• Research in Plant Disease
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• v.21 no.2
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• pp.74-81
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• 2015

The specific and sensitive nested-PCR method to detect Acidovorax citrulli, a causal agent of bacterial fruit blotch on cucurbitaceae, was developed. PCR primers were designed from the draft genome sequence which was obtained with the Next Generation Sequencing of A. citrulli KACC10651, and the nested-PCR primer set (Ac-ORF 21F/Ac-ORF 21R) were selected by checking of specificity to A. citrulli with PCR assays. The selected nested-PCR primer amplified the 140 bp DNA only from A. citrulli strains, and detection sensitivity of the nested PCR increased 10,000 times of $1^{st}$ PCR detection limit (10 ng genomic DNA/PCR). The nested PCR detected A. citrulli from the all samples of seed surface wash (external seed detection) of the artificially inoculated watermelon seeds with $10^1cfu/ml$ and above population of A. citrulli while the nested PCR could not detected A. citrulli from the mashed seed suspension (internal seed detection) of the all artificially inoculated watermelon seeds. When the naturally infested watermelon seeds (10% seed infested rate with grow-out test) used, the nested PCR detected A. citrulli from 2 seed samples out of 10 replication samples externally and 5 seed samples out of 10 replication samples internally. We believe that the nested-PCR developed in this study will be useful method to detect A. citrulli from the Cucurbitaceae seeds.

• Research in Plant Disease
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• v.28 no.4
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• pp.231-236
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• 2022

Oxypetalum coeruleum, commonly known as Tweedia, is a perennial herbaceous plant of the Apocynaceae family native to southern Brazil and Uruguay. Tweedia plants are grown as one of the most popular ornamental flowers for floral arrangement in Korea. In May 2021, several tweedia plants in a single greenhouse in Gimje, Jeollabuk-do were found to show virus-like symptoms including necrotic rings, vein-clearing, chlorotic mottle, and mosaic on the leaves, and necrosis on the stems. Here, we have identified tomato spotted wilt virus (TSWV) in symptomatic tweedia leaves by applying high-throughput RNA sequencing. In the result, a single infection by TSWV was verified without mixed infections of different virus species. To confirm the presence of TSWV, a reverse transcription polymerase chain reaction was performed with a specific primer set to the N gene of TSWV. The complete genomic sequence of L, M, and S segments of TSWV 'Oxy' isolate were determined and deposited in GenBank under accession numbers LC671525, LC671638, and LC671639, respectively. In the phylogenetic tree analysis by maximum likelihood method, 'Oxy' isolate showed a high relationship with TSWV 'Gumi' isolate from Gerbera jamesonii in Gyeongsangbuk-do, Korea; for all three RNA segments. To our knowledge, this is the first report of TSWV infection of O. coeruleum in Korea.

• Korean journal of applied entomology
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• v.46 no.1 s.145
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• pp.19-25
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• 2007

A survey to investigate the inhabitation of Callipogon relictus Semenov and evaluate the population of the species in the Gwangneung Forest was conducted during last seven years. During the study, a female was observed in the forest in 2006 which confirmed a possibility of the inhabitation with a small population. Fortunately, a ovipositing female was observed in the forest during this study period in 2006. The female laid more than 20 eggs singly in the crack of bark of the Carpinus laxiflora Blume. We collated the all available data for the species with the present study including the previous reports to provide the information far the conservation plan. It will be needed the long term monitoring and various efforts for the conservation of the species will be need hereafter.

