2학년 여학생에 있어 특히 적은 수가 나타남을 알 수 있었다. 2. 중학생 손에서 검출된 세균의 속명은 Staphylococcus, Streptococcus, Micrococcus, Bacillus, Neisseria spp., Branhamella, Acinetobacter, Moraxella, Chromobacterim, Alcaligenes, Flavobacterium, Pseudomonas, Actinobacillus, Pasteurella, Vibrio, Enterobacteria와 Plesiomonas로 17속으로 나타났다. 3. 속명이 밝혀진 균주 중 종명까지 밝혀진 것은 Staphylococcus aureus, Staphylococcus epidemidis, Micrococcus varians, Branhamella catarrhalis, Acinetobacter anitratus, Moraxella bovis, Moraxella urethralis, Pseudomonas aeruginosa와 plesiomonas shigelloid로 9종이 밝혀졌다. 4. Genus 중 전체 학생중 나타난 출현 빈도가 가장 높은 것은 Staphylococcus $(96.6\%)$이었고 그 다음 Enterobacterial $(14.4\%)$ Bacillus$(20.7\%)$, Branhamella$(17.2\%)$순으로 나타났다.

• Journal of Microbiology
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• 제33권3호
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• pp.208-214
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• 1995

The effects of various 2, 4-D-degradative plasmids on the axenic growth patterns, the degradation phenotypes, and the competitiveness of different host bacteria were evaluated in liquid cultures; the organisms and plasmids used were Alcaligenes eutrophus JMP134/pJP4, Alcaligenes paradoxus/p2811, Pseudomonas pickettii/p712, pJP4, and p712 or p 2811 exhibited very different restriction fragment profiles in restriction endonuclease digests. These plasmids were transferred to the recipients (P. cepacia and Alcaligenes JMP228) at relatively high frequencies ranging from 8.9 $\times$ 10$^3$ to 1.6 $\times$ 10$^5$ per donar cell. In the axenic liquid cultures the fast-growing strains, such as P. pseudomallei/p745 and P. cepacia/pJP4, exhibited short lag periods, high specific growth rates, and high relative fitness coefficients, while the slow-growing strains, such as P. pickettii/p712 and A. paradoxus/p2811, had long lag periods, low specific growth rates, and low relative fitness coefficients. Depending on the type of plasmid containing the genes for the 2, 4-D pathway, some transconjugants exhibited intermediate grwoth patterns between the fast-growing strains and the slow-growing strains. The plasmid and plasmid-host interactions determined specific growth rate and lag time, respectively, which were shown to be principal determinants of competitiveness among the strains, but relative fitness coefficient derived from the axenic culture was not always predictive for the mixed culture condition.

• 한국토양비료학회지
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• 제33권4호
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• pp.261-265
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• 2000

공해 문제를 유발하고 있는 Pentachlorophenol(PCP)와 2,4-dichlorophenoxyacetate(2,4-D)와 같은 난분해성의 염소계 방향족 화합물들을 폭 넓고 빨리 분해할 수 있는 우수 균주를 개발하기 위한 기초 연구로서, 대전, 청주, 전주 근교 지역에서 채취한 토양 표품으로부터 100균주의 세균을 분리하였다. 그 중 PCP를 단일 탄소와 에너지원으로 하는 고체 최소 배지에서 잘 자라는 균주 19균주를 선별하였다. 이들 균주를 동정한 결과 Pseudomonas속이 15균주, Acinetobacter속이 1균주, 3균주는 미동정되어 Pseudomonas속이 대부분을 차지하였다. 분해능이 비교적 좋은 것으로 알려진 Alcaligenes의 세균은 발견되지 않았다. Pseudomonas속으로 밝혀진 MU135, MU139, MU163과 MU184 네가지 염소계 화합물들(PCP, 2,4,-D, MCPA 그리고 3CB)을 모두 분해하는 것으로 나타났다. 최소 액체배지에서 배양한 경우 Pseudomonas sp. MU139 균주가 접종 72시간 후에 가장 높은 분해도를 나타내었고, Pseudomonas sp. Mu147, MU177, MU184 그리고 MU192는 그 다음으로 높은 분해도를 나타냈다. 실험결과 선별된 19 균주 중 Pseudomonas sp. Mu139와 Pseudomonas sp. MU184는 염소계 방향족 화합물에 대한 넓은 분해능을 갖고 있으며, 특히 PCP에 대한 높은 분해도를 나타내는 것으로 조사되어 우수 균주 개발의 좋은 재료로 이용될 수 있을 것으로 보인다.

