• Title/Summary/Keyword: Polyporaceae

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Draft Genome Sequence of the Reference Strain of the Korean Medicinal Mushroom Wolfiporia cocos KMCC03342

  • Bogun Kim;Byoungnam Min;Jae-Gu Han;Hongjae Park;Seungwoo Baek;Subin Jeong;In-Geol Choi
    • Mycobiology
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    • v.50 no.4
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    • pp.254-257
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    • 2022
  • Wolfiporia cocos is a wood-decay brown rot fungus belonging to the family Polyporaceae. While the fungus grows, the sclerotium body of the strain, dubbed Bokryeong in Korean, is formed around the roots of conifer trees. The dried sclerotium has been widely used as a key component of many medicinal recipes in East Asia. Wolfiporia cocos strain KMCC03342 is the reference strain registered and maintained by the Korea Seed and Variety Service for commercial uses. Here, we present the first draft genome sequence of W. cocos KMCC03342 using a hybrid assembly technique combining both short- and long-read sequences. The genome has a total length of 55.5 Mb comprised of 343 contigs with N50 of 332 kb and 95.8% BUSCO completeness. The GC ratio was 52.2%. We predicted 14,296 protein-coding gene models based on ab initio gene prediction and evidence-based annotation procedure using RNAseq data. The annotated genome was predicted to have 19 terpene biosynthesis gene clusters, which was the same number as the previously sequenced W. cocos strain MD-104 genome but higher than Chinese W. cocos strains. The genome sequence and the predicted gene clusters allow us to study biosynthetic pathways for the active ingredients of W. cocos.

Inhibition of Osteoclast Differentiation and Promotion of Osteogenic Formation by Wolfiporia extensa Mycelium

  • Tae Hyun Son;Shin-Hye Kim;Hye-Lim Shin;Dongsoo Kim;Jin-Sung Huh;Rhim Ryoo;Yongseok Choi;Sik-Won Choi
    • Journal of Microbiology and Biotechnology
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    • v.33 no.9
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    • pp.1197-1205
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    • 2023
  • Osteoporosis, Greek for "porous bone," is a bone disease characterized by a decrease in bone strength, microarchitectural changes in the bone tissues, and an increased risk of fracture. An imbalance of bone resorption and bone formation may lead to chronic metabolic diseases such as osteoporosis. Wolfiporia extensa, known as "Bokryung" in Korea, is a fungus belonging to the family Polyporaceae and has been used as a therapeutic food against various diseases. Medicinal mushrooms, mycelium and fungi, possess approximately 130 medicinal functions, including antitumor, immunomodulating, antibacterial, hepatoprotective, and antidiabetic effects, and are therefore used to improve human health. In this study, we used osteoclast and osteoblast cell cultures treated with Wolfiporia extensa mycelium water extract (WEMWE) and investigated the effect of the fungus on bone homeostasis. Subsequently, we assessed its capacity to modulate both osteoblast and osteoclast differentiation by performing osteogenic and anti-osteoclastogenic activity assays. We observed that WEMWE increased BMP-2-stimulated osteogenesis by inducing Smad-Runx2 signal pathway axis. In addition, we found that WEMWE decreased RANKL-induced osteoclastogenesis by blocking c-Fos/NFATc1 via the inhibition of ERK and JNK phosphorylation. Our results show that WEMWE can prevent and treat bone metabolic diseases, including osteoporosis, by a biphasic activity that sustains bone homeostasis. Therefore, we suggest that WEMWE can be used as a preventive and therapeutic drug.