• Korean Journal of Soil Science and Fertilizer
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• v.32 no.3
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• pp.319-325
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• 1999

A culture-dependent survey of bacterial community in the soil-root system of red pepper and tomato was conducted by dilution plate count method. The bacterial community within soil was not different from that of rhizoplane. However, the populations of fluorescent, pseudomonads were higher in rhizoplanes than in soils and higher in healthy rhizoplanes than in Phytophthora disease-infested rhizoplanes. The bacterial community of the pepper cropped soil and rhizoplanes was very similar to that of the tomato-cropped soil and rhizoplanes. Among 285 identified bacterial colonies, most colonies were belong to two groups by fatty acid analyses: 52% of the 285 colonies were belong to low G + C gram positive bacteria group. Bacillus spp. and 33% were belong to high G + C gram positive bacteria group. In order to use beneficial microorganisms to agro-ecosystem, these data of field trials should be intensively accumulated.

• Journal of Life Science
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• v.28 no.5
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• pp.555-562
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• 2018

Swine influenza virus (SIV) causes one of the most common diseases of the pig population, and its subtypes are determined by hemagglutinin (HA) and neuraminidase (NA). Recently, the SIV subtype diagnosis has been developed. The method using antigen-antibody reaction rather than PCR was mainly used because of the large change in the ribonucleotide sequences of SIV. Here, we have developed 10 diagnostic primer sets through multi-nucleotide sequences alignment of spreaded SIV since 2008 in Korea and then optimized the reaction of the one-step RT-PCR for rapid determination of SIV subtype. In addition, specific primers were designed to early determine the pandemic SIV by detecting unique M sequences proven in highly infectious and virulent subtypes of the influenza H1N1 (pH1N1). Here, some of the SIVs spread in Korea from 2008 to 2014 have been tested to determine the subtypes and pandemic potential of SIV. All diagnostic primer sets were found to be able to accurately determine the SIV subtype and to detect the pandemic SIV. In conclusion, it was confirmed that the optimized one-step RT-PCR analysis using these primer sets is useful for rapid diagnosis of SIV subtypes. These results can be used for development of SIV subtype diagnostic kit to early detect before virulent SIV spreads do.

• Journal of the Korea Academia-Industrial cooperation Society
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• v.19 no.12
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• pp.353-362
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• 2018

The national loss caused by the periodic livestock epidemic is very large. In addition, vehicle movement is the main cause of livestock epidemics in Korea. In this context, this study analyzed the relationship between the degree centrality of livestock facilities and the outbreak of infectious diseases. For this purpose, a livestock vehicle movement network was constructed using the facility entrance data provided by KAHIS. Afterwards, the centrality index was derived for each facility in the vehicle movement network and the mean centrality index of the epidemic and non-epidemic facilities were compared. The analysis results are summarized as follows. First, the degree centrality of epidemic facilities is significantly greater than non-epidemic facilities. As a result of the analysis of the entire period data and the period-based data, in most data, the degree centrality of facilities where livestock infectious diseases occurred was significantly greater than most non-occurrence facilities. Second, in the entire period data, the difference in degree centrality between the epidemic and non-epidemic facilities was smaller for HPAI than for FMD. On the other hand, no significant difference was found in the results of the analysis according to the divided period. The policy implications of the results are as follows. First, proactive management of facilities based on centrality is needed. Second, in the case of cloven-hoofed animal facilities, it is more urgent to introduce a management policy based on the degree centrality.

• Korean journal of applied entomology
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• v.62 no.2
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• pp.103-107
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• 2023

Fifteen insect species have been identified as olive pests through a survey conducted in olive orchards on Jeju island from 2019 to 2022. The occurrence and fruit damage caused by Lepidopteran and hemipteran were significant severity. Among the moths, the order in which the population was large was as follows: Alpita nigropunctalis, Aterpia circumfluxana, Homona magnanima, and Adoxophyes honmai. These lepidopteran species primarily caused damage to leaves, but P. nigropunctalis inflicted severe damage to the fruits by feeding on the inside. Three stink bugs, namely Plautia stali, Halyomorpha halys, and Chinavia hilaris, were commonly observed and responsible for damaging olive furits. Chrysomphalus bifasciculatus and Pseudaulacaspis pentagona were found to occur and damaged fruit in non-controlled orchard. Prociphilus oleae, which is being recognized for the first time in Korea, and Ricania shantungensis discovered for the first timein olive orchard. Saissetia olea, a quarantine pest, was found in one farm, but subsequent pesticide spraying resulted in their elimination. Although severe damage was inflicted upon the olives, no perforated pests were found during the survey.