• 생명과학회지
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• 제17권9호통권89호
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• pp.1284-1289
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• 2007

정수처리 공정에서 생물활성탄 (BAC) 공정은 미생물의 유기물 제거능을 극대화시킨 일종의 생물여과 공정이다 BAC 공정은 유기물과 미생물 재성장능을 효과적으로 제거한다. BAC 공정은 그 수계에 존재하는 미생물들이 활성탄에 부착 ${\cdot}$ 서식하며 수중의 천연유기물질을 기질로 이용하기 때문에 그 수계에 서식하는 미생물 종들에 매우 의존적이다. 본 연구는 낙동강 하류의 배리취수장 원수를 사용하여 생물활성탄에 의한 pilot-plant 공정을 운전하면서 SAC 공정에서의 활성탄 재질별로 배양작 (평판배양법) 및 비배양적 방법 (FISH)을 이용하여 SAC 부착세균의 군집구조 특성을 조사하였다. 실험결과 석탄계 재질의 부착세균 HPC 및 생산력이 각각 $1.20{\times}l0^7{\sim}56.2{\times}l0^7$ CFU/g, $1.2{\sim}3.7\;mg-C/m^3{\cdot}h$ 의 범위를 보여 세균 생체량과 DOC 제거율은 석탄계 재질이 가장 높은 것으로 나타났다. 배양적 방법으로 활성탄 재질별 부착세균을 동정한 결과 Pseudomonas 속이 우접하였고, 그 다음으로 Flavobacterium 속, Alcaligenes 속, Acinetobacter 속, Sphingomonas 속 등의 순으로 동정되었다. 또한, Pseudomonas 속 중 석탄계와 야자계 BAC에서는 Pseudomonas vesicularis, 목탄계 BAC에서는 Pseudomonas cepacia가 우점종으로 분포하였다. 비배양적 방법인 FISH 법을 이용한 세균 군집구조 조사결과 활성탄 재질별로 ${\alpha}$군집 27.0 ${\sim}$ 43.0%, ${\gamma}$ 군집 11.3 ${\sim}$ 28.6%, ${\beta}$ 군집 7.1 ${\sim}$ 22.0% 비율로 나타나 유기물 제거효율은 주로 ${\alpha}$ 군집에 의해 조절되어짐을 알 수 있었다.

• 한국미생물·생명공학회지
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• 제23권4호
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• pp.492-498
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• 1995

Net type polyvinylidene chloride (PVDC) media and cillium type polyethlene polypropylene (PEPP) media were installed in the aereted submerged biofilm reactors. Synthetic phenol wastewater for feed were made to contain 1,480 mg of phenol per liter of water. The organic loading range of reactors were 0.439-0.456 kg COD/m$_{3}$, 0.882 - 0.919 kg COD/m$_{3}$ and 1.199-1.339 kg COD/m$_{3}$. Comparing PVDC to PEPP media, the bacterial number found in biofilm on PEPP were slightly higher. With the low temperature (10$\circ$C), the number of bacteria was some what deceered. Number of bacterial strains identified from PVDC were 23 and those from PEPP were 42. Genera identified in the PVDC media were Flavobacterium (47.8%), Unidentified (17.6%), Pseudomonas (13.0%), Micrococcus (8.7%) and Beggratoa (8.7%). Genera identified in the PEPP media reactor were Pseudomonas (35.7%), Alcaligenes (19.0%), Aeromonas (14.33%) and Micrococcus (11.9%), In the steady, state, a filamentous bacteria, type 1701 was identified in all of the reactors. Paramecium sp. and fungi were present in the PVDC media reactor. While, Difflugia sp, Paramecium sp. and fungi were found in the PEPP media reactor. The low diversity of protozoa was ascribed to high concentration of phenol.

• Journal of Microbiology and Biotechnology
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• 제11권4호
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• pp.668-676
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• 2001