Relationship between Higher Fungi Distribution and Climatic Factors in Naejangsan National Park (내장산국립공원의 고등균류 발생과 기후환경 요인과의 관계)

  • Jang, Seog-Ki;Kim, Sang-Wook
    • The Korean Journal of Mycology
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    • v.40 no.1
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    • pp.19-38
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    • 2012
  • This study was conducted to investigate the diversity of higher fungi and relationship between higher fungi and climatic factors in Naejangsan National Park from April 2004 to October 2010. The obtained results from investigation were as follows. The higher fungi were classified into 48 families, 158 genera and 451 species in Basidiomycotina, 13 families, 26 genera and 39 species in Ascomycotina, and 4 families, 7 genera and 7 species in Myxomycetes, and most of them belonged to Hymenomycetidae in Basidiomycotina. Dominant species belonged to Ttricholomataceae (72 species), Russulaceae (39 species), Polyporaceae (41 species), Boletaceae (40 species), Cortinariaceae (35 species) and Amamtaceae (28 species). For the habitat environment, the ectomycorrhizal mushrooms were 38.8% (15 families, 36 genera and 193 species), litter decomposing and wood rotting fungi 39.4% (36 families, 107 genera and 196 species), grounding Fungi 19.9% (24 families, 51 genera and 99 species) and others 1.8% (3 families, 4 genera and 9 species). Monthly, most of higher fungi were found in July, August and September, and least found in November. In climatic conditions, most higher fungi were occurred in $23^{\circ}C$and above of mean temperature, $20^{\circ}C$and above of minimum temperature, and $29^{\circ}C$and above of maximum temperature. most of higher fungi were found in 73% and above of relative humidity and 200 mm and above of monthly precipitation. In case of ectomycorrhizal fungi like Amamtaceae, Boletaceae and Cortinariaceae, significance levels are not high in $32^{\circ}C$ and above of maximum temperature which mostly affects species occurrence than other climatic factors of mean and minimum temperature and monthly precipitation.

Distribution of Higher Fungi in Wolchulsan National Park (월출산 국립공원의 고등균류 분포)

  • Jang, Seog-Ki
    • The Korean Journal of Mycology
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    • v.42 no.1
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    • pp.9-20
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    • 2014
  • The result of the survey on higher fungi in the Wolchulsan National Park from April 2009 to October 2011 is as follows. During the survey, total of 1 kingdoms 2 divisions 5 classes 18 orders 56 families 133 genera and 298 species were surveyed, Basidiomycota has 12 orders 47 families 120 genera 278 species, Ascomycota 6 orders 9 families 13 genera 20 species. As for Basidiomycota, Agaricomycetes has 46 families 118 genera 276 species. The most occurred fungi were Russulaceae with 37 species, followed by Boletaceae, Amanitaceae, Agaricaceae and Polyporaceae. Various species of most higher fungi occurred during the period with average temperature of 26.0~27.9, max. 32.0~34.9, min. 24.0~25.9, and over 100 mm of precipitation.

Studies on Constituents of the Higher Fungi of Korea(XXXVIII) - Antitumor Components Extracted from Cultured Mycelia of Pleurotus pulmonarius - (한국산(韓國産) 고등(高等) 균류(菌類)의 성분(成分) 연구(硏究)(제38보)(第38報) -조개느타리버섯의 항암(抗癌) 성분(成分)-)

  • Lee, Kyung-Lim;Lee, Chong-Ock;Kim, Ha-Won;Kim, Jung-Woo;Kim, Sung-Won;Choi, Eung-Chil;Kim, Byong-Kak
    • The Korean Journal of Mycology
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    • v.13 no.1
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    • pp.11-21
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    • 1985
  • Antitumor components were obtained from the cultured mycelia of Pleurotus pulmonarius by ethanol precipitation. The protein-bound polysaccharide was subjected to DEAE-­Sephadex column chromatography and Sephadex G-200 gel filtration. The antitumor fraction $C_1$ was isolated. The inhibition ratio of fraction $C_1$ was 81.8 % in the doses of 10 mg/kg/day for 10 days. The antitumor fraction $C_1$ consisted of a polysaccharide and a protein. The protein-moiety was composed of 14 amino acids. From the peritoneal cell populations in the mice given antitumor fraction $C_1$, the injection of the fraction caused the influx of peritoneal macrophages at two days when compared with those of soluble starch. This was named pulmonaran after its species name.