• Research in Plant Disease
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• v.9 no.2
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• pp.94-98
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• 2003

To produce antibodies against Pseudomonas tolaasii and P. agarici, lyophilized P. tolaasii and P. agarici ($5{\times}10^7$ cfu/ml) and Freund, s adjuvant were immunized into rabbits 4 times. The specificity and sensitivity of the antibodies were evaluated by immunodiffusion test and indirect enzyme-linked immunosorbent assay (id ELISA). The ${\alpha}$-P. tolaasii antibody was very specific only against P. tolaasii, while ${\alpha}$-P. agarici antibody was not specific and showed a high cross reactivity toward P. tolaasii with detection limit concentration of $2{\times}10^3$ cfu/ml. However, the cross reactivities of ${\alpha}$-P. agarici antibody toward the related species including P. reactans were very low. Our results showed that ${\alpha}$-P. tolaasii and ${\alpha}$-P. agarici antibodies against P. tolaasii and P. agarici, respectively, might be useful for rapid and simple detection of the causal agents of bacterial brown and yellow blotches in cultivated oyster mushrooms.

• Research in Plant Disease
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• v.16 no.3
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• pp.247-253
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• 2010

Apple scar skin viroid (ASSVd) is one of the smallest viral pathogens infecting fruits, especially apple, and causes a significant damage to fruit trees. ASSVd usually induced the skin-dapple ring symptoms, but in 'Fuji' varieties, corked spot were occurred on the fruit skin in 2009. This new symptom will be of great helpful to diagnosis ASSVd in sight. ASSVd was surveyed in apple and pear from 2009 to 2010 in Korea, and ASSVd was identified in 20 out of 1,193 trees. The infection rate was 1.7%. To screen the infectivity of ASSVd among apple cultivars, real-time RT-PCR was applied followed by designing of ASSVd specific primers based on highly conserved regions of several ASSVd isolates including Korean isolate. NADH dehydrogenase subunit 5 (nad 5) gene, which is mRNA of the mitochondrial gene, was used for internal control. In this study, ASSVd infected apples were classified into 12 groups depending on different symptoms and symptom severity (scaring, rusting or malformation). Taken together, this study suggested that real-time PCR analysis was more sensitive to detect the low copy of ASSVd on early viroid infected apple skins than regular RT-PCR method.

• Korean journal of applied entomology
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• v.50 no.1
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• pp.55-63
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• 2011

This study was conducted to develop an artificial diet for the mugwort looper, Ascotis selenaria (Lepidoptera: Geometridae), which is an insect pest to leaves of citrus (Citrus unshiu). Corn and soybean powder were selected as main nutrient sources for larvae of A. selenaria after several diets consisted of wheat germ, corn, kidney bean and/or soybean were tested for larval development and survival. A higher amount of the main nutrients in the diet increased the larval survivorship. Addition of yeast and cholesterol in diet increased the larval survivorship. Finally the composition of diet was decided as followings; corn 100 g, soybean 100 g agar 25 g, Brewers' yeast 30 g, cholesterol 0.5 g, Vanderzant vitamin mixture 2 g, Wesson's salt mixture 2 g, sorbic acid 2 g, ascorbic acid 2 g, and methyl-4-hydroxybenzoate 2.5 g, and distilled water 1 liter. Development periods of larvae and pupae, survival rate and fecundity of A. selenaria reared on the diet were not significantly different with those on the host plant, citrus leaves. Larvae of early instars were reared in a group, while larvae of later instars (5-6th) were reared individually. Adult mating was conducted in a plastic cage and an oilpaper covered with a gauze was provided as an oviposition site.