Pseudomonas sp. strain SY5 is a PCB-degrading bacterium [24] that includes two different enzymes (BphC1 and BphC2) encoding 2,3-dihdroxybiphenyl 1,2-dioxygenase and BphD encoding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. The bphC1 and bphC2 genes were found to consist of 897 based encoding 299 amino acids and 882 bases encoding 294 amino acids, respectively, whereas the bphD gene consisted of 861 bases encoding 287 amino acids. According to a homology search, a 50% and 39% similarity between the bphC1 and bphC2 genes at the nucleotide and amino acid level was shown, respectively. The bphC1 gene showed a 38% and 45% similarity at the amino acid level to Alcaligenes eutrophus A5 and Rhodococcus rhodochrous, respectively, whereas, bphC2 showed a 95% and 43% similarity, respectively. A comparison of the deduced amino acid sequence of the bphD product of Pseudomonas sp. SY5 with that of A. eutrophus A5, Pseudomons sp. KKS102, and LB400 showed a sequence identity of 92, 92, and 79%, respectively. Strain SY5 was originally isolated from municipal sewage containing recalcitrant organic compounds an found to have a high degradability of various aromatic compounds [23]. The current study found that strain SY5 had two extradiol-type dioxygenases, which did not hybridize with each other as they had a low similarity, yet a similar structure of evolutionarily conserved amino acids residues for catalytic activity between BphC1 and BphC2 was observed.

• Journal of Microbiology and Biotechnology
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• 제12권5호
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• pp.729-734
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• 2002

Radiorespirometric analysis revealed that Pseudomonas sp. strain KKI isolated from a soil contaminated with petroleum hydrocarbons was able to catabolize polycyclic aromatic hydrocarbons such as phenanthrene and naphthalene. The rate and extent of phenanthrene mineralization was markedly enhanced when the cells were pregrown on either naphthalene or phenanthrene, compared to the cells grown on universal carbon sources (i.e., TSA medium). Deduced amino acid sequence of the Rieske-type iron-sulfur center of a putative phenanthrene dioxygenase (PhnAl) obtained from the strain KKI shared significant homology with DxnAl (dioxin dioxygenase) from Spingomonas sp. RW1, BphA1b (biphenyl dioxygenase) from Spingomonas aromaticivorans F199, and PhnAc (phenanthrene diokygenase) from Burkholderia sp. RP007 or Alcaligenes faecalis AFK2. Northern hybridization using the dioxygenase gene fragment cloned from KKI showed that the expression of the putative phn dioxygenase gene reached the highest level in cells grown in the minimal medium containing phenanthrene and $KNO_3$, and the expression of the phn gene was repressed in cells grown with glucose. In addition to the metabolic change, phospholipid ester-linked fatty acids (PLFA) analysis revealed that the total cellular fatty acid composition of KKI was significantly changed in response to phenanthrene. Fatty acids such as 14:0, 16:0 3OH, 17:0 cyclo, 18:1$\omega$7c, 19:0 cyclo increased in phenanthrene-exposed cells, while fatty acids such as 10:0 3OH, 12:0, 12:0 2OH, 12:0 3OH, 16:1$\omega$7c, 15:0 iso 2OH, 16:0, 18:1$\omega$6c, 18:0 decreased.

• Journal of Microbiology
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• 제43권6호
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• pp.572-576
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• 2005

This study focused on detecting catabolic genes for polycyclic aromatic hydrocarbons (PAHs) distributed in the reed rhizosphere of Sunchon Bay, Korea. These marsh and mud environments were severely affected by human activities, including agriculture and fisheries. Our previous study on microbial roles in natural decontamination displayed the possibility that PAH-degrading bacteria, such as Achromobacter sp., Alcaligenes sp., Burkholderia sp. and Pseudomonas sp. play an important decontamination role in a reed rhizosphere. In order to gain further fundamental knowledge on the natural decontamination process, catabolic genes for PAH metabolism were investigated through PCR amplification of dioxygenase genes using soil genomic DNA and sequencing. Comparative analysis of predicted amino acid sequences from 50 randomly selected dioxygenase clones capable of hydroxylating inactivated aromatic nuclei indicated that these were divided into three groups, two of which might be originated from PAH-degrading bacteria. Amino acid sequences of each dioxygenase clone were a part of the genes encoding enzymes for initial catabolism of naphthalene, phenanthrene, or pyrene that might be originated from bacteria in the reed rhizosphere of Sunchon Bay.

• Journal of Microbiology
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• 제33권4호
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• pp.273-277
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• 1995

Although trout farming is well established in Korea, very little information is available on the composition of intestinal microflora in rainbow trout (Salmo gairdnerii). In 1994, from October through November, we investigated the composition and succession of intestinal bacteria. As fish grew, total viable counts increased dramatically until 45 days after fertilization when anaerobes started to appear on the media. After this time, they increased steadily. Ten aerobic generic were identified and Gram negative bacteria constituted 85% of total isolates. Among these, Pseudomonas, Eikenella, and Alcaligenes were the three major genera. Six anaerobic genera were isolated and identified. The ratio of anaerobes to aerobes was about 1 : 1 in adult trout and the composition of genera was changed under different conditions.