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The culture conditions for mycelial growth and sclerotial formation of Polyporus umbellatus

  • Lee, Min Woong;Chang, Kwang Chun;Shin, Do Bin;Lee, Kyung Rim;Im, Kyung Hoan;Jin, Ga-Heon;Shin, Pyung Gyun;Xing, Yong Mei;Chen, Juan;Guo, Shun Xing;Lee, Tae Soo
    • Journal of Mushroom
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    • v.11 no.4
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    • pp.194-200
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    • 2013
  • Polyporus umbellatus (Syn. Grifola umbellata) is a sclerotium forming mushroom belongs to family Polyporaceae of Polyphorales, Basidiomycota. The sclerotia of P. umbellatus have long been used for traditional medicines in China, Korea and Japan. This study was initiated to obtain the basic data for artificial sclerotial production of P. umbellatus. Here, we investigated the favorable conditions for mycelial growth of P. umbellatus and its symbiotic fungus Armillaria mellea. We also evaluate the favorable carbon and nitrogen sources for sclerotial formation in dual culture between P. umbellatus and A. mellea. The favorable conditions for mycelial growth of P. umbellatus were $20^{\circ}C$ and pH 4, while optimal conditions for mycelial growth of A. mellea were $25^{\circ}C$ and pH 6. The carbon sources for optimal mycelial growth of P. umbellatus were fructose and glucose, while carbon sources for favorable mycelial growth of A. mellea were also fructose and glucose. The nitrogen sources for favorable mycelial growth P. umbellatus were peptone and yeast extract, while optimal mycelial growth of A. mellea were obtained in peptone and yeast extract. When P. umbellatus and A. mellea were dual cultured on carbon sources, sclerotia were induced on basal media supplemented with glucose, fructose and maltose at pH 4~6, while nitrogen sources inducing sclerotia were basal media supplemented with peptone and yeast extract for 60 days at $20^{\circ}C$ under dark condition.

Occurrence according to Resource Utilization Characteristics of Higher Fungi in Naejangsan National Park (내장산 국립공원 고등균류의 자원이용적 특성에 따른 발생)

  • Kim, Chong-Young;Jang, Seog-Ki;Kim, Mi-Suk
    • The Korean Journal of Mycology
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    • v.45 no.4
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    • pp.270-283
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    • 2017
  • In a survey on higher fungi from 2004 to 2011, and also in 2013, in Naejangsan National Park, a total of 2 divisions, 7 classes, 21 orders, 74 families, 229 genera, and 521 species were observed. Dominant species belonged to the families Boletaceae and Russulaceae (44 species), Agaricaceae (35 species), Polyporaceae (29 species), and Amanitaceae (27 species). For the habitat environment, 21 families, 44 genera, and 192 species (36.9%) (63 species of poisonous mushroom, 79 species of edible and medicinal mushroom, and 43 species of unknown edible & poisonous mushroom) of ectomycorrhizal mushrooms were found; 41 families, 118 genera, and 199 species (38.2%) (14 species of poisonous mushroom, 85 species of edible & medicinal mushroom, and 90 species of unknown edible and poisonous mushroom) of litter decomposing and wood rotting fungi were found, and 29 families, 66 genera, and 121 species (23.2%) (8 species of poisonous mushroom, 54 species of edible and medicinal mushroom, and 47 species of unknown edible & poisonous mushroom) of grounding fungi were found, and 9 species were the other habitat. In terms of seasonality, most of the higher fungi were found in July, August, and September. In terms of altitude, the most species were observed at 200~299 m, and populations dropped by a significant level at an altitude of 700 m or higher. It seemed that the most diversified higher fungi occurred at climate conditions with a mean air temperature of $25.0{\sim}28.9^{\circ}C$, a maximum air temperature of $30.0{\sim}33.9^{\circ}C$, a minimum air temperature of $21.0{\sim}24.9^{\circ}C$, a relative humidity of 73.0~79.9%, and over 400.0 mm of rainfall.

Effects of Aqueous Medicinal Herb Extracts and Aqueous Fermented Extracts on Alcohol-Metabolizing Enzyme Activities (약용식물의 열수추출물과 적정 조성추출물 및 그 발효물이 알콜대사 효소활성에 미치는 영향)

  • Lee, Ka-Soon;Kim, Gwan-Hou;Seong, Bong-Jae;Kim, Hyun-Ho;Kim, Mi-Yeon;Kim, Mee-Ree
    • Food Science and Preservation
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    • v.16 no.2
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    • pp.259-265
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    • 2009
  • To develop an effective anti-hangover product, hot-water extracts of 25 medicinal herbs were screened for inhibition or activation of alcohol dehydrogenase(ADH) and acetaldehyde dehydrogenase(ALDH), and 12 herbs were selected for further study. Chosen medicinal herb extracts(CMHEs) were fermented by Lactobacillus delbruechii subspecies lactis for 10 days at $35^{\circ}C$ after saccharification with nuruk(malt inoculated by 5 types of microbs) for 72 hours at $35^{\circ}C$ and both CMHEs and fermented CMHEs(FCMHEs) were explored for anti-hangover effects in vitro. We found significant ADH inhibition by hot-water extracts of Pueraria thunbergiana, Hovenia dulcis Thunb, Lycium chinense, Glycyrrhiza uralensis, Acanthopanax sessiliflorus, Liriope platyphylla, and Ixeris dentata, and significant ALDH activation by extracts of Acanthopanax sessiliflorus, Lycium chinense, Ixeris dentata, and Polypori umbellati of the Polyporaceae. The ADH effects on CMHE and FCMHE were -20.22% and -62.63% of control values, and the ALDH effects 173.20% and 280.17%, respectively. In rats given 20%(v/v) alcohol(15 mL/kg), FCMHEs significantly decreased blood acetaldehyde concentrations on 3 hours after ethanol administration, in a dose-dependent manner(p<0.05). Notably, blood acetaldehyde concentrations were markedly reduced in animals given FCMHEs(400 mg/kg) compared to levels seen in rats receiving CADB(commercial alcohol detoxification beverage). Thus, anti-hangover effects were promoted by fermentation of certain medicinal herb extracts.

Floral Studies on Korean Wood-rotting Fungi (II) -on the flora of the Aphyllophorales(Basidiomycotina)- (한국산(韓國産) 목재부후균류(木材腐朽菌類)의 분포상(分布相)에 대한 연구(硏究) (II) -담자균류(擔子菌類) 민주름버섯목(目)의 분포(分布)에 대하여-)

  • Jung, Hack-Sung
    • The Korean Journal of Mycology
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    • v.22 no.1
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    • pp.62-99
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    • 1994
  • The fungal flora of Korean wood-rotting fungi were studied for two years from March of 1990 to February of 1992. Fresh fungi were collected from national parks, local areas, and islands throughout the country. Fleshy fungi of the Aphyllophorales were identified through specimen examination and literature studies. Total 217 species and 1 variety were counted, among which Aleurodiscus cerussatus, Botryobasidium obtusisporum, Ceraceomyces cystidiatus, Erythricium hypnophilum, Grandinia crustosa, Grandinia spathulata, Hyphoderma praetermissum, Hyphoderma roseocremeum, Hypochnicium bombycinum, Hypochnicium detriticum, Hypochnicium lundellii, Laeticorticium roseum, Mycoacia fuscoatra, Peniophora incarnata, Phanerochaete avellanea, Phanerochaete filamentosa, Phanerochaete martelliana, Phlebia lilascens, and Trechispora vaga under the Corticiaceae, Chondrostereum purpureum and Cystostereum subabruptum under the Stereaceae, Tomentella pilosa under the Thelephoraceae, Asterostroma laxum, Hymenochaete cruenta, Hymenochaete fuliginosa, Hymenochaete tabacina, Inonotus radiatus, and Phellinus pomaceus under the Hymenochaetaceae, Antrodia crassa, Antrodia serialis, Ceriporia reticulata, Oligoporus balsameus, Oligoporus guttulatus, Oxyporus cuneatus, Rigidoporus microporus, and Trichaptum laricinum under the Polyporaceae, total 36 species were confirmed as unrecorded species to Korea and are registered here with Korean names and English descriptions.

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